Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00705 ATGCTAATACCCAGATTTCGACCTTCCTTAATTCTTCAAAATTCTTTCATTGGGTCAACTTTCGCAGCTACCCATGTCGCCTCTTTCCACTCTACACCTGCTTCCTGCGATAAATGGAAGAGCAAATGGAAATTTGGTGTAAGGTTATTGGGAGTTGACAGTTGCAGAATGCAATTCTGGCTTTATTGGGACAGCATTCCACATAGAAAGCAGCAGTTTTTGTGTGTGTCTAAAGAGCTCCTGTATACTAGGAAAGATGTTGGACATGGAAAGGAGCCATCAAAGGTATGTCAACTCAATCCATTAGGTGATTATTTTTTCTTTGTAGTACTCGATTATAAATGCATGATTGGTGTAATGTCTATCCCATTTCACGAAAACAATAGTAATTATGTTAGATATGTAACCCGTCAAAGGCGTGCTGATGCAAAAAAGGCTCTAAAGGACCTCCTCTACAACAGTGGATCTACCTTTCAGGTATGCCCTCTGATTCCCAGATGCACATATCGAATTTTAAAACAAGCATTTCTAGGATTTAATGATTCACAAAAGTGGAGTCATCCTAAAAAGGAATCGAAGTGGAGTCTTAGTGATCACTGGTCATCTGATGAGTCATCCGATCAATCGGGTAACTGTGATAAGAAAGGACGAGCGAAGTCTTCAATGCGAAATTTTGGTAAATCCCAGCACAAGAGACCAAAACGCAAGTTTAGAAGAGAGAGTTCTGTTAATGACTTCAACAATGATTTCGAGACAATCTTTCACGCGACATTTGGCAACAGATCATATACTTGGTCCTTTGGCTCATTTAAGGAGACCTCTCAAGATACAGCATCTGGTTTCGGGTGGACAGAGCCTCCGAACTGGAAGAACCGAAGAACTACAGAATGGGATAATTCAAGTGATTGCGAGTCTGATGAGGAGACGACCCCTGATGTAGGATCACGTTCAGATAGAACTATACTCGGTTTGCCACAAACAGGTCCTTTGAAGATAGAAGAAGTTAAAACGGCGTTCCGCTTGTCTGCTTTAAAATGGCATCCTGATAAGCATCAAGGATCTTCCCAGGCAATGGCTGAAGAGAAATTCAAACTTTGTGTTAATGCATACAAGTCCTTGTGTTGTGCACTTTCTCCAGGTTAA 1143 41.12 MLIPRFRPSLILQNSFIGSTFAATHVASFHSTPASCDKWKSKWKFGVRLLGVDSCRMQFWLYWDSIPHRKQQFLCVSKELLYTRKDVGHGKEPSKVCQLNPLGDYFFFVVLDYKCMIGVMSIPFHENNSNYVRYVTRQRRADAKKALKDLLYNSGSTFQVCPLIPRCTYRILKQAFLGFNDSQKWSHPKKESKWSLSDHWSSDESSDQSGNCDKKGRAKSSMRNFGKSQHKRPKRKFRRESSVNDFNNDFETIFHATFGNRSYTWSFGSFKETSQDTASGFGWTEPPNWKNRRTTEWDNSSDCESDEETTPDVGSRSDRTILGLPQTGPLKIEEVKTAFRLSALKWHPDKHQGSSQAMAEEKFKLCVNAYKSLCCALSPG 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 9865443 9869957 + Lsi10G007050.1 Lsi10g00705 672262

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00705 380 SMART dnaj_3 316 378 IPR001623 -
Lsi10g00705 380 MobiDBLite consensus disorder prediction 278 324 - -
Lsi10g00705 380 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 1 379 - -
Lsi10g00705 380 Pfam DnaJ domain 321 374 IPR001623 -
Lsi10g00705 380 SUPERFAMILY Chaperone J-domain 321 373 IPR036869 -
Lsi10g00705 380 CDD DnaJ 321 374 IPR001623 -
Lsi10g00705 380 MobiDBLite consensus disorder prediction 195 240 - -
Lsi10g00705 380 Gene3D DnaJ domain 321 374 IPR036869 -
Lsi10g00705 380 ProSiteProfiles dnaJ domain profile. 317 378 IPR001623 -
Lsi10g00705 380 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN-RELATED 1 379 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00705 - - - csv:101222821 414.075
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01738 Lsi-Chr3:28760983 Lsi10g00705 Lsi-Chr10:9865443 4.91E-08 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1232 Blo04g00972 . . . Bpe15g00393 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda14g01062 . . Bma03g01038 . Sed01g0039 . . . . . . . . Bhi10g02342 Tan07g0892 Cmetu11g0604 . Hepe08g1262 . . Cla02g00075 Cam02g0076 Cec02g0078 Cco02g0070 Clacu02g0074 Cmu02g0073 Cre02g0413 Lsi10g00705 . . Cme11g00079
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008268 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 3 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi10g00705 Lsi_Chr10 FPKM 16.164129 17.255682 8.675184 8.801641 11.105863 10.84414 12.825583 14.285435 14.347007 15.934872