Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00701 ATGAAGAGATCAGTTAAGAAAAAAAATTATACTATACTTTCATATCATATCATATCATATATTATCATAATCAATATGAAATGTATTATGATGGATGAGAATAAAAAAGCTTTCATGGCTGTGATTCTGATTCAAACCATTTATGCTGGTATGTTTCTTCTCTCAAAGGCTGCTTTCGACGGCGGAATGAACAACTATATCTTCGTTTTCTATCGTCAAGCCATCGCCACAGTCTTCCTTTCTCCCATAGCCTTCTTTTTCCAATGGAAAGATGCCCCACCCTTGACATTCTTCACCTTCTGCAAAATTTTTATGCTCTCTTTATTTGGGATAGCCATATGTTTAAATCTTTATGGGATTGCTCTTGTGTACACGTCAGCAACATTGGCTGCAGCAACTACAAATTGTCTTCCTGTCATCACCTTCTTCGTGGCCCTCTTACTTAGGATGGAGGTGTTGAGGTTGAAATCAATAGCAGGAATTGCAAAGCTAGCAGGAATATTATTGTGTATTGGTGGTGTGGGAATGTTGGCATTTTACAAAGGCCCTCAATTCAACTTGTTTAAGAAACATCATCTCTTTTCTCTCCATAACCCTAATCACCATTCTTCTTCTCTTGCATTACCCAAATCTTGGTTGAAGGGTTGCTTTTTGATGCTAGCTTCCAATACCCTGTGGGGCATTTGGATTGTTCTTCAGGCATTTGTATTGAAAAGCTATCCTTCCAAGCTTCTGTTGACAAATCTTCAATGTTTATTAAGTTCATTTCAATCCTTTGCTATTGCTATTGCAATGGAGAGAGACCCTCAGCAATGGAAACTTGGCTGGAATATTAGGCTTCTTTCAGTCGCATACTGTGGTATCGTGGTAACCGCGGTTACGTATTGTCTTCAAGCTTGGGTTATTGAGAAGAAAGGACCAGTTTATTTAGCCATTACACTAGGAGGAATATTGTTGGTGGGAGGGCTGTATTTTGTGCTATGGGGAAAGAGCAAAGAGCAAAAAATAAGTGAAGAATTATTGAAAGAAGGTAGCAAAGAATGCAACATGCAAGGGAAGGATATCACTAAATTAGGAAATGATGAAAATGCAACATCTCCACTGGAAAATACTACGGTTGTAGTTAGTCATGCGTTATCAATAATGACCACGGTT 1155 38.27 MKRSVKKKNYTILSYHIISYIIIINMKCIMMDENKKAFMAVILIQTIYAGMFLLSKAAFDGGMNNYIFVFYRQAIATVFLSPIAFFFQWKDAPPLTFFTFCKIFMLSLFGIAICLNLYGIALVYTSATLAAATTNCLPVITFFVALLLRMEVLRLKSIAGIAKLAGILLCIGGVGMLAFYKGPQFNLFKKHHLFSLHNPNHHSSSLALPKSWLKGCFLMLASNTLWGIWIVLQAFVLKSYPSKLLLTNLQCLLSSFQSFAIAIAMERDPQQWKLGWNIRLLSVAYCGIVVTAVTYCLQAWVIEKKGPVYLAITLGGILLVGGLYFVLWGKSKEQKISEELLKEGSKECNMQGKDITKLGNDENATSPLENTTVVVSHALSIMTTV 385
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
10 9824531 9834357 + Lsi10G007010.1 Lsi10g00701 672258
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00701 385 Pfam EamA-like transporter family 39 162 IPR000620 GO:0016020|GO:0016021
Lsi10g00701 385 Pfam EamA-like transporter family 214 313 IPR000620 GO:0016020|GO:0016021
Lsi10g00701 385 PANTHER WAT1-RELATED PROTEIN 36 313 - -
Lsi10g00701 385 PANTHER WAT1-RELATED PROTEIN 313 343 - -
Lsi10g00701 385 PANTHER WAT1-RELATED PROTEIN 36 313 IPR030184 GO:0016021|GO:0022857
Lsi10g00701 385 PANTHER WAT1-RELATED PROTEIN 313 343 IPR030184 GO:0016021|GO:0022857
Lsi10g00701 385 SUPERFAMILY Multidrug resistance efflux transporter EmrE 71 181 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01128 Lsi-Chr1:9413047 Lsi10g00701 Lsi-Chr10:9824531 8.31E-47 dispersed
Lsi08g00554 Lsi-Chr8:13722594 Lsi10g00701 Lsi-Chr10:9824531 1.01E-60 dispersed
Lsi10g00701 Lsi-Chr10:9824531 Lsi02g01668 Lsi-Chr2:22494244 4.02E-63 dispersed
Lsi10g00701 Lsi-Chr10:9824531 Lsi10g00702 Lsi-Chr10:9835323 3.14E-139 tandem
Lsi02g01736 Lsi-Chr2:23065762 Lsi10g00701 Lsi-Chr10:9824531 3.93E-15 transposed
Lsi01g01125 Lsi-Chr1:9353369 Lsi10g00701 Lsi-Chr10:9824531 1.08E-88 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00701 - - csv:101203024 560.836