Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00730 ATGGATGTACAATCTTCGATGGCCAATGACACAGACGATACAATCGTCTGCTATGCGCCGACAATGATTACTACAAATGGGGTGTGGCAAGGTGACAATCCTCTGGATTATTCTCTCCCCCTCTTCATCTTGCAGTTAACAATGGTGGTTGTGATGACTCGCGCTTTGGTTTTCCTCTTAAAACCCTTTCGTCAGCCTCGAGTCATCTCTGAAATTTTGGGTGGGGTGATTTTGGGGCCATCGGTACTAGGGAGGAGTGCTAAGTTTGCCAACACCGTATTTCCTTTAAGAAGTGTAATGGTCCTTGAAACAATGGCCAATGTGGGGCTTCTCTACTTTCTGTTCTTGGTTGGTGTGGAGATGGATCTCTCAGTGATTCGTCGAACTGGGAAGAAGGCAATGGCAATAGCTGTTGCAGGAATGATTCTTCCGTTCGGAATAGGAGCTGCCTTTTCATTCCAGTTGCACAAAGCGGATCAGAAATTGAACTACAACACTTACATTATGTTTCTTGGTATTGCGCTCTCCGTGACAGCTTTCCCAGTGCTAGCTAGAATTCTTGCAGAGCTTAAACTGATAAATTCAGAGCTTGGAAGGATGGCTATGGCATCTGCACTTTTTAATGATATGTGTGCTTGGGTTCTGCTAGCTTTAGCCATAGCCTTATCTGAGAATGATTCCTCATCCTTGGCTTCTTTATGGGTTGTATTGTCAAGTGCAGGCTTTGTTTTGTTTTGCATCTTCATCGTTAGACCGACGATCTCGTGGATGATTCGAAAAACTCCAGAAGGGGAAAGTGTCAGTGAGTTCTACATATGTTTGATTCTCACAGGGGTTATGATCTCAGGATTTGTTACAGATGCCATAGGAACACACTCCGTTTTTGGGGCTTTTGTGTTTGGGTTAGTTATCCCAAATGGATCACTTGGGGTGGCTTTAATTGAGAAACTTGAGGATTTTGTTTCAGGGCTTTTGCTCCCTCTTTTCTTTGCAATAAGTGGGCTTAAGACTAATGTGGCTAGCATAGAAGGATTAATCTCTTGGGTATCTATTCTATTTATCACTCTCCTTGCTTTTATTGGCAAAATCATTGGAACTCTTCTTGCCTCCATTTGTTATCAAATGTCCTATCGCGAAGGCGTCACGTTAGGCTTGCTTATGAACACCAAGGGCCTTATTGAAATGATCATCCTCAATGTTGGAAAGGACCAAAAGGTGTTAGATGATCAAACATTCACAGTTATGGTGATTGTAGCCCTCATTATGACAGGGATAATAACACCTGTAGTTACAGTAATCTATAGGCCAACAAGAAGGTTTCTACCCTATAAGAAACGAACAATCCAAGCATCAAAACCAGATTCAGAGTTCAGAGTATTAGTTTGTATACACACACCTCGAAATGTGCCAACAATCATCAACCTCCTCGATGCCTCCCATCCAACCAAAAGATCCCCAATTTGCATTTATGTGCTACACTTGGTTGAACTCACCGGTCGAGCCTCCGCCATGCTCATTGTCCACAACACCAGAAAATCAGGCCGCCCTGCTTTAAATCGAACCCAAGCTCAATCTGATCACATCATCAATGCATTCGAGAACTATGAACAACATGTCGATTGCGTCTCTGTTCAACCCCTCACAGCCATTTCACCCTACTCCACAATGCACGAAGACATCTGCAATTTAGCCGAGGATAAACGGGTTGCCTTCATAATCATCCCATTCCACAAGCAACAAACAGTCGATGGAGGAATGGAAGCCACAAATCCAGCATTTAGATTGGTCAACCAAAATGTGTTAGCCAATGCTCCTTGCTCCGTCGGAATCCTAGTCGATCGAGGCTTAAACGGCTCGAATCGAGTCGCATCAAACAAGGCAACTCACTATAACATAATCTTATTGTTCTTTGGTGGACAAGATGATAGAGAAGCCCTATCATACGCATGGAGAATGTCAGAACATCCAGGAGTGAGCTTAACCGTAATGCGATTCATCGCTGCACAAGAAAGAACAGAACCAGAACCAGAAGAGAATGCACCAAGAGTTTCAACAATGGAAACAGAAATGAACAGAGAGAGGAAACTGGACGAAGATTACATAAAAGAATTTAGGACAAAGAACCAAAATAGCGAGTCAATTACTTACACAGAGAAAGTGTTGAACAACGGCGAGGAGACAGTGGCGGCCATAAGATCAATGGACGATGCTCACGACCTGTTCATCGTTGGCAGAGGTGAATCTCACGTATCACCTCTCACTGCCGGACTCACAGACTGGAGCGAATGTCCAGAGCTAGGAGCAATCGGTGATTTGTTAGCTTCATCGGATTTTGCAGCAACGACTTCAGTTTTGGTAGTGCAACAGTTCGGAGCAGCAATGGCGGTAGACCATGGAGAAGAAGAAGGTACACCACGTAACCAAGATCCAGGCGATCCCTACCAAAGCTTGAGATCAATGAATGTGAGGCAACACACTCCATCAAGAGCTCAAATCATTTATGATACATGA 2511 43.89 MDVQSSMANDTDDTIVCYAPTMITTNGVWQGDNPLDYSLPLFILQLTMVVVMTRALVFLLKPFRQPRVISEILGGVILGPSVLGRSAKFANTVFPLRSVMVLETMANVGLLYFLFLVGVEMDLSVIRRTGKKAMAIAVAGMILPFGIGAAFSFQLHKADQKLNYNTYIMFLGIALSVTAFPVLARILAELKLINSELGRMAMASALFNDMCAWVLLALAIALSENDSSSLASLWVVLSSAGFVLFCIFIVRPTISWMIRKTPEGESVSEFYICLILTGVMISGFVTDAIGTHSVFGAFVFGLVIPNGSLGVALIEKLEDFVSGLLLPLFFAISGLKTNVASIEGLISWVSILFITLLAFIGKIIGTLLASICYQMSYREGVTLGLLMNTKGLIEMIILNVGKDQKVLDDQTFTVMVIVALIMTGIITPVVTVIYRPTRRFLPYKKRTIQASKPDSEFRVLVCIHTPRNVPTIINLLDASHPTKRSPICIYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFENYEQHVDCVSVQPLTAISPYSTMHEDICNLAEDKRVAFIIIPFHKQQTVDGGMEATNPAFRLVNQNVLANAPCSVGILVDRGLNGSNRVASNKATHYNIILLFFGGQDDREALSYAWRMSEHPGVSLTVMRFIAAQERTEPEPEENAPRVSTMETEMNRERKLDEDYIKEFRTKNQNSESITYTEKVLNNGEETVAAIRSMDDAHDLFIVGRGESHVSPLTAGLTDWSECPELGAIGDLLASSDFAATTSVLVVQQFGAAMAVDHGEEEGTPRNQDPGDPYQSLRSMNVRQHTPSRAQIIYDT 836
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 10120813 10123955 - Lsi10G007300.1 Lsi10g00730 672287

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00730 836 PANTHER BNAA09G08340D PROTEIN 12 801 - -
Lsi10g00730 836 PANTHER CATION/H + ANTIPORTER 12 801 - -
Lsi10g00730 836 Pfam Sodium/hydrogen exchanger family 49 432 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Lsi10g00730 836 MobiDBLite consensus disorder prediction 798 836 - -
Lsi10g00730 836 Gene3D - 41 439 IPR038770 -
Lsi10g00730 836 MobiDBLite consensus disorder prediction 671 690 - -
Lsi10g00730 836 Gene3D - 478 758 - -
Lsi10g00730 836 MobiDBLite consensus disorder prediction 809 836 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00730 - - - csv:101219265 1528.46
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g02066 Lsi-Chr1:28941468 Lsi10g00730 Lsi-Chr10:10120813 0 dispersed
Lsi02g01214 Lsi-Chr2:15683629 Lsi10g00730 Lsi-Chr10:10120813 0 dispersed
Lsi02g01247 Lsi-Chr2:16411319 Lsi10g00730 Lsi-Chr10:10120813 9.61E-141 dispersed
Lsi02g02561 Lsi-Chr2:32099079 Lsi10g00730 Lsi-Chr10:10120813 5.47E-116 dispersed
Lsi04g01048 Lsi-Chr4:12370495 Lsi10g00730 Lsi-Chr10:10120813 5.26E-170 dispersed
Lsi05g00042 Lsi-Chr5:898792 Lsi10g00730 Lsi-Chr10:10120813 1.27E-109 dispersed
Lsi07g00922 Lsi-Chr7:10893709 Lsi10g00730 Lsi-Chr10:10120813 2.08E-36 dispersed
Lsi07g00923 Lsi-Chr7:10948797 Lsi10g00730 Lsi-Chr10:10120813 0 dispersed
Lsi09g00810 Lsi-Chr9:9286211 Lsi10g00730 Lsi-Chr10:10120813 1.95E-149 dispersed
Lsi09g01235 Lsi-Chr9:19855207 Lsi10g00730 Lsi-Chr10:10120813 1.21E-169 dispersed
Lsi10g01469 Lsi-Chr10:18813088 Lsi10g00730 Lsi-Chr10:10120813 2.55E-134 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi10g00730 . 11 795 Antiporter Super Family AT2G13620 73.3 0.0e+00 1157.5
Lsi01g01409 . 18 722 Antiporter Super Family AT3G53720 67.2 2.4e-265 911.8
Lsi07g00919 . 83 779 Antiporter Super Family AT3G53720 50.4 1.4e-183 640.2
Lsi07g00921 . 86 771 Antiporter Super Family AT3G53720 50.4 4.4e-182 635.2
Lsi07g00919 . 1 779 Antiporter Super Family AT5G41610 70.1 5.0e-309 1057.0
Lsi07g00921 . 7 774 Antiporter Super Family AT5G41610 68.5 6.5e-301 1030.0
Lsi07g00923 . 1 783 Antiporter Super Family AT5G41610 64.3 1.0e-285 979.5
Lsi07g00922 . 4 829 Antiporter Super Family AT5G41610 60.0 1.1e-276 949.5
Lsi07g00921 . 14 772 Antiporter Super Family AT4G23700 67.9 6.0e-294 1006.9
Lsi07g00919 . 9 796 Antiporter Super Family AT4G23700 62.6 3.5e-278 954.5
Lsi07g00923 . 11 781 Antiporter Super Family AT4G23700 62.1 1.2e-275 946.0
Lsi07g00922 . 13 846 Antiporter Super Family AT4G23700 56.6 2.7e-262 901.7
Lsi07g00921 . 7 772 Antiporter Super Family AT3G17630 63.3 2.0e-270 928.7
Lsi07g00919 . 11 779 Antiporter Super Family AT3G17630 63.5 3.4e-270 927.9
Lsi07g00923 . 11 781 Antiporter Super Family AT3G17630 60.8 1.2e-259 892.9
Lsi07g00922 . 7 827 Antiporter Super Family AT3G17630 56.1 1.0e-250 863.2
Lsi01g01409 . 18 698 Antiporter Super Family AT3G17630 50.4 4.2e-167 585.5
Lsi07g00921 . 1 775 Antiporter Super Family AT1G64170 58.2 2.7e-238 822.0
Lsi07g00919 . 15 784 Antiporter Super Family AT1G64170 56.7 1.4e-231 799.7
Lsi07g00923 . 8 783 Antiporter Super Family AT1G64170 54.5 7.6e-225 777.3
Lsi07g00922 . 1 829 Antiporter Super Family AT1G64170 50.9 2.3e-221 765.8
Lsi10g00730 . 11 795 Antiporter Super Family AT2G13620 73.3 0.0e+00 1157.5
Lsi07g00921 . 1 775 Antiporter Super Family AT1G64170 58.2 2.7e-238 822.0
Lsi07g00919 . 15 784 Antiporter Super Family AT1G64170 56.7 1.4e-231 799.7
Lsi07g00923 . 8 783 Antiporter Super Family AT1G64170 54.5 7.6e-225 777.3
Lsi07g00922 . 1 829 Antiporter Super Family AT1G64170 50.9 2.3e-221 765.8
Lsi07g00921 . 14 772 Antiporter Super Family AT4G23700 67.9 6.0e-294 1006.9
Lsi07g00919 . 9 796 Antiporter Super Family AT4G23700 62.6 3.5e-278 954.5
Lsi07g00923 . 11 781 Antiporter Super Family AT4G23700 62.1 1.2e-275 946.0
Lsi07g00922 . 13 846 Antiporter Super Family AT4G23700 56.6 2.7e-262 901.7
Lsi07g00919 . 1 779 Antiporter Super Family AT5G41610 70.1 5.0e-309 1057.0
Lsi07g00921 . 7 774 Antiporter Super Family AT5G41610 68.5 6.5e-301 1030.0
Lsi07g00923 . 1 783 Antiporter Super Family AT5G41610 64.3 1.0e-285 979.5
Lsi07g00922 . 4 829 Antiporter Super Family AT5G41610 60.0 1.1e-276 949.5
Lsi07g00921 . 7 772 Antiporter Super Family AT3G17630 63.3 2.0e-270 928.7
Lsi07g00919 . 11 779 Antiporter Super Family AT3G17630 63.5 3.4e-270 927.9
Lsi07g00923 . 11 781 Antiporter Super Family AT3G17630 60.8 1.2e-259 892.9
Lsi07g00922 . 7 827 Antiporter Super Family AT3G17630 56.1 1.0e-250 863.2
Lsi01g01409 . 18 698 Antiporter Super Family AT3G17630 50.4 4.2e-167 585.5
Lsi01g01409 . 18 722 Antiporter Super Family AT3G53720 67.2 2.4e-265 911.8
Lsi07g00919 . 83 779 Antiporter Super Family AT3G53720 50.4 1.4e-183 640.2
Lsi07g00921 . 86 771 Antiporter Super Family AT3G53720 50.4 4.4e-182 635.2
Lsi02g02561 . 47 790 Antiporter Super Family AT3G52080 54.4 1.8e-234 809.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005878 2 1 2 1 2 1 2 1 0 1 1 0 2 1 1 2 0 3 2 2 1 1 1 1 1 1 1 2 1 2 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi10g00730 Lsi_Chr10 FPKM 4.163043 4.440064 0.294867 0.247373 0.85715 0.718637 0.829059 0.129886 0.0 0.0