Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00758 ATGCTGCTCAGTCGGGAATTGCTCACTTGGGCGCTTGTTAAAGTTGCTCAGCCTGGGGATTGCGTCATTGCTCTTCATGTCCTTGATTCTGCAGCTGGTAATTGTTTCTCCACCTCGTTTCTCTCGCTTGATTCTGTGGTTTTCGTTTGCCTTGTGCTGATTTCTGAGGGGAAATCGACTTTGCTTTCTCTTGTTAAATCGTTTGACTCTGTGTTGTCCGCTTATGAAGGATTCTGCAACCTGAAGCAGGTTGATTTGAAGCTCAAGGTCTGCCGAGGCTCGCCGGTTCGGAAAATCATTAGACGGGAAGTGGATTCTTACGGCGAGGCTTCACTAATTCTCGGTACTTCTAAAACTCACCATAGAATCCGTTCCTCGGCCTCGGTTGCTAAGTACTGCGCTAGAAAATTGTCGAGCAGATTCAGTGTTTTAGCTGTTAATAATGGCAAAGTTATTTTCCAGAGATTAGCGACTTCCCCAAATAAAGGCCAGTCTCGAGACAAGGATGGGGACAGGAATAGTGCTGCCATTGTAGAAGTAACTAATGAAACAAAAGCTATTGGGTTGGCTACAAACTTTATCGATAGCCATCGTTGTTTACAGAAATCTGACTCTGGTTGTAATGATAAAACGGAGAGGGACTGTGTTGAGGGTGCTCCATCTTCGCTTGAACGGAACGATTCGGGAATTGATTTGGTGGATGAGTTACCTGAGGATAATGATGTGGGGAATTCATTGGCTTTGGTACCATTTCATAAGCCTCAGGGAATTCTGAAGTCAAATTCCATTGTGAGCCGAGAATCGTCGCATTGGAAATCGAGTTGGCCGCTTCTGAGACGGATATTTTTGTCCAAGCACCAGGCAGAGAAATCTTCAAAGAAGTTTTCTATGTTCCAAGGTGTATTGCACATACCAAACTTCCAGTCGTCCTCGGCTTTGGTTTATCCAGATCAGAAACAGAACAGTTCTGATCAGGATCAGGGTTCCACCATTGATGGAGAGTGTGGTGCAATTGTGCCATATGGGTCTAGCCACATTTTGGAAAGCCTTCCTAAAGAGGTATTGGATTTGAAGGATAAATACTCATCCACCTGCAGATTGTTTACTTATGAGGAACTTTTATCGGCAACATCTAATTTTATGCCTGAGAATCTGGTTGGTAAAGGAGGTAGTAGCTATGTTTACCGAGGGCTTCTCCCTGATGGCAAGGAAATTGCTGTCAAAATTTTGAAGCCATCCGAGAATGTGCTAAAGGAATTTGTTCAGGAAGTTGGGATCATTGCGACTTCAACTCATAAGAATATTATATCTTTAATAGGTTTTTGTTTGGAGGACAATAATTTACTGTTGGTCTATGATTTTCTTTCAAGAGGAAGTATGGAAGAAAATCTTCATGGTAAAGATCTATACTATACTATTTTGAAGAAGACTGGTTGTAAGAAGGATGTGGATTCATTTGGTTGGCAAGAGAGGTTTAAGGTTGCAGTTGGTGTTGCTGAGGCACTAGACTATCTACACAATTGCAGGGAGGAACCTGTGATACACCGTGATGTGAAGTCCTCTAACATTCTGCTTTCAGAGAATTTTGAACCACAGCTTTCTGATTTTGGGCTTGCTAGTTGGGCATCATCGTGCTTTCAAATTACCTGTACTGACGTAGCTGGAACGTTTGGTTACTTGGCTCCTGAGTATTTCATGCACGGCAAAGTGAGTGACAAAATCGACGTCTACGCCTTTGGTGTGGTACTCCTTGAACTACTTTCAGGTAGAAAACCAATCAGCAATAATTGTCCGAAGGGACAGGAGAGCCTTGTCATGTGGGCAAAGCCAATTTTGACGGAAGGCAAAGTTTCACAACTACTAGATCCAAGCCTAGGCAGTGACTACAACCACGATCAAATAGGTCGAATGATTTTGGCTGCTACTCTTTGTATTAGACGAGCACCGAGACTCCGCCCTCAAATCAGCCTGGTAAGTTTACTACTAAATGCACAACCCCTTCGGCATCTTCCACTCTTCAATGCTTGTCAGTGTCATCAAAATGTATTGAAACTTCTCCAAGGCGACGAGGAAATTACAACATGGGCAAGACAACAAATCGATGAATCGGACGAATTGGATGCGAGTGATGGAGAACCTCTACCTACTAACATCCAATCACACCTTAACCTGGCGTTGCTTGGCTTGGAGGATGACTCACTTTCTGTTGGCAGTGGAATACAAAGCATCTCCATAGAGGACTACTTGCAGGGCAGATGCAGCCGCTCTTCAAGCTTTAACTAG 2283 43.63 MLLSRELLTWALVKVAQPGDCVIALHVLDSAAGNCFSTSFLSLDSVVFVCLVLISEGKSTLLSLVKSFDSVLSAYEGFCNLKQVDLKLKVCRGSPVRKIIRREVDSYGEASLILGTSKTHHRIRSSASVAKYCARKLSSRFSVLAVNNGKVIFQRLATSPNKGQSRDKDGDRNSAAIVEVTNETKAIGLATNFIDSHRCLQKSDSGCNDKTERDCVEGAPSSLERNDSGIDLVDELPEDNDVGNSLALVPFHKPQGILKSNSIVSRESSHWKSSWPLLRRIFLSKHQAEKSSKKFSMFQGVLHIPNFQSSSALVYPDQKQNSSDQDQGSTIDGECGAIVPYGSSHILESLPKEVLDLKDKYSSTCRLFTYEELLSATSNFMPENLVGKGGSSYVYRGLLPDGKEIAVKILKPSENVLKEFVQEVGIIATSTHKNIISLIGFCLEDNNLLLVYDFLSRGSMEENLHGKDLYYTILKKTGCKKDVDSFGWQERFKVAVGVAEALDYLHNCREEPVIHRDVKSSNILLSENFEPQLSDFGLASWASSCFQITCTDVAGTFGYLAPEYFMHGKVSDKIDVYAFGVVLLELLSGRKPISNNCPKGQESLVMWAKPILTEGKVSQLLDPSLGSDYNHDQIGRMILAATLCIRRAPRLRPQISLVSLLLNAQPLRHLPLFNACQCHQNVLKLLQGDEEITTWARQQIDESDELDASDGEPLPTNIQSHLNLALLGLEDDSLSVGSGIQSISIEDYLQGRCSRSSSFN 760
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 10394485 10397591 - Lsi10G007580.1 Lsi10g00758 672315

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00758 760 PANTHER OS01G0253100 PROTEIN 4 663 IPR045271 GO:0004714|GO:0006468
Lsi10g00758 760 PANTHER OS01G0253100 PROTEIN 681 754 IPR045271 GO:0004714|GO:0006468
Lsi10g00758 760 Pfam Protein kinase domain 383 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi10g00758 760 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASE-LIKE DOMAIN KINASE 4 663 - -
Lsi10g00758 760 Gene3D Phosphorylase Kinase; domain 1 345 454 - -
Lsi10g00758 760 SMART serkin_6 380 682 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi10g00758 760 ProSitePatterns Serine/Threonine protein kinases active-site signature. 513 525 IPR008271 GO:0004672|GO:0006468
Lsi10g00758 760 SUPERFAMILY Protein kinase-like (PK-like) 362 658 IPR011009 -
Lsi10g00758 760 Gene3D Transferase(Phosphotransferase) domain 1 458 668 - -
Lsi10g00758 760 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASE-LIKE DOMAIN KINASE 681 754 - -
Lsi10g00758 760 ProSiteProfiles Protein kinase domain profile. 380 673 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi10g00758 760 ProSitePatterns Protein kinases ATP-binding region signature. 386 408 IPR017441 GO:0005524
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00758 - - - csv:101216673 1290.79
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00467 Lsi-Chr8:12398614 Lsi10g00758 Lsi-Chr10:10394485 0 dispersed
Lsi09g00931 Lsi-Chr9:11577367 Lsi10g00758 Lsi-Chr10:10394485 2.88E-73 dispersed
Lsi10g00495 Lsi-Chr10:7112351 Lsi10g00758 Lsi-Chr10:10394485 1.17E-124 dispersed
Lsi10g00758 Lsi-Chr10:10394485 Lsi11g00748 Lsi-Chr11:8321372 6.29E-80 dispersed
Lsi10g00758 Lsi-Chr10:10394485 Lsi11g00260 Lsi-Chr11:2621815 8.31E-76 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g160 . Blo15g00380 Bda06g00477 Bda08g00992 Bpe07g00715 . Bma05g00367 Bma12g00919 . . Cma02g00258 Cma20g00752 . Car20g00653 . . . . . . . . . . . . . . . . . . . . . Lsi10g00758 . Chy11g00254 . . . . . . Bpe05g00289 . . . Cmo02g00255 Cmo20g00747 . . . . Cpe16g00317 Cpe05g01372 Bhi10g01849 . . . . . . Cla02g01167 . . . . . . . Csa02g01393 . Cme11g00380
Vvi4g1322 . Blo16g00554 . . . Bpe13g00054 . Bma15g00776 Cmo02g00650 Cmo20g01056 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo06g00187 . . Bpe10g00266 Bpe06g00305 . Bma06g00472 . . . . Cma20g01050 . . Cpe05g01044 Cpe16g00096 Bhi10g01716 . . . . . . Cla02g00030 . . . . . . Lsi10g00758 . . Cme11g00032
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005017 2 1 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 0 1 1 1 0 0 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83951 PF00069 Pkinase 5.60E-40 CL0016 Lsi PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi10g00758 Lsi_Chr10 FPKM 6.959876 7.652287 7.378964 7.603833 6.774195 6.58321 7.46808 11.881599 11.299283 11.526744