Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00715 ATGACTCCAGCTTTCTCCTCATCCTCCGCCGCCGCCCAGCGACTTATCCGCTGCAGCGCCTCACTTCGTCGCACCCACGCCCCACACCGACCCTCCTCGATGTCACCTCCACCGAGGAAGCTGAAGCCAATGACGGAGATAATGGCCAAGGCCAAGTATGTGGTTCTCGAACGGGACGATTACGACGACGTCAGGTGCGAGGAATGTGGCTCCGGTGACCGGGATGATGAGCTGCTGTTGTGTGATAAATGCGATAAGGGATTTCATATGAAATGTGTAAGTCCGATCGTCGTTAGGGTCCCGATTGGATCCTGGCTTTGCCCCAAATGCTCTGGCCAAAGAAGAGTAAGAAGCTTTTCCCAGAAGAAGATTATCGATTTTTTCGGAATTCAGAAATGTAACGACGCAGAAGTCCCTTATCTGTCTGCTCAAGCTATAAAGCGTAGGAGACGATTACGGTCATTGGTGTGGCAGAAGAAAAGGAGAAGATTACTACCATTTCTTCCAAGTGAAGATCCTGATCGCAGATTAAAACAGATGGGTTCACTTGCTACAGCTTTAACAACATTGCAAATGGAGTTTAGTGATGATTTGACTTACGTGCCGGGCATGGCTTCGAGGTCTGCTAATCAGGCAGAGTTCGAAGATGGTGGAATGCAGATTCTTTCCAAAGAGGATACTGAGACCTTGGAACTCTGCAGAGCAATGAGCAGAAGAGGCGAATGCCCTCCCCTTTTGGTTGTTTTTGATTCATGTGAAGGTTTTACGGTAGAAGCTGATGATCAAATTAAGGATATGACTTTTATCGCTGAATATACTGGTGATGTGGATTATCTTAAGAACCGTGAACATGATGATTGTGATAGTATGATGACCCTTCTTTCAGCAAAAGATCCATCTAGAAGTCTTGTCATCTGCCCTGACACACGTGGGAACATCGCTCGGTTTATTAATGGAATAAATAATCATTCTCCAGAAGGTAAGAAGAAACAGAACTGTAAATGTGTGAGATACAATGTAAACGGCGAATGCCGGGTCATTTTGGTTGCTATTCGGGATATTGCTAAAGGGGAGAGGCTTTATTATGACTACAATGGATATGAGTATGAGTACCCTACTCATCATTTCAGTAATTTCTACTGCATTCCCTCGGCCAAGGTCGAGGCTGAGGCTAGGACTGGGCCAGGAGGGAGGGTGGGGGAGATTCTTGGGAGTGGAATAAAAGCAGAAGGAGAAGTGGGTGAGATAGTGATGAAACACTTGAGAAGCTGGAAAATAGATGCTCCAAAAACCAGCAGCCTCAAGAAATGGCTTGTGATGAAGCTCAAAATGGACGGCTATGATTCTTCTGATCTCTGTCACACTTCTTGGGTCACTTCCATGGGATGCCCAGCCGGGGATTATGAGTACATAGAGATGAAAATGAAGGATGAGTATGGGAGTATAAAGAGGTTGATAATAGACATAGAATTCAAAGCTCAATTTGAAGTAGCAAGAGCAACAGAAAAGTACAAGCAGCTTACAGAAGCACTTCCATCAGTGTTTGTAGGAAGTGAAGAGAAAGTTAAGAGAATAATCTCAGTTTTATGTTCAGCAGCCAAACAGTCCCTTAAGGAAAGTGGGCTCCATATTCCTCCTTGGAGAACTTCCACTTACATGCACTGCAAATGGCTACTACACTCTATCAATAATAATAATAATAGAGAAAATAATTATATAATTAGTGAGAATAATTTAAATAATAAGTATTGGAATCCTCCTATGGTTAACCAAATTTCAAGGAAGGTTTGGAGTGGTTCTTCTGCCTTGTCCACTCAATTTTCTCACATGAGTATTAATTGCTGCTGA 1848 43.72 MTPAFSSSSAAAQRLIRCSASLRRTHAPHRPSSMSPPPRKLKPMTEIMAKAKYVVLERDDYDDVRCEECGSGDRDDELLLCDKCDKGFHMKCVSPIVVRVPIGSWLCPKCSGQRRVRSFSQKKIIDFFGIQKCNDAEVPYLSAQAIKRRRRLRSLVWQKKRRRLLPFLPSEDPDRRLKQMGSLATALTTLQMEFSDDLTYVPGMASRSANQAEFEDGGMQILSKEDTETLELCRAMSRRGECPPLLVVFDSCEGFTVEADDQIKDMTFIAEYTGDVDYLKNREHDDCDSMMTLLSAKDPSRSLVICPDTRGNIARFINGINNHSPEGKKKQNCKCVRYNVNGECRVILVAIRDIAKGERLYYDYNGYEYEYPTHHFSNFYCIPSAKVEAEARTGPGGRVGEILGSGIKAEGEVGEIVMKHLRSWKIDAPKTSSLKKWLVMKLKMDGYDSSDLCHTSWVTSMGCPAGDYEYIEMKMKDEYGSIKRLIIDIEFKAQFEVARATEKYKQLTEALPSVFVGSEEKVKRIISVLCSAAKQSLKESGLHIPPWRTSTYMHCKWLLHSINNNNNRENNYIISENNLNNKYWNPPMVNQISRKVWSGSSALSTQFSHMSINCC 615
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 10008638 10016446 + Lsi10G007150.1 Lsi10g00715 672272

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00715 615 Pfam PHD-finger 65 111 IPR019787 -
Lsi10g00715 615 CDD SET_ATXR5_6-like 240 376 - -
Lsi10g00715 615 ProSitePatterns Zinc finger PHD-type signature. 66 110 IPR019786 -
Lsi10g00715 615 TIGRFAM A_thal_3542: uncharacterized plant-specific domain TIGR01615 436 560 IPR006502 -
Lsi10g00715 615 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR5 8 374 - -
Lsi10g00715 615 Pfam PDDEXK-like family of unknown function 427 558 IPR006502 -
Lsi10g00715 615 SMART PHD_3 65 111 IPR001965 -
Lsi10g00715 615 SMART set_7 243 371 IPR001214 GO:0005515
Lsi10g00715 615 ProSiteProfiles Zinc finger PHD-type profile. 63 113 IPR019787 -
Lsi10g00715 615 SUPERFAMILY FYVE/PHD zinc finger 32 111 IPR011011 -
Lsi10g00715 615 PANTHER HISTONE ACETYLTRANSFERASE 8 374 - -
Lsi10g00715 615 Pfam SET domain 283 365 IPR001214 GO:0005515
Lsi10g00715 615 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 124 IPR013083 -
Lsi10g00715 615 SUPERFAMILY SET domain 237 368 IPR046341 -
Lsi10g00715 615 Gene3D SET domain 149 377 IPR046341 -
Lsi10g00715 615 ProSiteProfiles SET domain profile. 243 365 IPR001214 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00715 K24406 ATXR5_6; [histone H3]-lysine27 N-methyltransferase [EC:2.1.1.369] - csv:101221402 697.582
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g00010 Lsi-Chr9:80825 Lsi10g00715 Lsi-Chr10:10008638 2.11E-139 dispersed
Lsi10g00715 Lsi-Chr10:10008638 Lsi02g00757 Lsi-Chr2:6968140 9.37E-28 dispersed
Lsi11g00991 Lsi-Chr11:16585178 Lsi10g00715 Lsi-Chr10:10008638 2.03E-08 dispersed
Lsi10g00715 Lsi-Chr10:10008638 Lsi05g01652 Lsi-Chr5:24169313 1.37E-30 transposed
Lsi10g00715 Lsi-Chr10:10008638 Lsi09g01284 Lsi-Chr9:20689457 1.99E-30 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1275 . . . . . . . . Cmo02g00628 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cpe05g01064 . Bhi10g01662 Tan07g0871 Cmetu11g0434 . Hepe08g1250 . . . . . . . . . Lsi10g00715 . . Cme11g00067
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001827 2 3 2 2 2 2 5 2 2 2 2 2 3 2 2 4 2 2 4 2 2 2 2 1 1 2 2 4 1 2 68
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26040 PF04720 PDDEXK_6 1.90E-47 No_clan Lsi TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi10g00715 Lsi_Chr10 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0