Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00720 ATGATGATTGAGACGATTAGTAATTTGAGTAAAAGCACGTCGTTCAATAAAAGTGCTTCGTTTAATAGGAGGGCTTTAAGTTCTGGAAGCCCGAGGGTGAGTCGGGTGGGCTGGATCTCCCGTTGGTATCATGTGTTTGTGGTCATTGGATTTCTGGTTTCATCTCTTGTAGTGATTACTGCTGGTTATATTCATGTACTGCCTAGTCTTCCTCTGTCTTCTCATAATAACGGTGTTTCAAAATCGAGTTATTTGAATGAAACCTCGAATGGAAGCTGCAATGTGTATAAAGGGAGCTGGATTTTGGATGATAGTTATCCACTTTACAATGCTACAGAATGCCCTTTTGCTGAGAAGGGATTTGATTGCTTGGGTAATGGTAGGGTGGATCAGAACTATCTGAAGTGGAGGTGGAAACCGATGAACTGTGAAATACCAAAACTTCAAGTGCAGAATGTGCTGGAAATGCTGCGGAGTAAAAGGGTCGTATTTGTTGGAGATTCGATGAGCAGATCACAGTGGGAATCCTTGATATGCTTACTTATGAGTGGGGTTGAGGATAAAAGGACTGTTTATGAGATGAATGGGAATAAGATCACAAAGCGGATTAAATACTTAGGTGTTCGGTTTAGTTCCTTCAACTTCACTGTTGAGTTCTATCGCTCTGTTTTCCTTGTGCAAGAAGGTCAGATGCCAAGACATTCACCTAAGAGAGTGAAGTCTGCCCTTAAACTGGATGAGCTGGATAGTATTAGCGGCCAGTGGATTGATTCAGATGTTCTAGTATTCAACACTGGACACTGGTGGGTCCCTGGGAAGTTGTTTGAAACTGGTTGCTATTTTCAGGTTGGAAATTCGCTAAAGCTTGGAATGTCAATTCCCACAGCTTTTGGAGTAGCACTTCGCACATGGGCATCTTGGATTGAGGAAAATATCAACACAAACAGAACCCATGTTTTCTTTCGTACTTTCGAGCCATCACATTGGAAGGACCACACCTTCAAATATTGCAGTGTTACCCGTCAACCTGTGACCGATGCTGGAGAAAGGGTCAGAAGCATATTTTCCGACACCATATTAGAGGTGGCAAAGAATATGAAAGCTCCCATTAACGTTTTGCACATAACGTCCATGTCTGCTTTTCGAAGCGATGCACATGTTGGCGAATGGAGCGACAACCCATCTGTCCCCGACTGCAGTCATTGGTGCCTACCTGGAGTGCCTGATGTGTGGAATGAAATTTTGCTTTCTTACCTGCTTACTGAATATGATAGTTCATTCAAATGA 1287 42.81 MMIETISNLSKSTSFNKSASFNRRALSSGSPRVSRVGWISRWYHVFVVIGFLVSSLVVITAGYIHVLPSLPLSSHNNGVSKSSYLNETSNGSCNVYKGSWILDDSYPLYNATECPFAEKGFDCLGNGRVDQNYLKWRWKPMNCEIPKLQVQNVLEMLRSKRVVFVGDSMSRSQWESLICLLMSGVEDKRTVYEMNGNKITKRIKYLGVRFSSFNFTVEFYRSVFLVQEGQMPRHSPKRVKSALKLDELDSISGQWIDSDVLVFNTGHWWVPGKLFETGCYFQVGNSLKLGMSIPTAFGVALRTWASWIEENINTNRTHVFFRTFEPSHWKDHTFKYCSVTRQPVTDAGERVRSIFSDTILEVAKNMKAPINVLHITSMSAFRSDAHVGEWSDNPSVPDCSHWCLPGVPDVWNEILLSYLLTEYDSSFK 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 10067912 10071827 + Lsi10G007200.1 Lsi10g00720 672277

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00720 428 PANTHER PROTEIN TRICHOME BIREFRINGENCE-LIKE 9-RELATED 34 421 IPR029962 GO:0016413
Lsi10g00720 428 PANTHER PROTEIN TRICHOME BEREFRINGENCE-LIKE 7 34 421 IPR029964 -
Lsi10g00720 428 Pfam GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p 145 417 IPR026057 GO:0016740
Lsi10g00720 428 Pfam PMR5 N terminal Domain 92 144 IPR025846 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00720 - - - csv:101220700 836.639
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi01g01167 Lsi10g00720 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02005 Lsi-Chr2:26012096 Lsi10g00720 Lsi-Chr10:10067912 1.89E-137 dispersed
Lsi02g02006 Lsi-Chr2:26015475 Lsi10g00720 Lsi-Chr10:10067912 5.43E-107 dispersed
Lsi09g01350 Lsi-Chr9:21444234 Lsi10g00720 Lsi-Chr10:10067912 3.51E-95 dispersed
Lsi10g00720 Lsi-Chr10:10067912 Lsi10g01583 Lsi-Chr10:20319602 5.63E-71 dispersed
Lsi11g00809 Lsi-Chr11:9885650 Lsi10g00720 Lsi-Chr10:10067912 1.85E-66 dispersed
Lsi10g00720 Lsi-Chr10:10067912 Lsi11g01691 Lsi-Chr11:25098529 8.00E-76 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1281 Blo04g00965 . . . Bpe15g00402 . . . Cmo02g00629 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda14g01054 . . Bma03g01030 . . . . . . . . Cpe05g01063 . Bhi10g01666 . . . . . . Cla02g00060 Cam02g0061 Cec02g0063 Cco02g0056 Clacu02g0060 Cmu02g0059 Cre02g0399 Lsi10g00720 . . Cme11g00064
Vvi7g1228 . . . . . . . . Cmo03g01095 Cmo07g00836 . . . . . Cpe19g00515 . . . . . . . . Cla01g01493 . . . . . . Cone6ag1267 . . . Lsi01g01167 . . . . . . . . . . . . . . Cma03g01105 Cma07g00807 . . Cpe10g00326 . . . . . . . . . . . . . . . Lsi10g00720 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010327 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi10g00720 Lsi_Chr10 FPKM 9.127172 10.59029 3.329032 3.544579 12.304479 13.395584 12.701143 1.022371 0.974778 1.172758