Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00753 ATGACTGAAAATGTTCCGTCGCAGGCGGCAGCTTCTCCCTTGAAGCTTTACTCGTACTGGAGGAGCTCTTGTTCTTACCGTGTTCGAATTGCCCTTAACTTGAAAGGGCTTAATTTCGAGTACAAAGCTGTTGACCTACTGAAGGGAGAGCAATTCAGTCCCGAGTATGAGAAGCTCAATCCTATTGGTTATGTACCCACTCTTGTGGATGGGGATTATTTGGAGGAGAAGTACCCTCAGCATCCTCTGTTGCCTCGTGATCTTAGTAAAAGAGCTATTAATTACCAGGCTGCAAACATTGTTTCTTCTAGCATACAGCCTCTTCAAAATCTAGCTGTTCTGAAGTACATTGAGGAAAAATCTGGTCCAGCAGAGAAACTTCGTTGGGTTCAACATCACATTGAAAAAGGTTTTACAGCACTTGAAAAGCTGCTAAAAGCTCACGCTGGGAAATATGCTACTGGAGAGGAAATCTATCTGGCGGACTTGTTTTTGGCTCCTCAAATTCATGGCGCCATCAATAGATTCAGTGTTGACATGTCCAAATTTCCTCTTTTATGGAGGTTGAATGAGGAATACAATACTATAGCAGCATTTCAAGATGCAGCGCCAGCAAACCAGCCTGATGCTACTCAAAGCTCTAGTTAA 648 43.21 MTENVPSQAAASPLKLYSYWRSSCSYRVRIALNLKGLNFEYKAVDLLKGEQFSPEYEKLNPIGYVPTLVDGDYLEEKYPQHPLLPRDLSKRAINYQAANIVSSSIQPLQNLAVLKYIEEKSGPAEKLRWVQHHIEKGFTALEKLLKAHAGKYATGEEIYLADLFLAPQIHGAINRFSVDMSKFPLLWRLNEEYNTIAAFQDAAPANQPDATQSSS 215
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 10352564 10356605 - Lsi10G007530.1 Lsi10g00753 672310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00753 215 PANTHER MALEYLACETOACETATE ISOMERASE 7 211 - -
Lsi10g00753 215 Gene3D Glutaredoxin 12 85 - -
Lsi10g00753 215 TIGRFAM maiA: maleylacetoacetate isomerase 15 210 IPR005955 GO:0003824|GO:0005737|GO:0009072
Lsi10g00753 215 SFLD Main (cytGST) 14 189 - -
Lsi10g00753 215 SUPERFAMILY GST C-terminal domain-like 82 210 IPR036282 -
Lsi10g00753 215 PANTHER GLUTATHIONE S-TRANSFERASE 2-LIKE ISOFORM X1 7 211 - -
Lsi10g00753 215 CDD GST_N_Zeta 14 72 IPR034333 -
Lsi10g00753 215 SFLD Glutathione Transferase (cytosolic) 14 189 IPR040079 -
Lsi10g00753 215 Gene3D - 86 213 - -
Lsi10g00753 215 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 87 212 IPR010987 -
Lsi10g00753 215 Pfam Glutathione S-transferase, C-terminal domain 116 192 IPR004046 -
Lsi10g00753 215 SUPERFAMILY Thioredoxin-like 11 86 IPR036249 -
Lsi10g00753 215 Pfam Glutathione S-transferase, N-terminal domain 13 72 IPR004045 -
Lsi10g00753 215 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 12 125 IPR004045 -
Lsi10g00753 215 CDD GST_C_Zeta 90 207 IPR034330 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01960 Lsi-Chr5:26731176 Lsi10g00753 Lsi-Chr10:10352564 1.15E-48 dispersed
Lsi09g00644 Lsi-Chr9:7196823 Lsi10g00753 Lsi-Chr10:10352564 5.53E-74 dispersed
Lsi10g00753 Lsi-Chr10:10352564 Lsi05g01792 Lsi-Chr5:25252352 2.16E-09 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00753 K01800 - csv:101213302 361.688