Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00762 ATGGGGCTTATGTTTGAGAACTCATGTGAAATTGGGGTTTTCTCCAAGCTCACCAATGCTTATTGCTTGGTTGCAATTGGTGGCTCTGAGAATTTCTACAGTACCTTTGAAACTGAATTAGGTGGTGTTATTCCGGTTGTTAAAACATCTATTGATGGCACTCGCATTATTGGCCGTCTATGTGCTGAACTTCAGCACTTGAGAAACAGCCTACCTGACCAAGTTGTTGTTCAACGTATACAAGAGAGATTGTCTGCTCTGGGGAATACAATTGCCTGTAATGATCATGTTGCTCTCGCACATACTGATCTTGATCGGGAAACTGAAGAGCTCATTGCTGATGTTCTTGGAGTGGAGGTCTTTAGGCAGACAGTAGCAGGCAACGTCCTCGTGGGAAGCTACTGTAACTTCACGAATAGGGGTGGCTTGGTTCATCCACATACGTCTGTTGAAGATTTGGACGAGCTATCAACCCTTCTTCAGGTTCCTTTAGTTGCTGGAACCGTAAATCGTGGAAGTGAAGTGATTGCTGCTGGATTGACAGCAAATGACTGGACTGCATTTTGTGGTTCAGACACCACTGCCACCGAGTTATCGGTCATTGAGAGCGTTTTCAAATTGAGGGAGGCTCAACCAAGTTCCATTGTTGAAGAAATGAGGAAGTCACTAATAGACAGTTACGTGTGA 687 44.54 MGLMFENSCEIGVFSKLTNAYCLVAIGGSENFYSTFETELGGVIPVVKTSIDGTRIIGRLCAELQHLRNSLPDQVVVQRIQERLSALGNTIACNDHVALAHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCNFTNRGGLVHPHTSVEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTANDWTAFCGSDTTATELSVIESVFKLREAQPSSIVEEMRKSLIDSYV 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 10452561 10458562 - Lsi10G007620.1 Lsi10g00762 672319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00762 228 Pfam eIF-6 family 4 186 IPR002769 GO:0042256|GO:0043022
Lsi10g00762 228 TIGRFAM eIF-6: putative translation initiation factor eIF-6 4 207 IPR002769 GO:0042256|GO:0043022
Lsi10g00762 228 Gene3D - 1 208 - -
Lsi10g00762 228 Hamap Translation initiation factor 6 [eif6]. 1 228 IPR002769 GO:0042256|GO:0043022
Lsi10g00762 228 CDD IF6 5 206 IPR002769 GO:0042256|GO:0043022
Lsi10g00762 228 PIRSF Transl_init_IF-6 1 209 IPR002769 GO:0042256|GO:0043022
Lsi10g00762 228 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 6 3 228 - -
Lsi10g00762 228 SMART eIF6neu2 1 187 IPR002769 GO:0042256|GO:0043022
Lsi10g00762 228 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 6 3 228 IPR002769 GO:0042256|GO:0043022
Lsi10g00762 228 SUPERFAMILY Pentein 4 207 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01056 Lsi-Chr6:20791878 Lsi10g00762 Lsi-Chr10:10452561 2.48E-166 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00762 K03264 - csv:101207707 414.846