Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi10g00702 | ATGATGGGAGAGAAAAAAAAAGGTTTGTTGGTAGTGATTCTAATTCAAGCCATTAACGCCGGCATGTTTTTGCTCTCAAAGGCCGCATTAAACGCCGGAATGAACCATTATGTTTATATTTTTTATCGCCAGGCCACCGCCACCCTCTTCCTTTCTCCATTAGCCTTTTTCCGATGGAAAGATGCCCCACCCTTGACATTCTTTACCTTCTGCAAGATTTTTGTGCTCTCTTTGTTTGGGATAGCAATATGTTTAAATTTGTATGGAATTGCTCTTGTGTACACGTCAGCAACATTGGCTGCAGCAAGTGCCAATTGTCTTCCCGTCATCACCTTCTTTGTGGCGCTTTTACTTAGGATGGAGGTGTTGAGGTTGAAATCAATAGCAGGAATTGCAAAGCTAGCAGGAATATTATTGTGTATTGGTGGTGTGGGAATGTTGGCATTTTACAAAGGCCCTCAATTCAACTTGTTTAGCAAACATCATCTCTTTTCTCTCCATAACCCTAATCACCATTCTTCTTCTCTTGCATTACCCAAATCTTGGTTGAAGGGTTGCTTTTTGATGCTAGCTTCCAATACCTTATGGAGCATTTGGGTTGTTCCTCAGGGCATGATGACCGCAGTTACGTTTTGGCTTCAAGCTTGGGTTATTGAGAAGAAAGGACCAGTTTATTTAGCCATGTCTACACCTTTGGCTCTTATCATTACAACCTTCTTTTCTGCTATTTTTCTTGGAGAGAATATCACCCTAGGAAGTACTTTAGGAGGAACGTTGTTGGTGGGAGGGCTGTATTTTGTGCTATGGGGAAAGAGCAAAGAACAAAAAATAAGTGAAGAATTATTGAAAGAAGGTAGCAAAGACAACACTAAATTAGGAAATGATGAAAATGCAACATCTTCACTGGAAAATGTCTGA | 918 | 40.52 | MMGEKKKGLLVVILIQAINAGMFLLSKAALNAGMNHYVYIFYRQATATLFLSPLAFFRWKDAPPLTFFTFCKIFVLSLFGIAICLNLYGIALVYTSATLAAASANCLPVITFFVALLLRMEVLRLKSIAGIAKLAGILLCIGGVGMLAFYKGPQFNLFSKHHLFSLHNPNHHSSSLALPKSWLKGCFLMLASNTLWSIWVVPQGMMTAVTFWLQAWVIEKKGPVYLAMSTPLALIITTFFSAIFLGENITLGSTLGGTLLVGGLYFVLWGKSKEQKISEELLKEGSKDNTKLGNDENATSSLENV | 305 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 9835323 | 9844407 | + | Lsi10G007020.1 | Lsi10g00702 | 672259 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi10g00702 | 305 | PANTHER | WAT1-RELATED PROTEIN | 206 | 278 | IPR030184 | GO:0016021|GO:0022857 | |
| Lsi10g00702 | 305 | PANTHER | WAT1-RELATED PROTEIN | 10 | 206 | IPR030184 | GO:0016021|GO:0022857 | |
| Lsi10g00702 | 305 | PANTHER | WAT1-RELATED PROTEIN | 10 | 206 | - | - | |
| Lsi10g00702 | 305 | SUPERFAMILY | Multidrug resistance efflux transporter EmrE | 42 | 151 | - | - | |
| Lsi10g00702 | 305 | SUPERFAMILY | Multidrug resistance efflux transporter EmrE | 187 | 273 | - | - | |
| Lsi10g00702 | 305 | Pfam | EamA-like transporter family | 7 | 132 | IPR000620 | GO:0016020|GO:0016021 | |
| Lsi10g00702 | 305 | PANTHER | WAT1-RELATED PROTEIN | 206 | 278 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Lsi01g01125 | Lsi10g00702 | CCT |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi01g01129 | Lsi-Chr1:9418589 | Lsi10g00702 | Lsi-Chr10:9835323 | 3.81E-52 | dispersed | |
| Lsi10g00702 | Lsi-Chr10:9835323 | Lsi01g01401 | Lsi-Chr1:12138098 | 2.29E-47 | dispersed | |
| Lsi10g00701 | Lsi-Chr10:9824531 | Lsi10g00702 | Lsi-Chr10:9835323 | 3.14E-139 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi10g00702 | - | - | csv:101202788 | 414.075 |