Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00699 ATGGCGAAATCACCAGAAAATGAACATCCTCACAAAGCTTTTGGTTGGGCAGCTCGAGATTCTTCTGGCTTACTCTCCCCTTTTCATTTCTCTCGAAGGGAAAATGGTGATGATGATGTCTCTATCAAAGTCCTTTTCTGTGGGGTTTGCCACTCTGATCTGCATATGCTCAAGAATGACTGGGGTGCTACAGATTATCCTATAGTACCAGGGCATGAGATTGTTGGTGTTGTGACTTCTGTTGGGAAAAATGTGAAGAAATTCAAAGCAGGAGACGAAGTCGGGGTCGGTGTCATAGTTGGATCTTGTAGAAATTGTGAAAATTGTAAACAAGACTTGGAGAGTTACTGTCCTAAGATGGAATATACTTATAATTCTCCTGGAGTTGATGGATCAAAGAATTACGGTGGTTATTCCGATAAAATCGTTGTCGATCAACATTTTGTTGTCAGATTTCCTAAAAACTTAGCTCTTGATGCTGGGGCTCCACTCCTATGTGCTGGGATTACAGTTTATAGCCCAATGAAACATTTTGGAATGACTGAAGCTGGTAAGCATTTGGGTGTGGCTGGACTTGGTGGGCTTGGTCATGTTGCTGTTAAATTTGGAAAGGCATTTGGATTGAAAGTTACTGTCATCAGTACCTCTCCCAGGAAGAAGGAAGAAGCAATCGACAGGCTCGGTGCCGATGCTTTCGTTGTTTCGAGTGATCCCGAACAATTGAAGGCTGCCATGGGAACTATGGATTACATTTTGGACACAATATCTGCTGTTCATCCTCTGGATCCATTGATTAGTCTGCTAAACCTCAATGGGAAATTGGTCGTTGTCGGTAGGAGGCTGGTTGCTGGAAGCAACTTTGGAGGACTGAAAGAGACACAAGAGATGTTAGATTTCTGTGGAAAACACAACATTACAGCAGAAATTGAGCTCATTAAAATGGATGCCATTAACTCGGCTATCGAAAGGCTTGCGAAAGCTGATGTTAAATATCGGTTCGTGATCGACATCGAAAATTCTTTCAAATAG 1029 42.37 MAKSPENEHPHKAFGWAARDSSGLLSPFHFSRRENGDDDVSIKVLFCGVCHSDLHMLKNDWGATDYPIVPGHEIVGVVTSVGKNVKKFKAGDEVGVGVIVGSCRNCENCKQDLESYCPKMEYTYNSPGVDGSKNYGGYSDKIVVDQHFVVRFPKNLALDAGAPLLCAGITVYSPMKHFGMTEAGKHLGVAGLGGLGHVAVKFGKAFGLKVTVISTSPRKKEEAIDRLGADAFVVSSDPEQLKAAMGTMDYILDTISAVHPLDPLISLLNLNGKLVVVGRRLVAGSNFGGLKETQEMLDFCGKHNITAEIELIKMDAINSAIERLAKADVKYRFVIDIENSFK 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 9771521 9774747 - Lsi10G006990.1 Lsi10g00699 672256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00699 342 Pfam Zinc-binding dehydrogenase 194 279 IPR013149 -
Lsi10g00699 342 PANTHER CINNAMYL ALCOHOL DEHYDROGENASE 8 5 340 - -
Lsi10g00699 342 SMART PKS_ER_names_mod 23 335 IPR020843 GO:0016491
Lsi10g00699 342 Pfam Alcohol dehydrogenase GroES-like domain 38 151 IPR013154 -
Lsi10g00699 342 Gene3D - 16 337 - -
Lsi10g00699 342 PANTHER ALDEHYDE REDUCTASE 5 340 - -
Lsi10g00699 342 CDD CAD1 14 336 - -
Lsi10g00699 342 Gene3D - 167 307 - -
Lsi10g00699 342 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 158 305 IPR036291 -
Lsi10g00699 342 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 71 85 IPR002328 GO:0008270|GO:0016491
Lsi10g00699 342 SUPERFAMILY GroES-like 20 185 IPR011032 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00532 Lsi-Chr3:6272532 Lsi10g00699 Lsi-Chr10:9771521 2.87E-119 dispersed
Lsi04g01768 Lsi-Chr4:24917137 Lsi10g00699 Lsi-Chr10:9771521 3.33E-107 dispersed
Lsi05g00239 Lsi-Chr5:3151036 Lsi10g00699 Lsi-Chr10:9771521 4.32E-116 dispersed
Lsi09g00111 Lsi-Chr9:1051318 Lsi10g00699 Lsi-Chr10:9771521 2.98E-102 dispersed
Lsi10g00699 Lsi-Chr10:9771521 Lsi02g02009 Lsi-Chr2:26044274 2.74E-15 dispersed
Lsi10g00698 Lsi-Chr10:9757281 Lsi10g00699 Lsi-Chr10:9771521 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00699 K00083 - csv:101205228 629.787