Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi10g00701 | ATGAAGAGATCAGTTAAGAAAAAAAATTATACTATACTTTCATATCATATCATATCATATATTATCATAATCAATATGAAATGTATTATGATGGATGAGAATAAAAAAGCTTTCATGGCTGTGATTCTGATTCAAACCATTTATGCTGGTATGTTTCTTCTCTCAAAGGCTGCTTTCGACGGCGGAATGAACAACTATATCTTCGTTTTCTATCGTCAAGCCATCGCCACAGTCTTCCTTTCTCCCATAGCCTTCTTTTTCCAATGGAAAGATGCCCCACCCTTGACATTCTTCACCTTCTGCAAAATTTTTATGCTCTCTTTATTTGGGATAGCCATATGTTTAAATCTTTATGGGATTGCTCTTGTGTACACGTCAGCAACATTGGCTGCAGCAACTACAAATTGTCTTCCTGTCATCACCTTCTTCGTGGCCCTCTTACTTAGGATGGAGGTGTTGAGGTTGAAATCAATAGCAGGAATTGCAAAGCTAGCAGGAATATTATTGTGTATTGGTGGTGTGGGAATGTTGGCATTTTACAAAGGCCCTCAATTCAACTTGTTTAAGAAACATCATCTCTTTTCTCTCCATAACCCTAATCACCATTCTTCTTCTCTTGCATTACCCAAATCTTGGTTGAAGGGTTGCTTTTTGATGCTAGCTTCCAATACCCTGTGGGGCATTTGGATTGTTCTTCAGGCATTTGTATTGAAAAGCTATCCTTCCAAGCTTCTGTTGACAAATCTTCAATGTTTATTAAGTTCATTTCAATCCTTTGCTATTGCTATTGCAATGGAGAGAGACCCTCAGCAATGGAAACTTGGCTGGAATATTAGGCTTCTTTCAGTCGCATACTGTGGTATCGTGGTAACCGCGGTTACGTATTGTCTTCAAGCTTGGGTTATTGAGAAGAAAGGACCAGTTTATTTAGCCATTACACTAGGAGGAATATTGTTGGTGGGAGGGCTGTATTTTGTGCTATGGGGAAAGAGCAAAGAGCAAAAAATAAGTGAAGAATTATTGAAAGAAGGTAGCAAAGAATGCAACATGCAAGGGAAGGATATCACTAAATTAGGAAATGATGAAAATGCAACATCTCCACTGGAAAATACTACGGTTGTAGTTAGTCATGCGTTATCAATAATGACCACGGTT | 1155 | 38.27 | MKRSVKKKNYTILSYHIISYIIIINMKCIMMDENKKAFMAVILIQTIYAGMFLLSKAAFDGGMNNYIFVFYRQAIATVFLSPIAFFFQWKDAPPLTFFTFCKIFMLSLFGIAICLNLYGIALVYTSATLAAATTNCLPVITFFVALLLRMEVLRLKSIAGIAKLAGILLCIGGVGMLAFYKGPQFNLFKKHHLFSLHNPNHHSSSLALPKSWLKGCFLMLASNTLWGIWIVLQAFVLKSYPSKLLLTNLQCLLSSFQSFAIAIAMERDPQQWKLGWNIRLLSVAYCGIVVTAVTYCLQAWVIEKKGPVYLAITLGGILLVGGLYFVLWGKSKEQKISEELLKEGSKECNMQGKDITKLGNDENATSPLENTTVVVSHALSIMTTV | 385 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 9824531 | 9834357 | + | Lsi10G007010.1 | Lsi10g00701 | 672258 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi10g00701 | 385 | Pfam | EamA-like transporter family | 39 | 162 | IPR000620 | GO:0016020|GO:0016021 | |
Lsi10g00701 | 385 | Pfam | EamA-like transporter family | 214 | 313 | IPR000620 | GO:0016020|GO:0016021 | |
Lsi10g00701 | 385 | PANTHER | WAT1-RELATED PROTEIN | 36 | 313 | - | - | |
Lsi10g00701 | 385 | PANTHER | WAT1-RELATED PROTEIN | 313 | 343 | - | - | |
Lsi10g00701 | 385 | PANTHER | WAT1-RELATED PROTEIN | 36 | 313 | IPR030184 | GO:0016021|GO:0022857 | |
Lsi10g00701 | 385 | PANTHER | WAT1-RELATED PROTEIN | 313 | 343 | IPR030184 | GO:0016021|GO:0022857 | |
Lsi10g00701 | 385 | SUPERFAMILY | Multidrug resistance efflux transporter EmrE | 71 | 181 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi01g01128 | Lsi-Chr1:9413047 | Lsi10g00701 | Lsi-Chr10:9824531 | 8.31E-47 | dispersed | |
Lsi08g00554 | Lsi-Chr8:13722594 | Lsi10g00701 | Lsi-Chr10:9824531 | 1.01E-60 | dispersed | |
Lsi10g00701 | Lsi-Chr10:9824531 | Lsi02g01668 | Lsi-Chr2:22494244 | 4.02E-63 | dispersed | |
Lsi10g00701 | Lsi-Chr10:9824531 | Lsi10g00702 | Lsi-Chr10:9835323 | 3.14E-139 | tandem | |
Lsi02g01736 | Lsi-Chr2:23065762 | Lsi10g00701 | Lsi-Chr10:9824531 | 3.93E-15 | transposed | |
Lsi01g01125 | Lsi-Chr1:9353369 | Lsi10g00701 | Lsi-Chr10:9824531 | 1.08E-88 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi10g00701 | - | - | csv:101203024 | 560.836 |