Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00794 ATGGTTGAAGGAAGGAGAAGCATAAGTATGAAAGAATCTAAAGCAACATATCTAAAAGTTGAAATCCTGCTATCGTTGAAAGAGGAATGGGAAAATACGCCACCAACATGGAGGACATCAAGCGATCCATGTGGAGGTCTCTGGGAAGGAGTCAGTTGCAACAATTTTAGAGTCACTGAATTAAAATTACCCTATATGGGTCTTGAAGGCCATCTTAGTGGCGACATTGGAGGCCTTACTGAACTAATAACATTGGACCTGTCGTTTAATACAAATCTCACTGGTCCACTCTCTCCTAGGTTGGGGGATTTGCGAAATTTGAAGACCTTAATTCTAGCTGCATGTGGCTTCAGTGGCAATATTCCCCAAGAGTTGGGAAACCTTACTCAGTTGGTGTCCTTGGCTTTGAATTCAAACCAACTCATTGGTTCAATACCACGTAGTCTTGGAAAGCTCTCCAAACTGGAATTGCTAGACTTGATGGGGAATCAGTTGAATGGACCTCTCCCTGTCTCAACTTTTGATTCACCAGGTCTGGACCTTCTTCTCCAAGCAAAACACTTTCACTTGAGCAAGAACATGCTATCAGGCTCTATACCACCTAAGCTTTTTAGCGCTGATATGAAATTAATACACATAGTATTTGATCAGAATCAATTTTCTGGGAGTATTCCACAAACCTTGGGACTTGTTAAAACCCTTGAACTTCTCCGACTTGATAGGAATTCTCTAACAGGAACTGTCCCATCAGATCTTACCAACTTAAAACAAATACTTCAGTTGAATTTAGCACACAATAATCTGACAGGGCCTTTGCCAAATTTAACTCAAATGACTTCGCTATGTGTTGTGGACCTTAGTTACAACTCATTTGATGCATCAACAGCCCCAGATTGGTTCTCAAGCTTACCATCTCTCACCACTTTGATCGTTGAATATGGGGAACTGCAAGGACCTGTCCCAGAAACAATCTTTAGCTTACCACAGATACAACAAATAATTTGGTACAGAAAACTGGGCCACAATTTATTTGGTGGGGTATTGAGGATGGGTGGTAACATCAGTCAGCATCTGCAGCTTGTTGATTTGGAAGACAATCATATTACCCAACTTGAATTATTGTCTGGATATAACAAAACTTTGATGCTTGAAGGAAATCCTGCGTGCAATAATGTTAATCTCCTCGTAAAACAAAATCATTATTGCCTACCTTCACAATCAGATCAAAAGCCTAATTTTGGGAGTGCAGTACTCAACTGTGAAACTAGATTGTGCTCCAATGGCGAGAAGAATAACCCTCAAAGCTGTGAATGTCAATATCCCTTTGTAGGGTCTTTCTACTTCAGAGGGCCCTCCATCAGAGAATTGTCTAATGACACCTTGTTTCAGTTACTGAAACACAGCCTCTCCGACGACCTAAGTCTTCCTATTGCTTCAGTTGTTATTCAAGATCCTGTGTTTGATAGTGATGATTACCTTCAAATTCAACTTCAACTTTTTCCACCCTTTGGAAAGTATTTCAATCGTTCAGAAATTTTGAGGATTGCGTCTGCATTGAGTCATCAAACTTTCCTTCTTCCCCCTGACTTAGGATCATTTTATTTCATTCCACATGATCAGTACAATTTTTTAGGCAAGTCTAGCATTAGCAACAGGTGGCTTATTGGGATTGCAATTGGTTGTGGCTTACTGCTCCTAACCCTCTTTGGAGTTGGAATAAAGTTGACAAATAATTTCTCCACAAGTAATGAGATAGGAGCTGGAGGATATGGGAAGGTCTATAGAGGAATGACTGGGTATGGACAAGTGTTCGCGATCAAAAGAGCTAGGCAAGGCTCGAAACAGGGTGCACTTGAGTTCAAGACTGAGATTGAATTGCTTTCACGAGTTCATCATAAGAATCTTGTTGGCCTTGTAGGATTTTGTTGCGAGCAGGGAGAACAGATGCTTGTTTATGAATTCATGCCTTATGGATCGCTTCGTGACCTCCTTGATCCCTTCAACCTTTCGGAGAAGCACTATGTGCCTAGTTACTGGAGTGGTTGTATCCATCTTGATTGGAAAAGAAGACTCGAGATAGCACTTGACTCTGCAAGAGGACTAGCTTACCTTCACGAGTTTGCAAATCCTCCAATAATCCATAGAGATATTAAGTCCTCCAATATTCTCTTAGATGAATATTTGAATGCGAAGGTTGCAGACTTTGGCCTGTCCAAGCTTGTATTTGACCATGAAAAGGGACATATTTCTACTGGAGTTAAAGGCACGTGGGGGTATTTAGATCCTGAATATTACACAACGCAACGATTAACTGAGAAGAGTGATGTGTATAGCTTTGGAGTTGTTATGCTTGAATTGATTACTTCTAAGCGGCCAATTGAGAAGGGGACATATTTAGTTCGTGAAGTGGCTCGACTAATGAACAAGAGCGACAAAGCATATTATGGATTGATGCATATAATAGATGCAGCCATTATAAATGAGATGACAAATCTAATTGAGTTTGGAAGGTTTTTGGAGTTGGCAATAAAATGTGTTGAAGAATCAACTATAAATTGCCCCACGATGAGCCAAGTGGTGAAAGCAATTGAAAGTATCTTACAAAATATATCTTCACTCACATAA 2625 40.27 MVEGRRSISMKESKATYLKVEILLSLKEEWENTPPTWRTSSDPCGGLWEGVSCNNFRVTELKLPYMGLEGHLSGDIGGLTELITLDLSFNTNLTGPLSPRLGDLRNLKTLILAACGFSGNIPQELGNLTQLVSLALNSNQLIGSIPRSLGKLSKLELLDLMGNQLNGPLPVSTFDSPGLDLLLQAKHFHLSKNMLSGSIPPKLFSADMKLIHIVFDQNQFSGSIPQTLGLVKTLELLRLDRNSLTGTVPSDLTNLKQILQLNLAHNNLTGPLPNLTQMTSLCVVDLSYNSFDASTAPDWFSSLPSLTTLIVEYGELQGPVPETIFSLPQIQQIIWYRKLGHNLFGGVLRMGGNISQHLQLVDLEDNHITQLELLSGYNKTLMLEGNPACNNVNLLVKQNHYCLPSQSDQKPNFGSAVLNCETRLCSNGEKNNPQSCECQYPFVGSFYFRGPSIRELSNDTLFQLLKHSLSDDLSLPIASVVIQDPVFDSDDYLQIQLQLFPPFGKYFNRSEILRIASALSHQTFLLPPDLGSFYFIPHDQYNFLGKSSISNRWLIGIAIGCGLLLLTLFGVGIKLTNNFSTSNEIGAGGYGKVYRGMTGYGQVFAIKRARQGSKQGALEFKTEIELLSRVHHKNLVGLVGFCCEQGEQMLVYEFMPYGSLRDLLDPFNLSEKHYVPSYWSGCIHLDWKRRLEIALDSARGLAYLHEFANPPIIHRDIKSSNILLDEYLNAKVADFGLSKLVFDHEKGHISTGVKGTWGYLDPEYYTTQRLTEKSDVYSFGVVMLELITSKRPIEKGTYLVREVARLMNKSDKAYYGLMHIIDAAIINEMTNLIEFGRFLELAIKCVEESTINCPTMSQVVKAIESILQNISSLT 874
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 10747100 10763025 + Lsi10G007940.1 Lsi10g00794 672351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00794 874 SUPERFAMILY L domain-like 33 322 - -
Lsi10g00794 874 Gene3D Ribonuclease Inhibitor 19 178 IPR032675 -
Lsi10g00794 874 PANTHER LRR RECEPTOR-LIKE KINASE 13 573 - -
Lsi10g00794 874 Gene3D Phosphorylase Kinase; domain 1 572 654 - -
Lsi10g00794 874 ProSitePatterns Serine/Threonine protein kinases active-site signature. 712 724 IPR008271 GO:0004672|GO:0006468
Lsi10g00794 874 SUPERFAMILY Protein kinase-like (PK-like) 565 861 IPR011009 -
Lsi10g00794 874 ProSiteProfiles Leucine-rich repeat profile. 357 378 IPR001611 GO:0005515
Lsi10g00794 874 SMART serkin_6 579 844 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi10g00794 874 Gene3D Transferase(Phosphotransferase) domain 1 655 872 - -
Lsi10g00794 874 CDD STKc_IRAK 585 866 - -
Lsi10g00794 874 Gene3D Ribonuclease Inhibitor 179 386 IPR032675 -
Lsi10g00794 874 Pfam Protein tyrosine and serine/threonine kinase 581 795 IPR001245 GO:0004672|GO:0006468
Lsi10g00794 874 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 574 870 - -
Lsi10g00794 874 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 13 573 - -
Lsi10g00794 874 ProSiteProfiles Protein kinase domain profile. 579 867 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi10g00794 874 PANTHER LRR RECEPTOR-LIKE KINASE 574 870 - -
Lsi10g00794 874 ProSitePatterns Protein kinases ATP-binding region signature. 585 607 IPR017441 GO:0005524
Lsi10g00794 874 Pfam Leucine rich repeat N-terminal domain 21 54 IPR013210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g02297 Lsi-Chr3:33825145 Lsi10g00794 Lsi-Chr10:10747100 0 dispersed
Lsi10g00794 Lsi-Chr10:10747100 Lsi07g00950 Lsi-Chr7:11908232 3.31E-69 dispersed
Lsi10g00794 Lsi-Chr10:10747100 Lsi04g00839 Lsi-Chr4:8091470 2.00E-69 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83954 PF07714 PK_Tyr_Ser-Thr 4.20E-41 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00794 - - csv:101220026 996.882