Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00700 ATGAGGCCCTTATCCTCACTTTCCTCTCTCTGTTCTTCTTCTTCTTCCTCCTCCTCTATTTCTTTTCCACCACGCGCTCTCCTTCTTCACTTTTCTCAATTTGCAACTTCTTCGAGGCGCCACGACGAAGAGTCTCGAAATGTGAGGGTTTCGGTCTGGTGGGACTTCGAGAATTGCAACATTCCTGCGGGTGTCAACGTCTTTAAGGTCGCCCATTTAATCACTGCCGCTGTAAGGACCAATGGCATCAAGGGTCCTGTTCAGATTACTGCTTTTGGTGACGTTTTACAGCTCTCGAGAGCGAAACAGGAGGCTCTCTCTTCCACTGGAATTAGCCTGACCCACATTCCTCAGGGTGGTAAAAACAGTGCTGATAGGTCTCTTCTTGTAGATCTTATGTACTGGGTTTCTCAAAACCCTCCACCAGCACATCTTTTTCTAATTTCTGGTGACAGGGACTTTGCCAGCATTTTGCACCGTTTAAGAATGAATAATTACAATGTGTTGCTAGCAAGCCCTGAAAGTGCTCCCAGTGTTTTATGCAGTGCTGCAAGCATCATGTGGCATTGGCATGCTTTGATTAGAGGGGAAAATCTAGTTGGAAGGCATTTTAATCAACCACCGGATGCTCCATACGGTTCTTGGTATGGCCATTATAAGGCTCCTCTTGAAGACCCATTTCCAGTTAATGAGCAACCATCTTCTTTACGAGCCGAGGAGGTTTCTGAGCTCAGTTCAGATACTAAACTTCGTCCCATTCCAAAGACAGTCATTAGGCAAATACATAACATTTTGAAATTGTATCCCAAAGGACTCCTCATTAAAGAACTCCGCTCAGAGTTGGGTAAGAGTTGTATATCTATGGATAGGGACTTTTATGGTTACAAAAAGTTTTCTCGCTTTCTTTTGTCAATGCCACACATTTTAAAGCTCCAAGCACATGATGATGGCCAATTTATTGTCCAAATTGTCACTCCAAAGCGGCCCAAAGAACCATTAGAGTCCAGTAGTGGTACATCTGGTAATGGCACTGAAGAGCAGGACCTTAATCTGATAGCAAACTTAAATAATAATGGTTCCTCAACAGAATCGACGTGTGTACCAGTCCTTCCATCCAATGCCCAAGACAGACCGTTGAAGGTGAAACCGTCTTCCAAATTTGGTAAGCCTATTGTTGAAGCTATGGAAGGGGAAGCATCAAGATGCCCGGTTTCTGAGCCACATGTTATAGAAGATTCAAAGCAGACCAGTAAATTTGAAGCTAACAGTAATTTGACTCCTTCAATTGGACAGCATTCTAAGGCCAAGACGAGTTTTTTGAGTAGAATATGGAGAAGGCTTTTAGGCAATAAGGACATTAATTCTGAAAATGGAAGTCATTGTATTTCTGAAAAATGCTCTACATCAGATGATACTTCGAAGCAGAAAAGTTGTAGTGGCCTTGTGGCAACTTATTCTAGCGACAGCCTTGGGGAGGCAAAAACTGAAGGAAGAACTGCTAAGCCAATGAGTGAAGATGCTAATTCAGTGCATCAAGTTTCATATTCACCTGATCGTGAGTCTGCTAAGCTTCAGAAAACTGTCATAGTTGTTAGTGCATATGATGATAAATCTAGTTCTAATCCAGGACTACTTGGTAGCATTAGAAATTGGTTCAAGTTTTGGGGAAAGAGTACTGAGAACAGTGAAGCCAGCGAGCATTGTTGTCAACAAAACCAGTTAAAGAATCAATCTGGGAAACATCATCTTTTTTCCAGCAGTTCTTTTTGGCAAGACATGCAATCCTTTATTGAAACACCTAAAGGAGTTGAGATTATTTCGCAGTCAAAAACCAGGTCGGAAATAGCTCAAAATCTGCTAGAGGGAGGACCTCCGGTTCTTAAATCTTTAAGCACTAGCGATCTCTTCGACTTCTTGGAATTGTTAATATCAGATAAGAAATGGGTGGAGGAATTCCCATCTGAAACAAATCCTTTTAAGCTCACTCTCTCTATTGCTAGGAAAAACTCTTGCATGGAACCGTTGCATCATGCAAATGGGTTGGCACCAATCTTTACGAAGAAAGAGTCACATTGCAGCTTCGAGGGATCTCGAGAACATGATTCAGATTCAGATAAGAAAAATGAAAATATTCCTCAAGCTACAACTATGACTAAAAACAAGTTTCCAGAGAGGATGAGACGCGAGATATTAGGCGACTGTCAAAAGCTCATGGATGAGATCTTGAGGGATCACCCAGAAGGATATAATATGGGGGCCTTCAGAAGACTGTTTCTTGAGAAGTATGGGTATCATCTTGATTTCCAGAAGCTTGGTTACCCTAAGTTGGCATCCTTGCTACAGAAAATACCTGGAGTGACAATAATATCCACCTTTATAGTTCCTACCAGTAAGGCCCCAAAAGTTTCCAAGCTTTCAGCTCTTCCCAGTGATTCAGAGAAAAACACGTCTGATGCCGTAGCGAACTCTGATAATGAATCATCTGTCCTGCCTAGAAAGGATGATGATTTTGAGTCAGCGTGGGAAGAATTAGGTCCAGCCTGCACAGCTTGCAGCAGTGAAAACAAAGCAGAATCGGCATTGAATAGTGAAACAACAGAAGCAACAAAGAAAAAACCAAAAGTTTATTATGAACCTGTCCTTTCAGAGGATGAATCAACGGAAACTGATGGAGATTCTTGTCCTGCTACAGAAGTGCCAGCCAAACAACGAACAAATGAGGAAGAAAGTTCATTAATACAGATCCTCGATTCATGGTATAGTAGCAAAGAAGAAGGTAAGGGCAAGACAGAAAATAGTGATGAGATGATCGATTGTTCTGAAAATTGTTTGAAGCTTTCTAGTTTATCTCCCAGAAGTGAAGCAAATACAGGAAGCTTTGCTAGAAAGCAAAGACATCAAAAGAGCTATTCTTTTGTTTCAGACAACGATGAAAATGGCAAGGAAAAGCTGATTGATGGGATTTTGGGTACCTTGAAGAAATCGAGTGAGTCGCAGATACGTAACTGA 3009 41.67 MRPLSSLSSLCSSSSSSSSISFPPRALLLHFSQFATSSRRHDEESRNVRVSVWWDFENCNIPAGVNVFKVAHLITAAVRTNGIKGPVQITAFGDVLQLSRAKQEALSSTGISLTHIPQGGKNSADRSLLVDLMYWVSQNPPPAHLFLISGDRDFASILHRLRMNNYNVLLASPESAPSVLCSAASIMWHWHALIRGENLVGRHFNQPPDAPYGSWYGHYKAPLEDPFPVNEQPSSLRAEEVSELSSDTKLRPIPKTVIRQIHNILKLYPKGLLIKELRSELGKSCISMDRDFYGYKKFSRFLLSMPHILKLQAHDDGQFIVQIVTPKRPKEPLESSSGTSGNGTEEQDLNLIANLNNNGSSTESTCVPVLPSNAQDRPLKVKPSSKFGKPIVEAMEGEASRCPVSEPHVIEDSKQTSKFEANSNLTPSIGQHSKAKTSFLSRIWRRLLGNKDINSENGSHCISEKCSTSDDTSKQKSCSGLVATYSSDSLGEAKTEGRTAKPMSEDANSVHQVSYSPDRESAKLQKTVIVVSAYDDKSSSNPGLLGSIRNWFKFWGKSTENSEASEHCCQQNQLKNQSGKHHLFSSSSFWQDMQSFIETPKGVEIISQSKTRSEIAQNLLEGGPPVLKSLSTSDLFDFLELLISDKKWVEEFPSETNPFKLTLSIARKNSCMEPLHHANGLAPIFTKKESHCSFEGSREHDSDSDKKNENIPQATTMTKNKFPERMRREILGDCQKLMDEILRDHPEGYNMGAFRRLFLEKYGYHLDFQKLGYPKLASLLQKIPGVTIISTFIVPTSKAPKVSKLSALPSDSEKNTSDAVANSDNESSVLPRKDDDFESAWEELGPACTACSSENKAESALNSETTEATKKKPKVYYEPVLSEDESTETDGDSCPATEVPAKQRTNEEESSLIQILDSWYSSKEEGKGKTENSDEMIDCSENCLKLSSLSPRSEANTGSFARKQRHQKSYSFVSDNDENGKEKLIDGILGTLKKSSESQIRN 1002
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 9783469 9790336 - Lsi10G007000.1 Lsi10g00700 672257

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00700 1002 PANTHER EMB|CAB71880.1 12 943 - -
Lsi10g00700 1002 Gene3D - 726 792 IPR041966 -
Lsi10g00700 1002 CDD LOTUS 731 789 - -
Lsi10g00700 1002 MobiDBLite consensus disorder prediction 325 346 - -
Lsi10g00700 1002 MobiDBLite consensus disorder prediction 852 910 - -
Lsi10g00700 1002 MobiDBLite consensus disorder prediction 693 708 - -
Lsi10g00700 1002 MobiDBLite consensus disorder prediction 489 517 - -
Lsi10g00700 1002 Gene3D - 254 325 IPR041966 -
Lsi10g00700 1002 Pfam NYN domain 49 184 IPR021139 GO:0004540
Lsi10g00700 1002 PANTHER LIMKAIN B LKAP 12 943 IPR024768 GO:0005777|GO:0010468|GO:1903231
Lsi10g00700 1002 Pfam OST-HTH/LOTUS domain 737 789 IPR025605 -
Lsi10g00700 1002 Pfam OST-HTH/LOTUS domain 255 321 IPR025605 -
Lsi10g00700 1002 MobiDBLite consensus disorder prediction 808 827 - -
Lsi10g00700 1002 MobiDBLite consensus disorder prediction 803 832 - -
Lsi10g00700 1002 ProSiteProfiles OST-type HTH domain profile. 730 804 IPR025605 -
Lsi10g00700 1002 MobiDBLite consensus disorder prediction 332 346 - -
Lsi10g00700 1002 MobiDBLite consensus disorder prediction 950 980 - -
Lsi10g00700 1002 MobiDBLite consensus disorder prediction 1 21 - -
Lsi10g00700 1002 MobiDBLite consensus disorder prediction 693 719 - -
Lsi10g00700 1002 Gene3D - 41 191 - -
Lsi10g00700 1002 ProSiteProfiles OST-type HTH domain profile. 253 325 IPR025605 -
Lsi10g00700 1002 MobiDBLite consensus disorder prediction 865 881 - -
Lsi10g00700 1002 CDD LOTUS 254 317 - -
Lsi10g00700 1002 CDD PIN_limkain_b1_N_like 49 173 - -
Lsi10g00700 1002 MobiDBLite consensus disorder prediction 950 967 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00700 - - - cpep:111796232 1434.47
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g00756 Lsi-Chr9:8670354 Lsi10g00700 Lsi-Chr10:9783469 2.37E-41 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1214 . Blo16g00517 . . . Bpe13g00010 . . . Cmo20g01089 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g01353 . . . . Bma06g00530 . . . . Cma20g01079 . . . Cpe16g00066 Bhi10g02348 . . . . . . Cla02g00078 Cam02g0081 Cec02g0083 Cco02g0075 Clacu02g0079 Cmu02g0077 Cre02g0417 Lsi10g00700 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005338 1 4 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi10g00700 Lsi_Chr10 FPKM 28.239775 29.566856 31.484419 31.870571 25.130604 24.961601 28.461037 41.574966 42.921497 48.181545