Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00730 ATGGATGTACAATCTTCGATGGCCAATGACACAGACGATACAATCGTCTGCTATGCGCCGACAATGATTACTACAAATGGGGTGTGGCAAGGTGACAATCCTCTGGATTATTCTCTCCCCCTCTTCATCTTGCAGTTAACAATGGTGGTTGTGATGACTCGCGCTTTGGTTTTCCTCTTAAAACCCTTTCGTCAGCCTCGAGTCATCTCTGAAATTTTGGGTGGGGTGATTTTGGGGCCATCGGTACTAGGGAGGAGTGCTAAGTTTGCCAACACCGTATTTCCTTTAAGAAGTGTAATGGTCCTTGAAACAATGGCCAATGTGGGGCTTCTCTACTTTCTGTTCTTGGTTGGTGTGGAGATGGATCTCTCAGTGATTCGTCGAACTGGGAAGAAGGCAATGGCAATAGCTGTTGCAGGAATGATTCTTCCGTTCGGAATAGGAGCTGCCTTTTCATTCCAGTTGCACAAAGCGGATCAGAAATTGAACTACAACACTTACATTATGTTTCTTGGTATTGCGCTCTCCGTGACAGCTTTCCCAGTGCTAGCTAGAATTCTTGCAGAGCTTAAACTGATAAATTCAGAGCTTGGAAGGATGGCTATGGCATCTGCACTTTTTAATGATATGTGTGCTTGGGTTCTGCTAGCTTTAGCCATAGCCTTATCTGAGAATGATTCCTCATCCTTGGCTTCTTTATGGGTTGTATTGTCAAGTGCAGGCTTTGTTTTGTTTTGCATCTTCATCGTTAGACCGACGATCTCGTGGATGATTCGAAAAACTCCAGAAGGGGAAAGTGTCAGTGAGTTCTACATATGTTTGATTCTCACAGGGGTTATGATCTCAGGATTTGTTACAGATGCCATAGGAACACACTCCGTTTTTGGGGCTTTTGTGTTTGGGTTAGTTATCCCAAATGGATCACTTGGGGTGGCTTTAATTGAGAAACTTGAGGATTTTGTTTCAGGGCTTTTGCTCCCTCTTTTCTTTGCAATAAGTGGGCTTAAGACTAATGTGGCTAGCATAGAAGGATTAATCTCTTGGGTATCTATTCTATTTATCACTCTCCTTGCTTTTATTGGCAAAATCATTGGAACTCTTCTTGCCTCCATTTGTTATCAAATGTCCTATCGCGAAGGCGTCACGTTAGGCTTGCTTATGAACACCAAGGGCCTTATTGAAATGATCATCCTCAATGTTGGAAAGGACCAAAAGGTGTTAGATGATCAAACATTCACAGTTATGGTGATTGTAGCCCTCATTATGACAGGGATAATAACACCTGTAGTTACAGTAATCTATAGGCCAACAAGAAGGTTTCTACCCTATAAGAAACGAACAATCCAAGCATCAAAACCAGATTCAGAGTTCAGAGTATTAGTTTGTATACACACACCTCGAAATGTGCCAACAATCATCAACCTCCTCGATGCCTCCCATCCAACCAAAAGATCCCCAATTTGCATTTATGTGCTACACTTGGTTGAACTCACCGGTCGAGCCTCCGCCATGCTCATTGTCCACAACACCAGAAAATCAGGCCGCCCTGCTTTAAATCGAACCCAAGCTCAATCTGATCACATCATCAATGCATTCGAGAACTATGAACAACATGTCGATTGCGTCTCTGTTCAACCCCTCACAGCCATTTCACCCTACTCCACAATGCACGAAGACATCTGCAATTTAGCCGAGGATAAACGGGTTGCCTTCATAATCATCCCATTCCACAAGCAACAAACAGTCGATGGAGGAATGGAAGCCACAAATCCAGCATTTAGATTGGTCAACCAAAATGTGTTAGCCAATGCTCCTTGCTCCGTCGGAATCCTAGTCGATCGAGGCTTAAACGGCTCGAATCGAGTCGCATCAAACAAGGCAACTCACTATAACATAATCTTATTGTTCTTTGGTGGACAAGATGATAGAGAAGCCCTATCATACGCATGGAGAATGTCAGAACATCCAGGAGTGAGCTTAACCGTAATGCGATTCATCGCTGCACAAGAAAGAACAGAACCAGAACCAGAAGAGAATGCACCAAGAGTTTCAACAATGGAAACAGAAATGAACAGAGAGAGGAAACTGGACGAAGATTACATAAAAGAATTTAGGACAAAGAACCAAAATAGCGAGTCAATTACTTACACAGAGAAAGTGTTGAACAACGGCGAGGAGACAGTGGCGGCCATAAGATCAATGGACGATGCTCACGACCTGTTCATCGTTGGCAGAGGTGAATCTCACGTATCACCTCTCACTGCCGGACTCACAGACTGGAGCGAATGTCCAGAGCTAGGAGCAATCGGTGATTTGTTAGCTTCATCGGATTTTGCAGCAACGACTTCAGTTTTGGTAGTGCAACAGTTCGGAGCAGCAATGGCGGTAGACCATGGAGAAGAAGAAGGTACACCACGTAACCAAGATCCAGGCGATCCCTACCAAAGCTTGAGATCAATGAATGTGAGGCAACACACTCCATCAAGAGCTCAAATCATTTATGATACATGA 2511 43.89 MDVQSSMANDTDDTIVCYAPTMITTNGVWQGDNPLDYSLPLFILQLTMVVVMTRALVFLLKPFRQPRVISEILGGVILGPSVLGRSAKFANTVFPLRSVMVLETMANVGLLYFLFLVGVEMDLSVIRRTGKKAMAIAVAGMILPFGIGAAFSFQLHKADQKLNYNTYIMFLGIALSVTAFPVLARILAELKLINSELGRMAMASALFNDMCAWVLLALAIALSENDSSSLASLWVVLSSAGFVLFCIFIVRPTISWMIRKTPEGESVSEFYICLILTGVMISGFVTDAIGTHSVFGAFVFGLVIPNGSLGVALIEKLEDFVSGLLLPLFFAISGLKTNVASIEGLISWVSILFITLLAFIGKIIGTLLASICYQMSYREGVTLGLLMNTKGLIEMIILNVGKDQKVLDDQTFTVMVIVALIMTGIITPVVTVIYRPTRRFLPYKKRTIQASKPDSEFRVLVCIHTPRNVPTIINLLDASHPTKRSPICIYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFENYEQHVDCVSVQPLTAISPYSTMHEDICNLAEDKRVAFIIIPFHKQQTVDGGMEATNPAFRLVNQNVLANAPCSVGILVDRGLNGSNRVASNKATHYNIILLFFGGQDDREALSYAWRMSEHPGVSLTVMRFIAAQERTEPEPEENAPRVSTMETEMNRERKLDEDYIKEFRTKNQNSESITYTEKVLNNGEETVAAIRSMDDAHDLFIVGRGESHVSPLTAGLTDWSECPELGAIGDLLASSDFAATTSVLVVQQFGAAMAVDHGEEEGTPRNQDPGDPYQSLRSMNVRQHTPSRAQIIYDT 836
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 10120813 10123955 - Lsi10G007300.1 Lsi10g00730 672287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00730 836 PANTHER BNAA09G08340D PROTEIN 12 801 - -
Lsi10g00730 836 PANTHER CATION/H + ANTIPORTER 12 801 - -
Lsi10g00730 836 Pfam Sodium/hydrogen exchanger family 49 432 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Lsi10g00730 836 MobiDBLite consensus disorder prediction 798 836 - -
Lsi10g00730 836 Gene3D - 41 439 IPR038770 -
Lsi10g00730 836 MobiDBLite consensus disorder prediction 671 690 - -
Lsi10g00730 836 Gene3D - 478 758 - -
Lsi10g00730 836 MobiDBLite consensus disorder prediction 809 836 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g02066 Lsi-Chr1:28941468 Lsi10g00730 Lsi-Chr10:10120813 0 dispersed
Lsi02g01214 Lsi-Chr2:15683629 Lsi10g00730 Lsi-Chr10:10120813 0 dispersed
Lsi02g01247 Lsi-Chr2:16411319 Lsi10g00730 Lsi-Chr10:10120813 9.61E-141 dispersed
Lsi02g02561 Lsi-Chr2:32099079 Lsi10g00730 Lsi-Chr10:10120813 5.47E-116 dispersed
Lsi04g01048 Lsi-Chr4:12370495 Lsi10g00730 Lsi-Chr10:10120813 5.26E-170 dispersed
Lsi05g00042 Lsi-Chr5:898792 Lsi10g00730 Lsi-Chr10:10120813 1.27E-109 dispersed
Lsi07g00922 Lsi-Chr7:10893709 Lsi10g00730 Lsi-Chr10:10120813 2.08E-36 dispersed
Lsi07g00923 Lsi-Chr7:10948797 Lsi10g00730 Lsi-Chr10:10120813 0 dispersed
Lsi09g00810 Lsi-Chr9:9286211 Lsi10g00730 Lsi-Chr10:10120813 1.95E-149 dispersed
Lsi09g01235 Lsi-Chr9:19855207 Lsi10g00730 Lsi-Chr10:10120813 1.21E-169 dispersed
Lsi10g01469 Lsi-Chr10:18813088 Lsi10g00730 Lsi-Chr10:10120813 2.55E-134 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00730 - - csv:101219265 1528.46