Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00713 ATGGTCAGGCCACACGATCTCTTCATCACTGTTCCCACTCACTTCCGTTGCCCAATTTCTCTCGACCTCATGCAATCTCCCGTCAGTTTGACCACCGGCGTCACCTACGACCGCTCCAACATCCAGCGCTGGCTTGACTCCGGCCATAATACTTGCCCCGCCACCATGCAGATCCTCCACAACTACGACTTCGTTCCCAATTCTAATCTCAAGCGACTCATTCAGATTTGGTCCGATTCCCTCCAATTCCCCCTCTCTACACTCGCCCAATCGGATCATATTCTTACCGCCGTCGACGATTTGCGCACAAATGGAAATGGCTCTGTTTCTGCTTCTCTGTCGAAGCTGCTCTGTTTCGGTGCACGATTGGAGCAGAACGTTAAGTTTCTCGGGAGGATTCATGGCTTCGTGCCGGTGCTTCTTGATGTTCTTCGTTGTAGAGATGTTGATTGTTCGGAACTGGTGGTTAGAGTTTTGGATTTGGTGAGATGCGAAATTGAGGATCGGGAGGAGTTTATGAACATGATGTTGAAAAGCGATCGCGATTGTTTGAGATCTCTGGTTCTCGTTCTACAGCGAGGAAGTTCGGAATCGCGAATTGGAACAGCGAGGCTTCTCGAGTGCGTCGCCATTAACGCCGTATCAAAGAACCTAATCGCCGAAAACGAAGGGATTCTTCACGAATTGATTGGAGTAATTGGAATAGACGAAGATCCAAAACTAATCGAATCAGTACTCTCGTGCTTGATCGCAATATCAATGCCGAAACGAGTGAAAATCAAACTGGTTCGATTAGGGGTAATAAAAGCCCTAACCAGACTGCTGAAGCACCGGAACGCCAGCGTAGGAGTAACGGAGAAGGTTCTGAGACTGTTGGCGGCGGCGGCGGCGGTGGAGGAAGGGCGGTCGGAGATGTTGGAGAACGGAGGAGAATGCGTCGGGGGGATGGTGAGGAAAGTGATGAAGGTGTCGAGCGCGGCGACAGAGCAGGCGGTGACGGCGCTGTGGTGCATATGCTATTTGTTCCGGGAAGAGAGGGCGGCGGAGGCGGTGGCGGAGGCGAAAGGGGTTGAGAAGATATTGATGCTGATGCAGAGCCACTGCCCGGCGTCGGTCAGGCAGATGGCCAAAGATCTTCTAAAGATTTTGAAGGTTAATTCCATGTCCTCTTGCTTATCAATTTATGATACTAACAATTCTTACATTATGCCCTTTTGA 1218 50.57 MVRPHDLFITVPTHFRCPISLDLMQSPVSLTTGVTYDRSNIQRWLDSGHNTCPATMQILHNYDFVPNSNLKRLIQIWSDSLQFPLSTLAQSDHILTAVDDLRTNGNGSVSASLSKLLCFGARLEQNVKFLGRIHGFVPVLLDVLRCRDVDCSELVVRVLDLVRCEIEDREEFMNMMLKSDRDCLRSLVLVLQRGSSESRIGTARLLECVAINAVSKNLIAENEGILHELIGVIGIDEDPKLIESVLSCLIAISMPKRVKIKLVRLGVIKALTRLLKHRNASVGVTEKVLRLLAAAAAVEEGRSEMLENGGECVGGMVRKVMKVSSAATEQAVTALWCICYLFREERAAEAVAEAKGVEKILMLMQSHCPASVRQMAKDLLKILKVNSMSSCLSIYDTNNSYIMPF 405
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 9983755 9984972 - Lsi10G007130.1 Lsi10g00713 672270

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00713 405 PANTHER WDSAM1 PROTEIN 5 405 IPR045185 GO:0061630
Lsi10g00713 405 CDD RING-Ubox_PUB 15 57 IPR045210 -
Lsi10g00713 405 Pfam U-box domain 11 78 IPR003613 GO:0004842|GO:0016567
Lsi10g00713 405 Gene3D - 84 393 IPR011989 -
Lsi10g00713 405 ProSiteProfiles U-box domain profile. 10 84 IPR003613 GO:0004842|GO:0016567
Lsi10g00713 405 SMART Ubox_2 14 77 IPR003613 GO:0004842|GO:0016567
Lsi10g00713 405 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 10 83 IPR013083 -
Lsi10g00713 405 SUPERFAMILY RING/U-box 6 79 - -
Lsi10g00713 405 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 266 310 IPR000225 GO:0005515
Lsi10g00713 405 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 27-RELATED 5 405 - -
Lsi10g00713 405 SUPERFAMILY ARM repeat 106 396 IPR016024 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00713 - - - csv:101221867 633.639
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi01g01136 Lsi10g00713 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi10g00713 Lsi-Chr10:9983755 Lsi10g01136 Lsi-Chr10:15647612 8.07E-35 dispersed
Lsi01g01136 Lsi-Chr1:9537778 Lsi10g00713 Lsi-Chr10:9983755 2.76E-142 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1266 . . Bda04g00334 . . . . . Cmo02g00625 . Cma03g01083 Cma07g00789 Car03g00973 Car07g00775 Sed10g0492 Cpe19g00539 Cpe10g00346 Bhi03g01378 Tan03g1327 Cmetu08g0065 . Hepe04g1125 . . Cla01g01528 Cam01g1597 Cec04g1242 Cco04g1311 Clacu01g1622 Cmu01g1508 Cre04g1187 . . Cone6ag1295 . Lsi01g01136 . . Cme08g01071 . . . . . Bpe06g00274 . . . . Cmo07g00812 . . . . Cpe05g01067 . Bhi10g02332 Tan07g0873 Cmetu11g1820 . Hepe08g1253 . . Cla02g00066 Cam02g0068 Cec02g0070 Cco02g0063 Clacu02g0067 Cmu02g0066 Cre02g0405 Lsi10g00713 Csa06g02795 Chy02g01040 Cme11g00070
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002606 1 2 1 0 1 2 3 2 2 1 2 2 3 2 2 2 2 4 3 2 2 3 2 3 2 2 2 1 2 1 59
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi10g00713 Lsi_Chr10 FPKM 34.348785 35.551373 6.106961 6.311582 9.591463 8.572063 9.173068 21.590366 21.88398 23.417398