Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00744 ATTAGTGGAAATAGCTTCAATTTCTTGCCTCCTGGTCTCAGATTCTGCCCAACAGATGAAGACCTTGTTCTTCATTTTCTCTATCATAAGGCTTCTCTCTCTTCTACACACAATTTTTCCAATTCCATCATTCCTCAGCTTCAACTTCATCTCTATAACCCTTGGCAATTCCATGGGAAAGCACTTTCAAATGGGGGTATTCACTACTTTTTCAGCAAAGTGGGAGAAAGTAGAGCAACAAAGAGTGGATATTGGAAAGATGTTTTAATGGATGAACCAATCTTGTGTAGTGCCAATGGGAATGAAGTGGGCATAAAAAAGTATCATATTTTCTTTGTTGGTGAAGAAGATCACTCACCAATACCCATTCAAACAAGTTGGGTCATGCAAGAGTATCACATTTATAGCTACCTTTTGAACACCCATATTCCTCAATCTCAAAACAACAACAACAATCTATCACAAACTAAATCAGAGTTTGGATTATGGGTTCTGTGTCGAGTTTTTGAAGCAAAAGACAATAATGGAATTAGAAGTATGTTTAGTACTTATGAGGAAGATGATGATAATGAAAGTGAACTTTCATATTTGGATGAGATGTATTTGACATTAGATGATATT 621 35.91 ISGNSFNFLPPGLRFCPTDEDLVLHFLYHKASLSSTHNFSNSIIPQLQLHLYNPWQFHGKALSNGGIHYFFSKVGESRATKSGYWKDVLMDEPILCSANGNEVGIKKYHIFFVGEEDHSPIPIQTSWVMQEYHIYSYLLNTHIPQSQNNNNNLSQTKSEFGLWVLCRVFEAKDNNGIRSMFSTYEEDDDNESELSYLDEMYLTLDDI 207
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 10272552 10275972 - Lsi10G007440.1 Lsi10g00744 672301

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00744 207 ProSiteProfiles NAC domain profile. 9 171 IPR003441 GO:0003677|GO:0006355
Lsi10g00744 207 Pfam No apical meristem (NAM) protein 10 134 IPR003441 GO:0003677|GO:0006355
Lsi10g00744 207 Gene3D NAC domain 18 176 IPR036093 GO:0003677|GO:0006355
Lsi10g00744 207 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 7 206 - -
Lsi10g00744 207 PANTHER NAC TRANSCRIPTION FACTOR 56 7 206 - -
Lsi10g00744 207 SUPERFAMILY NAC domain 7 169 IPR036093 GO:0003677|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00744 - - - csv:101214025 343.199
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00805 Lsi-Chr3:12002512 Lsi10g00744 Lsi-Chr10:10272552 1.43E-34 dispersed
Lsi10g00744 Lsi-Chr10:10272552 Lsi02g00719 Lsi-Chr2:6483484 7.18E-26 dispersed
Lsi10g00744 Lsi-Chr10:10272552 Lsi04g01300 Lsi-Chr4:20550978 5.91E-29 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1317 . . . . . . . . Cmo02g00643 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g01390 . . . . Bma06g00491 Sed05g3849 . . . . . . . . Bhi10g01692 Tan07g0845 Cmetu11g1623 . Hepe08g1230 . . Cla02g00044 Cam02g0047 . Cco02g0040 Clacu02g0046 Cmu02g0046 Cre02g0385 Lsi10g00744 . . Cme11g00046
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014205 0 1 0 0 0 1 1 1 0 0 1 1 1 1 1 1 1 0 1 1 1 2 1 0 1 1 1 2 1 0 23
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26042 PF02365 NAM 5.80E-20 No_clan Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi10g00744 Lsi_Chr10 FPKM 21.745705 22.993187 45.167858 45.456284 46.977951 49.720463 50.638256 68.140572 72.220573 66.31002