Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00719 ATGCCTTCCCTTCTCTTTCTCTTCTTCCTCCCTCTACATTTCTCTTCCGCCGCAAACCAAACCCTCCGCCCTGAGATCGCCGCCGCCTGCACAGCCACTCGCTTCCCGGACCAATGCGTATCCTCCATCTCCCAATCCGACTGTCTTCCCCAGATTCCAACGCCGCTGCAGATTATTCAGGCCGCCGTCTGGCTCTCCTCGGAGAATCTCAAAACTGCTAAATCCATGGTGCAGGCCATTCTTGATTCCTCCGTGGAGAGCCCCAACCGCAACCGCACCGCCGCGGCGCTGAGCTGTCTGGAGGCGCTGGGTTACTCTGAATACCGAATTTCACTTTCCAACGACGCAATTCCGCTCGGTCGGACTAAAGACGCGCGCGCGTGGCTAAGCGCGTCGCTTAGTTACCAGACTGGTTGCCGGTCCGGGCTCAAGTACGTGAATGACACGCGCGAGGTGGATCAAACGATGTCGTTTCTTGATAAATTGACTATGCTGTCGAGCAACGCGCTGAGCATGGCGGTGGCGTACGATATTTTCGGGAATGAGATGGCGGCGTGGGGCCCACCGAGGACGGAGCGAGACGGGTTCTGGGAGGGGAGTAGTGGGACGGTGGTGGGGATGGGTTTGGGGATTCCGGCAAAGACGGAGGCGAACGCAACGGTGTGTAAGGACGGGAGTGAGGGGTGTTACACGACAGTGCAGGCGGCGGTGGATGCGGCGCCGGGAGAGTCGGCGGTGAGGTTTGTGATCCATGTAAAGGAAGGTGTTTACGAAGAGACTGTGAGAGTGGGATTGGAGAAGAAGAATTTGGTGCTTTTGGGAGATGGGATGGGCAAAACGGTCATTACGGGCTCCTTGAATGTGGGCCAGCCTGGGATCTCAACCTACAATTCGGCCACAGTCGGCCCTGATGCCCACCAAGCTGTGGCTTTTAGATCAGACAGCGATCTCTCAATCATACATAACTGTGAGTTTATAGGCAATCAAGACACTCTCTACGCTCACTCCCTTCGCCAATTCTACAACTCCTGTCGAATCCTAGGCAATGTGGACTTCATCTTTGGCAACTCAGCCTCCATCTTCCAAAACTGTCATATCTTAGTCCGCCCTCGCCAACTCAACGCTCGGCTCGGAGATGACAATCCCATCACTGCACACGGGAGGACCGACCCCGCGCAGTCGACTGGGTTCGTGTTCCAAAATTGCCTTGTAAATGGCACTGAGGAGTTCATGTCATTGTACTATGCCAATCCTCAAGCGCATAGGACCTTCTTGGGGCGACCGTGGAAGGAGTATTCGAGGACGGTTTTTATACATTGTGATCTTGGAGCTCTTGTTTCGTCGTCGGGGTGGATGCCGTGGAGTGGGAATTTTGGTTTGAAGACATTATATTATGGGGAGTATGAGAATTTTGGGATTGGATCGAATTCGTCGGAGCGAGTTGGATGGAGTAATCAGATCCCTGCTGAGTATGTTTTTAGTTACTCTGTTGAGAATTTCATCCAAGGAAATGAATGGATTCCTTCATCTTAG 1533 53.56 MPSLLFLFFLPLHFSSAANQTLRPEIAAACTATRFPDQCVSSISQSDCLPQIPTPLQIIQAAVWLSSENLKTAKSMVQAILDSSVESPNRNRTAAALSCLEALGYSEYRISLSNDAIPLGRTKDARAWLSASLSYQTGCRSGLKYVNDTREVDQTMSFLDKLTMLSSNALSMAVAYDIFGNEMAAWGPPRTERDGFWEGSSGTVVGMGLGIPAKTEANATVCKDGSEGCYTTVQAAVDAAPGESAVRFVIHVKEGVYEETVRVGLEKKNLVLLGDGMGKTVITGSLNVGQPGISTYNSATVGPDAHQAVAFRSDSDLSIIHNCEFIGNQDTLYAHSLRQFYNSCRILGNVDFIFGNSASIFQNCHILVRPRQLNARLGDDNPITAHGRTDPAQSTGFVFQNCLVNGTEEFMSLYYANPQAHRTFLGRPWKEYSRTVFIHCDLGALVSSSGWMPWSGNFGLKTLYYGEYENFGIGSNSSERVGWSNQIPAEYVFSYSVENFIQGNEWIPSS 510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 10062257 10064482 - Lsi10G007190.1 Lsi10g00719 672276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00719 510 PANTHER PECTINESTERASE 8 508 - -
Lsi10g00719 510 SUPERFAMILY Pectin lyase-like 216 509 IPR011050 -
Lsi10g00719 510 Gene3D Invertase/pectin methylesterase inhibitor family protein 23 175 IPR035513 -
Lsi10g00719 510 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 25 172 IPR035513 -
Lsi10g00719 510 TIGRFAM PME_inhib: pectinesterase inhibitor domain 4 171 IPR006501 GO:0004857
Lsi10g00719 510 Gene3D - 216 510 IPR012334 -
Lsi10g00719 510 CDD PMEI-like_3 28 172 - -
Lsi10g00719 510 Pfam Pectinesterase 300 504 IPR000070 GO:0030599|GO:0042545
Lsi10g00719 510 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 8 508 - -
Lsi10g00719 510 Pfam Plant invertase/pectin methylesterase inhibitor 26 172 IPR006501 GO:0004857
Lsi10g00719 510 SMART PMEI_2 21 172 IPR006501 GO:0004857
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi10g00719 Lsi-Chr10:10062257 Lsi02g02434 Lsi-Chr2:30889968 7.58E-88 dispersed
Lsi10g00718 Lsi-Chr10:10056507 Lsi10g00719 Lsi-Chr10:10062257 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00719 - - bhj:120087741 922.154