Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00708 ATGGTGATGATAAGGTCATTAAAAGCATCCTCCCCACAAAGCCTTCCACAGCTTAGAAGGCTCAACTGCACAAGAGGCGAGGGTGAGGAGGTAACTGATACATCTGGAGGATGCGGGGCGAGTTTCGTAGTTGACATTGTCTCGGAACAATTTGAAGGGAAAAGGTTGCTTGAGCGACATCGATTGGTGAATGCTGCTCTGCAGGAGGAAATGAAGCAGATTCATGCTCTCTCCATCAAGAAGGCTTTAACCCCACAACAATGGAAGCAACAACAAGAAGAATCTGAAAAATCAAAATCTGCAGCTTAG 309 45.95 MVMIRSLKASSPQSLPQLRRLNCTRGEGEEVTDTSGGCGASFVVDIVSEQFEGKRLLERHRLVNAALQEEMKQIHALSIKKALTPQQWKQQQEESEKSKSAA 102
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 9886922 9890044 + Lsi10G007080.1 Lsi10g00708 672265

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00708 102 PANTHER BOLA-LIKE PROTEIN-RELATED 30 95 IPR045115 GO:0051537|GO:0097428
Lsi10g00708 102 Gene3D - 25 101 IPR036065 -
Lsi10g00708 102 Pfam BolA-like protein 36 86 IPR002634 -
Lsi10g00708 102 PANTHER BOLA-LIKE PROTEIN 2 30 95 - -
Lsi10g00708 102 SUPERFAMILY BolA-like 30 92 IPR036065 -
Lsi10g00708 102 MobiDBLite consensus disorder prediction 83 102 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00708 - - - csv:101215699 116.701
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1235 . . . . Bpe15g00396 Bpe13g00012 . . . Cmo20g01081 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda14g01060 . . Bma03g01035 Bma06g00528 Sed05g3844 . . . Cma20g01074 . . . . Bhi10g02340 Tan07g0888 Cmetu11g1866 . Hepe08g1259 . . Cla02g00073 Cam02g0074 Cec02g0075 Cco02g0068 Clacu02g0072 Cmu02g0071 Cre02g0411 Lsi10g00708 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012275 1 1 0 2 2 1 1 1 1 1 1 1 1 0 1 1 1 0 1 1 1 1 1 1 1 1 0 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi10g00708 Lsi_Chr10 FPKM 5.345395 5.853677 8.314959 8.227871 6.119017 5.457078 6.095603 7.090074 6.72467 5.989405