Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00742 ATGAAAATAAGGCTGAAGTTTTGCCACCAAAACCAACCAACATCCATGGGTTCTGCAACTGCAAGAGTACTGATTCCCCATCTTCTCTTTCCCTCTTCTTCTTCATCTCACAATCCTTCAACAAACCCTAACCCCAAATCTTCAAAACCCCTCTCATTTCCCAACCATAATCCATTACCCACCAGGCGTTTGTTGCTCTTCTCCCTTCCCATAGCCACTGCCTTTCTTCTCCCAATTCCGAGCAATCCGATTCAACCCAGTTCTTGCCGTGCTGTGGAGAGCTTTGACCCTGTCAGCCGTTCTGAGAAAGAAGCGAGTGCCGCCATTTCCCGAAGAGTTTCTGAAGCTGTGGAGCTTCTCGATAAAGGCAGGGAGTTGCAAGCTCTTGGTGATTTCAATCAAGCTCTTCTCTACTTCACTCAGGTAATTGATAAATATAAAGATTTTGCTTTCTCGGACTATGCCCGAGTAGGCAGAGCATTGGCCCTGTACGAAATTGGTGACCGAGAAGAAGCAATTGCAGAGATGGAGGATGTTTCCATATCATTGAAGGGATATCCAGAAGTGCATGCGGCATTGGCTGCAGCTTTATACGTGGATAAGCATGCTGCATTGCTGGCTGAAAATCAATTCACCATTGCAACTTTGCTTGATCCTCATTATGTGGATATCTCATATGTGAAAGAAACAAAGCACTGGCCTCCTAGTTTGATTAGTTCTTTGCAACACTTCTTAACACTTTCTTAG 747 44.85 MKIRLKFCHQNQPTSMGSATARVLIPHLLFPSSSSSHNPSTNPNPKSSKPLSFPNHNPLPTRRLLLFSLPIATAFLLPIPSNPIQPSSCRAVESFDPVSRSEKEASAAISRRVSEAVELLDKGRELQALGDFNQALLYFTQVIDKYKDFAFSDYARVGRALALYEIGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHAALLAENQFTIATLLDPHYVDISYVKETKHWPPSLISSLQHFLTLS 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 10255202 10259087 + Lsi10G007420.1 Lsi10g00742 672299

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00742 248 Gene3D Tetratricopeptide repeat domain 97 232 IPR011990 GO:0005515
Lsi10g00742 248 SUPERFAMILY TPR-like 108 226 IPR011990 GO:0005515
Lsi10g00742 248 Pfam Tetratricopeptide repeat 128 195 - -
Lsi10g00742 248 MobiDBLite consensus disorder prediction 32 54 - -
Lsi10g00742 248 PANTHER EXPRESSED PROTEIN 16 248 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00742 - - - csv:101214268 431.795
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1311 . Blo16g00546 . . . Bpe13g00043 Bma09g00221 . . Cmo20g01066 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g01387 . . . . . . . . . Cma20g01058 . . . Cpe16g00087 Bhi10g01688 . . . . . . Cla02g00047 Cam02g0049 Cec02g0049 Cco02g0042 Clacu02g0048 Cmu02g0048 Cre02g0387 Lsi10g00742 . . Cme11g00048
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008220 1 4 1 2 1 1 2 1 1 1 2 1 1 1 1 1 1 1 2 1 1 1 1 0 1 1 1 0 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi10g00742 Lsi_Chr10 FPKM 0.675539 0.951024 0.771776 1.029207 0.0 0.0 0.0 0.0 0.0 0.039935