Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00698 ATGGCAAAATCATCAGAAGATGAACATCCAGTCAAGGCTTTCGGATGGGCTGCCCGAGATTCATCTGGCTTACTCTCTCCCTTCCATTTCTCTCGAAGGGAAAATCGTGATGATGATGTCAGTATCAAAGTCCTTTACTGTGGGGTTTGTCATTCTGATCTACATTTGCTCAAGAATGATTGGGGTGTCACAAATTATCCAATTGTCCCAGGGCATGAGATTGTTGGTATAGTGACCTCTGTTGGGACTAATGTGAAGAAATTCAAAGCGGGAGATCAAGTCGGGGTCGGTGTCATAGTTGGATCTTGCAGAAGTTGTGAAAATTGTGAACAAGACTTGGAGAATTACTGCCCCAAGATGATATATACTTACAACTCACATTCATTTGATGGAGAAAAGACTTATGGTGGTTATTCTGATAAGGTCGTCGTTGATCAGCATTTCGTACTCCGATTTCCTGACAACTTACCCCTTGATGCTGGAGCTCCACTTCTTTGCGCTGGAATCACAATTTATAGCCCTATGAAATACTATGGAATGACTGAATCTGGTAAGCATTTGGGTGTGGTTGGTCTTGGTGGGCTTGGTCATGTTGCTGTTAAGTTTGGCAAGGCATTTGGGTTGAAAGTTACTGTCATTAGTACCTCTCCAAGAAAGAAGGAGGAAGCCATTGACCGGCTCGGTGCCGATGCTTTCCTTGTTTCTAGCGATCCTGCACAATTAAAGGGTGCCATGGGGACAATGGATTACATTATCGACACGGTATCCGCTATCCATGCTCTTGCTCCATTGCTTGGTCTGCTAAAGCTGAATGGAAAGTTGGTCACTGTGGGTTTACCTAACAAGCCCCTAGAGCTGCCAGTTGTTTCTCTAGTTCTCGGTAGGAGGATGGTTGGTGGAAGCAACTTTGGAGGGTTGAAAGAGACACAAGAGATGTTGGATTTCTGTGCTCAGCACAACATCACAGCAGATATTGAGCTCATTCAGATGGATGACATTAACAAGGCCATCGAAAGACTAGCGAAAGCCGATGTTCGATACCGGTTTGTGATCGACATTGCAAACTCCTTGAAATAG 1077 44.48 MAKSSEDEHPVKAFGWAARDSSGLLSPFHFSRRENRDDDVSIKVLYCGVCHSDLHLLKNDWGVTNYPIVPGHEIVGIVTSVGTNVKKFKAGDQVGVGVIVGSCRSCENCEQDLENYCPKMIYTYNSHSFDGEKTYGGYSDKVVVDQHFVLRFPDNLPLDAGAPLLCAGITIYSPMKYYGMTESGKHLGVVGLGGLGHVAVKFGKAFGLKVTVISTSPRKKEEAIDRLGADAFLVSSDPAQLKGAMGTMDYIIDTVSAIHALAPLLGLLKLNGKLVTVGLPNKPLELPVVSLVLGRRMVGGSNFGGLKETQEMLDFCAQHNITADIELIQMDDINKAIERLAKADVRYRFVIDIANSLK 358
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 9757281 9762481 - Lsi10G006980.1 Lsi10g00698 672255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00698 358 SUPERFAMILY GroES-like 21 185 IPR011032 -
Lsi10g00698 358 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 156 321 IPR036291 -
Lsi10g00698 358 Pfam Alcohol dehydrogenase GroES-like domain 38 150 IPR013154 -
Lsi10g00698 358 SMART PKS_ER_names_mod 23 351 IPR020843 GO:0016491
Lsi10g00698 358 PANTHER ALDEHYDE REDUCTASE 12 357 - -
Lsi10g00698 358 CDD CAD1 14 352 - -
Lsi10g00698 358 Gene3D - 16 353 - -
Lsi10g00698 358 PANTHER CINNAMYL ALCOHOL DEHYDROGENASE 2-RELATED 12 357 - -
Lsi10g00698 358 Gene3D - 167 323 - -
Lsi10g00698 358 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 71 85 IPR002328 GO:0008270|GO:0016491
Lsi10g00698 358 Pfam Zinc-binding dehydrogenase 194 317 IPR013149 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00180 Lsi-Chr1:1747968 Lsi10g00698 Lsi-Chr10:9757281 2.37E-11 dispersed
Lsi01g00823 Lsi-Chr1:6523361 Lsi10g00698 Lsi-Chr10:9757281 5.91E-165 dispersed
Lsi10g00698 Lsi-Chr10:9757281 Lsi02g02009 Lsi-Chr2:26044274 1.42E-19 dispersed
Lsi10g00698 Lsi-Chr10:9757281 Lsi10g00699 Lsi-Chr10:9771521 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00698 K00083 - csv:101205228 595.119