Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00721 ATGTCTCATAGTCATAGCACTTCCCGTTTCTCTTTCATTCTCAGAAGCTGTGCTCATCTTTATGCAATTGCCCCAGCAAAGCAAGCCCATGCTCAAATCCTCATCCATGGCTTTCTTCCACATTTAACTCTTCTAACAGATCTTCTTTTGGTGTATTGCAAATGTGGGTTTCTTCACGATGCCCGCAAGGTGTTTGACAAAATGACTCACAGAAACATGCACTCCTGGAATATCTTGATTGCTTCTTATGTTCATAGTTCTTTGTACTTTGATGCAATAAATGTGTTTAATGAGTTTAGGGACCTTGGTTTTCTGCCTGACCACTATACTTTGCCTCAGATGTTTAAGGCTAGTGTTGGTATTGGGGATGTTTATTTGGGGAAGAGACTTCATTGTTGGACAATTAGGCTGGGGTTTGAAGGATATGTTGTTGTAGACAGTACGGTTTTGGACTTTTACGCTAAGTATGGGATTGTGGGTGATGCTAAGAAGGTGTTTGATAATATGATCTTGAAAGATACAATTTCTTGGAACTCGATGATTTCTGGGTATGGGAGGGCTGGGCTTTATAGGGATGCATTGGATTGTTTCAGTCGCATGCTCTTGGAAGGAGTGAAGATGGATTTTATGACAATTCCTAGTGTTTTGAATGCTTGTGGAGGGGAAGGAGATTTGAGAAAAGGAAAAGAGATTCATTGCTTAGTTTTGAAGAGTATGGTATTTGCTGCTGATGTTGCAATTGGGAACTCATTGATTGATATGTATTCAAAGTGTGGAAGCCTGCTTGATTCTGAAAAGGTCTTTTGGAATATGAGCAGCTTGAATATTGTTACATGGACCACAATGATTTCTTGTTATGGGGCTCATGGGAAAGGAGAGAAATCCTTGGTCCTGTTTAACAAAATGAAGAATTGTGGAATCCAACCCAATTCTGTAACACTGACAGCCATTTTGGCTAGCTGCAGTCATGCAGGTTACATCAATGAAGGTTGGAGAATTTTCCAGTCTATTGTTTTAGATTATAAGGTTGAGCTGACGGTAGAACATTATGCTTGTGTTGTTGATCTTCTGAGTCGCTTTGGCTTTCTGCAGGAAGCGTTTCTGTTGATTAGAAATATGAAGCCTACCGCTGCTGCAAGCATTTGGGGTGCTCTGCTTTCTGGTTGTATGATCCACAGGAACCTTGAGATTGGGGAAATTGCAGCCAACCGGCTTTTCAAGTTGGAACCTACAAATCCAAGCAATTTTATAGCCTTGATTAGTATATATGAATCTCTTGGTATATCGCATGGTGTTTTGCTGACTAGAGAGAAGATGAAAGACCTTGTTGAAGAGCCATTAATGCCAAATCTAATTGTTCGATTATTTGAGAGTCCGAGAAATTGTTTTTGCTTGGGCAAGAGGGACTTGGATTTTCTTAATTGGAAATTTGCTTCAACCCCAAGGGCTGTTACTAGGAGACCTATAACAAATGTGCCATTTGGACTTGTTTTATTTGGAGGATTGGATTCATCACCGATTGCTGCTATTGCCTGCTGCCATTTGGTTGATTCTGGAGCAGCTCCTTGA 1569 40.54 MSHSHSTSRFSFILRSCAHLYAIAPAKQAHAQILIHGFLPHLTLLTDLLLVYCKCGFLHDARKVFDKMTHRNMHSWNILIASYVHSSLYFDAINVFNEFRDLGFLPDHYTLPQMFKASVGIGDVYLGKRLHCWTIRLGFEGYVVVDSTVLDFYAKYGIVGDAKKVFDNMILKDTISWNSMISGYGRAGLYRDALDCFSRMLLEGVKMDFMTIPSVLNACGGEGDLRKGKEIHCLVLKSMVFAADVAIGNSLIDMYSKCGSLLDSEKVFWNMSSLNIVTWTTMISCYGAHGKGEKSLVLFNKMKNCGIQPNSVTLTAILASCSHAGYINEGWRIFQSIVLDYKVELTVEHYACVVDLLSRFGFLQEAFLLIRNMKPTAAASIWGALLSGCMIHRNLEIGEIAANRLFKLEPTNPSNFIALISIYESLGISHGVLLTREKMKDLVEEPLMPNLIVRLFESPRNCFCLGKRDLDFLNWKFASTPRAVTRRPITNVPFGLVLFGGLDSSPIAAIACCHLVDSGAAP 522
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 10074054 10078203 - Lsi10G007210.1 Lsi10g00721 672278

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00721 522 PANTHER OS07G0578800 PROTEIN-RELATED 4 442 IPR045215 GO:0003723|GO:0009451
Lsi10g00721 522 Pfam PPR repeat 48 72 IPR002885 -
Lsi10g00721 522 Pfam PPR repeat 175 205 IPR002885 -
Lsi10g00721 522 Pfam PPR repeat 75 104 IPR002885 -
Lsi10g00721 522 Gene3D Tetratricopeptide repeat domain 234 446 IPR011990 GO:0005515
Lsi10g00721 522 Gene3D Tetratricopeptide repeat domain 2 126 IPR011990 GO:0005515
Lsi10g00721 522 Gene3D Tetratricopeptide repeat domain 127 233 IPR011990 GO:0005515
Lsi10g00721 522 PANTHER OS11G0213500 PROTEIN 4 442 - -
Lsi10g00721 522 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 173 207 IPR002885 -
Lsi10g00721 522 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 72 106 IPR002885 -
Lsi10g00721 522 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 275 309 IPR002885 -
Lsi10g00721 522 TIGRFAM PPR: pentatricopeptide repeat domain 277 310 IPR002885 -
Lsi10g00721 522 TIGRFAM PPR: pentatricopeptide repeat domain 74 107 IPR002885 -
Lsi10g00721 522 TIGRFAM PPR: pentatricopeptide repeat domain 175 208 IPR002885 -
Lsi10g00721 522 Pfam E motif 392 441 IPR046848 -
Lsi10g00721 522 Pfam PPR repeat family 275 321 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00721 - - - csv:101220461 801.971
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi10g00721 Lsi-Chr10:10074054 Lsi02g01175 Lsi-Chr2:14465681 4.17E-12 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1282 . . . . . . . . . Cmo20g01073 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma20g01065 . . . . Bhi10g01667 . . . Hepe08g1246 . . Cla02g00059 . . . . . . Lsi10g00721 . . Cme11g00063
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014206 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 0 1 1 1 1 0 1 1 1 23
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi10g00721 Lsi_Chr10 FPKM 6.023861 7.313177 8.731965 10.338485 7.69048 7.15598 7.672418 15.804795 14.881074 16.853085