Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00706 ATGCTGGAAATTTCACCTTCACCGGAAAACTCTACCGCCACCGTCGCTGCCACTGCCGTCGTGAACCGGGACGCCGAGGAAGACGGTGCAGTAGCCTCTGCCGGACTTCCGGAGGAGGCTGACCGGAACTGGCCCGGTAATCGGTGGCCGCGAGAGGAGACTATGGCTTTGCTGAAGGTTCGGTCGAGTATGGATACTGCGTTTAGGGATGCAAGCTTGAAAGCTCCTCTATGGGAAGAAGTTTCCAGGAAATTGGCTGAGCTTGGGTATAGTCGAAATGCGAAAAAATGCAAAGAGAAGTTTGAGAACATTTATAAGTATCACAAAAGGACTAAAGATGGCAGATCAGGGAAATCGAATGGGAAAAACTATAGGTATTTTGAGCAATTAGAAGCTCTAGATAATCATCCATTGCTTCCCGCTCAAGTTGATTTAATGGAAGAAATCCCAAGGATTATCCCAAACAATGTTGTTCACAATGCAATTCCATGTTCCGTAGTAAACCCGGGTGCAAATTTTGTTGAAACTACCACCACTTCGATATCGACATCGACCACGTCTTGTTCGAGCAAAGAATTGGGTGGAACAAGGAAGAAGAAGAGGAAGTTTGTGGAGTTCTTTGAGAGGTTAATGAACGAGGTGATTGAGAAGCAGGAGAAATTGCAAAAGAAGTTTGTGGAGGCCTTGGAGAAATGTGAAGTAGAGAGGATAGCTAGAGAAGAAGAATGGAAGATGCAAGAATTAGCTCGAATCAAGAAAGAGAGAGAGCGTTTAAATCAAGAGAGATCGATTGCGGCTGCAAAGGATGCAGCTGTTCTTTCATTCTTGAAGGTGTTCTCTGAACAGGTGGGCACAGTGCAGTTCCCTGAGAACTTGATTTTGATGGAGAATTTGACTGAGAAGCAAGATGATGGTAATGTTGACAGAAATACAAGCACTCAAGAGAATATCAACAATGGTAATTCAAATCAGATTAGCTCGTCTCGATGGCCGAAAGAAGAGATCGATGCTCTGATTCAGCTTAGGACTAATCTACAGATGAAGTACCAAGATACTGGCCCTAAAGGTCCTCTCTGGGAGGAAATATCTCTAGCCATGAAAAAAGTAGGGTATGATAGAAGTGCAAAGAGGTGTAAAGAGAAATGGGAAAACATCAACAAATACTTCAAAAGAGTAAAGGAAAGCAACAAAAAGCGACCCGAGGATTCGAAGACATGCCCTTATTTCCAGCAACTTGACGCATTATACAAACAGAAATCCAAGAAAGTCATCAACAACAATCCAGCTAATCCAAATTACGAACTAAAACCCGAGGAACTATTGATGCACATGATGGGCGGTCAAGAAGAAAGCCACCAACCCGAATCAGCAACAGACGACGGTGATCAGAACCAAGAAGATGAAGTCGAAGTCGAAGGCGAAGGCGAAGATGAAGATGAGGATTATCAGATTGTAGCCAACAACAGCAGTGATCAAATGGAAGTAAACTAG 1491 43.8 MLEISPSPENSTATVAATAVVNRDAEEDGAVASAGLPEEADRNWPGNRWPREETMALLKVRSSMDTAFRDASLKAPLWEEVSRKLAELGYSRNAKKCKEKFENIYKYHKRTKDGRSGKSNGKNYRYFEQLEALDNHPLLPAQVDLMEEIPRIIPNNVVHNAIPCSVVNPGANFVETTTTSISTSTTSCSSKELGGTRKKKRKFVEFFERLMNEVIEKQEKLQKKFVEALEKCEVERIAREEEWKMQELARIKKERERLNQERSIAAAKDAAVLSFLKVFSEQVGTVQFPENLILMENLTEKQDDGNVDRNTSTQENINNGNSNQISSSRWPKEEIDALIQLRTNLQMKYQDTGPKGPLWEEISLAMKKVGYDRSAKRCKEKWENINKYFKRVKESNKKRPEDSKTCPYFQQLDALYKQKSKKVINNNPANPNYELKPEELLMHMMGGQEESHQPESATDDGDQNQEDEVEVEGEGEDEDEDYQIVANNSSDQMEVN 496
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 9874458 9876465 - Lsi10G007060.1 Lsi10g00706 672263

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00706 496 ProSiteProfiles Myb-like domain profile. 47 105 IPR001005 -
Lsi10g00706 496 MobiDBLite consensus disorder prediction 26 48 - -
Lsi10g00706 496 Coils Coil 241 268 - -
Lsi10g00706 496 ProSiteProfiles Myb-like domain profile. 322 386 IPR001005 -
Lsi10g00706 496 PANTHER - 1 492 - -
Lsi10g00706 496 MobiDBLite consensus disorder prediction 309 329 - -
Lsi10g00706 496 PANTHER TRIHELIX TRANSCRIPTION FACTOR GT-2-LIKE 1 492 - -
Lsi10g00706 496 SMART sant 45 107 IPR001005 -
Lsi10g00706 496 SMART sant 326 388 IPR001005 -
Lsi10g00706 496 CDD GT1 328 393 - -
Lsi10g00706 496 Gene3D - 330 391 - -
Lsi10g00706 496 Gene3D - 49 110 - -
Lsi10g00706 496 MobiDBLite consensus disorder prediction 303 329 - -
Lsi10g00706 496 Pfam Myb/SANT-like DNA-binding domain 328 415 IPR044822 -
Lsi10g00706 496 Pfam Myb/SANT-like DNA-binding domain 47 133 IPR044822 -
Lsi10g00706 496 MobiDBLite consensus disorder prediction 446 496 - -
Lsi10g00706 496 CDD GT1 47 112 - -
Lsi10g00706 496 Coils Coil 204 231 - -
Lsi10g00706 496 MobiDBLite consensus disorder prediction 460 484 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00706 - - - cmo:103499654 849.351
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01132 Lsi-Chr2:13275137 Lsi10g00706 Lsi-Chr10:9874458 4.98E-20 dispersed
Lsi08g00289 Lsi-Chr8:7387147 Lsi10g00706 Lsi-Chr10:9874458 3.41E-128 dispersed
Lsi08g00290 Lsi-Chr8:7501757 Lsi10g00706 Lsi-Chr10:9874458 2.61E-16 dispersed
Lsi08g01612 Lsi-Chr8:24067729 Lsi10g00706 Lsi-Chr10:9874458 2.98E-07 dispersed
Lsi09g00104 Lsi-Chr9:941739 Lsi10g00706 Lsi-Chr10:9874458 4.17E-19 dispersed
Lsi10g00706 Lsi-Chr10:9874458 Lsi03g02220 Lsi-Chr3:33225176 7.85E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1234 Blo04g00970 . . . Bpe15g00395 . . . Cmo02g00617 Cmo20g01084 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma03g01036 . Sed01g3751 . . . Cma20g01075 . . Cpe05g01074 . Bhi10g02341 Tan07g0890 Cmetu09g0584 . Hepe08g1260 . . Cla02g00074 Cam02g0075 Cec02g0077 Cco02g0069 Clacu02g0073 Cmu02g0072 Cre02g0412 Lsi10g00706 . . Cme11g00078
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008720 0 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 2 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26039 PF13837 Myb_DNA-bind_4 9.80E-22 CL0123 Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi10g00706 Lsi_Chr10 FPKM 10.569298 11.931943 9.132267 9.485729 7.436655 6.826383 8.093864 7.852428 7.763936 8.544116