Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00780 ATGAGAAGGAAAAATCTAAGATTTGTTGTCATCCAAACAGGGAATATGGATAGTGCATTGATGTCCAGTGGAGGAGTGGAAGCTTCTTTGACTCTTTTAAAATCAATGATGTTAAAAGCAGAGGCTCAAAGGTGCGATGGGAACACAGATTCTAATGCTCATTCTCATTCGGATTCCACCATCAACTGGCAGCAGAAGGAAGCAGATTTTTCACAATCCCACCTTGCATTTTCATTCTCAATGCTTTGTGGGGCCCTTGCACTTGCACTTGCACTACAGATTTTTCCTCTTATCATTCAGTTCCCCATGATTGGATTAGTTTATTTAAACATTGTCTCCTGCTTCTGTTTCTCTAGCATGATCCATTCTTCTTTGTTTGTAGCATTTGCAGCCTCAGAAGCCATGCCTCTTTCTAAAGGAGATACTCCCATGTTTTCAATTTTCTATAGATGGAACTCCTTAAGCCTGATCATTCAGGGGCTGCTACTGTTCTCATTGTTGAGGTCGAATTATGCATCGACGGATCCTGATGTGGAAGGAGAAGCTTTGGTTGATTTGTTAGGGGCACTGAATGATTCCAATCATCAGATAACTGATTGGAATTATCATCTTGTAAGCCCTTGCTTTAGTTGGTCGCATATTACCTGCCGAAATGGAAATGTCATATCCTTGAGCTTGGGTTCAGTAGGATTTTCAGGATCGCTTTCTCCCTCAATTACCAAACTGAAGTATTTGGCTAGCCTGGATTTGCAGAACAATAACATAGCTGGTGTTATACCAGATTATCTAGCTAACATGACCCACCTACAGAATTTGAATCTTGCTAATAATAACTTCAATGGCCCTATACCTGCGGCTTGGGGTCGACTTGTCGGAACTGGTTTAAATTGTGGGTTTAGGTTGGATAAACCTTGTGTTTCGACATCTCCCCATCGAGCTTCTGCAAAGAATTCAAAGTTTGGGGTAGTGGCAAGTACTGCAAGTTGTGGGGGTTTCATACTTCTGTCAATTGGTGCCTTCTTTGCTTATAGATGCTTCTACGTGCGCAAGCTTAAGGATCCTATGTTTGTTGATGTTGCCGGTGAAGATGAATGTAAATTTTGCTTTGGACAAATCAGAAGATTTTCATTGCGGGAAATCCAACTTGCTACTGATAACTTTAACGAAGCGAACATCATTGGCCAAGGAGGCTTTGGAAAAGTATATAAAGGCATCCTCTCAGATGCCTCCAAGGTGGCTGTGAAACGGTTGACAGACTACAATAGTCCTGGTGGGGAGGCTGCATTCCTAAGAGAAGTTCAACTAATAAGCGTTGCAGTGCATAGAAATCTCCTCCGGTTGATTGGGTTCTGCACAACCACATCTGAGAGAATCCTTGTTTATCCATTCATGCAGAATCTTAGCGTGGCACATCGCTTGAGAGATTTAAAACCTGGAGAAAGAAGCTTGGATTGGGCCACGAGGAAACGAATTGCTTTCGGTGCAGCTCATGGTTTGGAGTATTTGCATGAGCACTGTAATCCTAAGATCATTCATCGCGATCTGAAGGCTGCAAATATCTTGTTAGACGATGACTTTGAAGCTGTTCTTGGAGATTTCGGGCTGGCTAAGCTAGTTGATACTAAAGTAACTCATATTACCACTCAAGTGCGTGGTACGATGGGTCACATTGCCCCAGAATACCTATCCACTGGAAAGTCGTCCGAAAAGACAGATGTTTTTGGATATGGTATCACCCTTCTTGAACTTGTCACTGGCCAACGAGCAATAGATTTCTCCCGCCTCGAAGAGGAGGAAGATGTTCTTCTACTTGATCATATAAAGAAGTTGCAGAGGGAGAATAGGCTTGAAGATGTGGTGGACAAAAACTTAAAGAGCTACAATGAGAAAGAAGTCGAAAACATAGTTCAAGTGGCACTGCTTTGTACTCAAAGTTCACCAGAGGACCGGCCGACAATGGCCGAAGTTGTGAATCTACTACATGGAGAAGGGCTGGCAGATAGGTGGGCAGAGTGGATGCAACTTGAAGAGAGTCAAGTCATGATCAAGAAGCCATACAGTTGTCTAAAGCCAGATAGAAAGAGAAAGAAACCATTGACATTCTCCAATTTTGAAGCTAAGCTCTTAGGAAAAGTCATAATTTACTCTGAATCTCTGTATATAAGGGTGCATAGGATTCATTCTTCTCCTCCATTGATTCTGTGGCTACTGCAGATTGCAGAATTCAATTTGATGTTATGGGGAGAAGTGTTTCAAGGTCTCCGTCGTACACTCACCGTCCCAGTTCCCATCGCCATAGTCGGAGAAGCAGAAGGGATCGAACTCCTTCTCCCTATTACTCCAATTCCCATTCCAGGAGAAGGAGTCGTTCAACTTCCCTCCGCCGCCGCAGAAGTCCTTCCCCCTCCTACCGTCGTCGTAGAAGTCGCTCTCCCACCCCACGGAGACGCCGCCGACGCAGAAGTAGGTCTTTCTCCTCATCCCCTTCCCCCAAATCGCCTAGTTCCAGTCCTAGCCCTGCATCCATTGATCGCAAAAATTCCATAG 2547 43.93 MRRKNLRFVVIQTGNMDSALMSSGGVEASLTLLKSMMLKAEAQRCDGNTDSNAHSHSDSTINWQQKEADFSQSHLAFSFSMLCGALALALALQIFPLIIQFPMIGLVYLNIVSCFCFSSMIHSSLFVAFAASEAMPLSKGDTPMFSIFYRWNSLSLIIQGLLLFSLLRSNYASTDPDVEGEALVDLLGALNDSNHQITDWNYHLVSPCFSWSHITCRNGNVISLSLGSVGFSGSLSPSITKLKYLASLDLQNNNIAGVIPDYLANMTHLQNLNLANNNFNGPIPAAWGRLVGTGLNCGFRLDKPCVSTSPHRASAKNSKFGVVASTASCGGFILLSIGAFFAYRCFYVRKLKDPMFVDVAGEDECKFCFGQIRRFSLREIQLATDNFNEANIIGQGGFGKVYKGILSDASKVAVKRLTDYNSPGGEAAFLREVQLISVAVHRNLLRLIGFCTTTSERILVYPFMQNLSVAHRLRDLKPGERSLDWATRKRIAFGAAHGLEYLHEHCNPKIIHRDLKAANILLDDDFEAVLGDFGLAKLVDTKVTHITTQVRGTMGHIAPEYLSTGKSSEKTDVFGYGITLLELVTGQRAIDFSRLEEEEDVLLLDHIKKLQRENRLEDVVDKNLKSYNEKEVENIVQVALLCTQSSPEDRPTMAEVVNLLHGEGLADRWAEWMQLEESQVMIKKPYSCLKPDRKRKKPLTFSNFEAKLLGKVIIYSESLYIRVHRIHSSPPLILWLLQIAEFNLMLWGEVFQGLRRTLTVPVPIAIVGEAEGIELLLPITPIPIPGEGVVQLPSAAAEVLPPPTVVVEVALPPHGDAADAEVGLSPHPLPPNRLVPVLALHPLIAKIP 848
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 10650857 10659796 + Lsi10G007800.1 Lsi10g00780 672337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00780 848 ProSitePatterns Protein kinases ATP-binding region signature. 393 415 IPR017441 GO:0005524
Lsi10g00780 848 Gene3D Transferase(Phosphotransferase) domain 1 464 680 - -
Lsi10g00780 848 Gene3D Ribonuclease Inhibitor 178 294 IPR032675 -
Lsi10g00780 848 Gene3D Phosphorylase Kinase; domain 1 356 463 - -
Lsi10g00780 848 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 292 680 - -
Lsi10g00780 848 PANTHER LRR RECEPTOR-LIKE KINASE 292 680 - -
Lsi10g00780 848 PANTHER LRR RECEPTOR-LIKE KINASE 160 290 - -
Lsi10g00780 848 Pfam Protein kinase domain 388 658 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi10g00780 848 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 160 290 - -
Lsi10g00780 848 ProSiteProfiles Protein kinase domain profile. 387 673 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi10g00780 848 Pfam Leucine rich repeat N-terminal domain 178 216 IPR013210 -
Lsi10g00780 848 ProSitePatterns Serine/Threonine protein kinases active-site signature. 510 522 IPR008271 GO:0004672|GO:0006468
Lsi10g00780 848 SUPERFAMILY Protein kinase-like (PK-like) 368 660 IPR011009 -
Lsi10g00780 848 SUPERFAMILY L domain-like 179 290 - -
Lsi10g00780 848 SMART serkin_6 387 660 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi10g00780 Lsi-Chr10:10650857 Lsi07g00190 Lsi-Chr7:2064152 1.64E-154 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83953 PF00069 Pkinase 6.50E-45 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00780 - - bhj:120088289 1108.2