Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00718 ATGCTCCCCAGAAAACCCCCTTTCCCCATTTCCAAATCCACTCTGCTTTTCCTTTCCATGGCTTCCCTCTCCTTCCTCTCTTTCCTCTCCCTCTTCTTCTTCTTCTTCCTCTCTTTCTCCTCCTCCGCCGCCCGCCACCGCCACCACCTCTCAACCCATTTCACCAACCCACCTTCCAACGACGACATCCTTCACGCCTGCAAGGCCACCCGTTTTCCCGATCAATGCGGATCTTCCCTTTCTCGCTCCTCTCTCCCTCCCAATCCCACCCCTCTTCAGATCCTCCAATCCGCCGTCGCCCTCTCATCCGACGGCTTAGCCACTGCTCAGTCCATGGTTAATCAGATTCTCGATTCCTCTGCTAAGAATCTCAATCGGACCACCGCTGCCAAGAATTGCCTTGAGGTGCTGCGGAATTCCGATTACCGAATTTCTCTCACCAACGACGCTCTCCGCCGTGGTCGGACCAAGGATGCCCGCGCCTGGCTGAGCGCGTCCCTGCTCTACCATTACGATTGCTGGTCTGCGCTCAAGTACGCTAACGACACTCAATTGGTTGACAAAACCATGGCGTTTCTTGATTCTCTAATCGGCCTCTCCAGCAACGCGCTAAGTATGTTGGTGGCTTACGACATTTCCGGCAACGATACGGCGGCGTGGACACCACCGAGGACGGAGCGGGATGGGTTCTGGGAGGGCGGTGGTGGTGGATCTGGGTTGGGGTTTAGCGGTGGGTTTCCGTCGAAGGTGGCGGCTGATGCGACGGTGTGCAAGGATGGCGCTGGGGGATGTTACGGGACTGTTCAGGAAGCTGTGGACGCGGCGCCAGAGAATGCGGCGGCGCGTAGGTTTGTGATTCATATTAAAGAAGGTGTTTATGAGGAAATCGTGAGGGTTCCGTTAGAGAAGAAGAATGTGGTGTTTTTAGGAGATGGGATGGGCAAAACGGTAATTACATGCTCACTTAATGTGGGCCAGCCTGGGATTTCCACTTACAATACCGCCACCGTTGGAGTACTTGGTGATGGATTCATGGCTAGCGGTCTCACCATTCAGAACACAGCCGGGCCTGATGCCCATCAAGCTGTGGCCTTTAGATCAGACAGTGATCTCTCAGTCATTCAAGACTGTGAGTTTATAGGCAACCAAGACACTCTCTACGCTCATTCCCTTCGCCAATTCTACAAATCTTGCAAGATTCAAGGCAATGTAGATTTCATCTTTGGAAACTCAGCTTCCATCTTCCAAGATTGCGAGATCCTAGTCCGCCCTCGACAGCTCAAGCCCGAGAAAGGCGAAAACAACGCCATCACTGCTCAGGGCAGGACCGACCCTGCTCAATCGACTGGTTTCGTGTTTCAAAACTGCCTCATAAATGGCACCCAGGAGTACATGTCATTGTACTACAGCAAGCCTAAAGTGCATAAGAACTTCTTGGGGAGGCCATGGAAGGAGTACTCGAGGACGGTTTTCATTCATTGTAATCTCGAGGCTCTTGTCACGCCGTCGGGGTGGATGCCGTGGAGCGGGGATTTTGCTTTGAAGACTCTCTTCTATGGAGAGTTTGAGAATTCTGGAGCGGGGTCAAAGACGTCGGAGAGAGTCGGGTGGAGTAGTCAAATTCCAGCACAACATGTTTTTAGTTACTCTGTTCAGAATTTCATTCAGGGAGATGAATGGATTCCTTCATCTGAGTCATCTAATGAACAAAAAATGTTGAACAAGAAAAGTAAAGACGTGAAATTAGATTAG 1752 51.6 MLPRKPPFPISKSTLLFLSMASLSFLSFLSLFFFFFLSFSSSAARHRHHLSTHFTNPPSNDDILHACKATRFPDQCGSSLSRSSLPPNPTPLQILQSAVALSSDGLATAQSMVNQILDSSAKNLNRTTAAKNCLEVLRNSDYRISLTNDALRRGRTKDARAWLSASLLYHYDCWSALKYANDTQLVDKTMAFLDSLIGLSSNALSMLVAYDISGNDTAAWTPPRTERDGFWEGGGGGSGLGFSGGFPSKVAADATVCKDGAGGCYGTVQEAVDAAPENAAARRFVIHIKEGVYEEIVRVPLEKKNVVFLGDGMGKTVITCSLNVGQPGISTYNTATVGVLGDGFMASGLTIQNTAGPDAHQAVAFRSDSDLSVIQDCEFIGNQDTLYAHSLRQFYKSCKIQGNVDFIFGNSASIFQDCEILVRPRQLKPEKGENNAITAQGRTDPAQSTGFVFQNCLINGTQEYMSLYYSKPKVHKNFLGRPWKEYSRTVFIHCNLEALVTPSGWMPWSGDFALKTLFYGEFENSGAGSKTSERVGWSSQIPAQHVFSYSVQNFIQGDEWIPSSESSNEQKMLNKKSKDVKLD 583
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 10056507 10059556 - Lsi10G007180.1 Lsi10g00718 672275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00718 583 PANTHER PECTINESTERASE 19 564 - -
Lsi10g00718 583 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 61 206 IPR035513 -
Lsi10g00718 583 Gene3D Invertase/pectin methylesterase inhibitor family protein 59 209 IPR035513 -
Lsi10g00718 583 Pfam Plant invertase/pectin methylesterase inhibitor 64 206 IPR006501 GO:0004857
Lsi10g00718 583 SUPERFAMILY Pectin lyase-like 250 563 IPR011050 -
Lsi10g00718 583 MobiDBLite consensus disorder prediction 562 583 - -
Lsi10g00718 583 PANTHER PECTINESTERASE 19 564 - -
Lsi10g00718 583 Gene3D - 247 571 IPR012334 -
Lsi10g00718 583 SMART PMEI_2 58 206 IPR006501 GO:0004857
Lsi10g00718 583 TIGRFAM PME_inhib: pectinesterase inhibitor domain 31 206 IPR006501 GO:0004857
Lsi10g00718 583 Pfam Pectinesterase 253 558 IPR000070 GO:0030599|GO:0042545
Lsi10g00718 583 CDD PMEI-like_3 66 206 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi10g00718 Lsi-Chr10:10056507 Lsi05g01321 Lsi-Chr5:20974152 2.42E-21 dispersed
Lsi10g00718 Lsi-Chr10:10056507 Lsi10g00719 Lsi-Chr10:10062257 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00718 - - csv:101221165 1009.59