Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00807 ATGGCTGAATGGTCTCATCTCCCCAAGGATCTCCTCTACCTCATTGCTCAACATTTCGAATCTCCTTTCGACACCATGCGTTTTCGATCGGTCTGTTCCTCCTGGAGATCCGTCGTCTCTCCCAAACGCCATAGATCACCCTGTCCATTCCCGTTTCTTCCAAATCACGGTACATCCGATACCACATGGGGTTTCAATCTCACCAAGCGCTCCGTTTTTCGTGTTGGGTCTCCCATGGATCGTTCCACATCGCAATCAGATGCCTGGTTGATCAAGGTCGAAGAAGATATGTCCGGAATGATTAAAATATCAAACCCCCTCTCTAAATCTTACTTCAAGCCATTGCCCAAAAATTTCCCCAAGGTACTGAATTTGTTGAATTTTCCGGTTTTTGAGCTTTGTCAAGAATATGTGCTGCACTACCTTAATTTTTGGCCTGTGCGTCATCGCCTTGGCGATGTTGGCGACTTGTATAGCGAGAAAGTCGCTTACAAGTGTTTGAATTACGATGGCAGTGAATTCGTTTTGGTTACTATTCATGTTTCTGGAAAATTGGCTATGTTTAAGTCGGAGGATGGGCGGTGGAGATCGATTCCTCATACTGCGTTGCCTTATGATGATGTTACATTGTTTAAGGGGGAGTTTTATGCGGTTGATAATTCTGGGGCCACCTTCCTGGTGGAATCTCAAGATAAGGTCACGATGATTGCTGAACCTGTATTTGGTGGCGACAAGAAGATTTTGATGGAATGTAATGGTGAACTGTTGTTGGTCGATATGTATTTAACTGTAGACTCTGAAGAGGGCTTTGGTTTGGATGGTGAACTTCCTGAAGGTATTCTACAGGAAAAAACAGTTGGGTTTAAGGTGTTTAAACTACGTGGTGATGGAAGTAAGAAATGGACTGTGGTCCGTGACTTGGGTAACACAATGCTATTCTTGGGAGAAAATTGCTCGTTTTCTGCATCAGCTTCAGGCTTATCTGGTTGTAAAGGAAATTGCATATTCTTTACTGACGGTTTCCTCTGCCCCAGTGTGGATGAAGATGATGTGTTTAAGGGTAGTGACATTGCTATATTTGATATGGAGGTTGGAAGCATATCACCTTTATCTGATTCTCCTGTGTATTCAAGGTTGTTCTGGCCACCCCCAAGTTGGATTACATCAACATCAGGAGGAAGTAATATTCATTCTAAAGGATGTTTGGTGAACTTTTGGATGAGTGATAAATTCGTTGATGAAGAAAAACAGAAAGGAAAAGTGAGGAAAGAC 1272 42.92 MAEWSHLPKDLLYLIAQHFESPFDTMRFRSVCSSWRSVVSPKRHRSPCPFPFLPNHGTSDTTWGFNLTKRSVFRVGSPMDRSTSQSDAWLIKVEEDMSGMIKISNPLSKSYFKPLPKNFPKVLNLLNFPVFELCQEYVLHYLNFWPVRHRLGDVGDLYSEKVAYKCLNYDGSEFVLVTIHVSGKLAMFKSEDGRWRSIPHTALPYDDVTLFKGEFYAVDNSGATFLVESQDKVTMIAEPVFGGDKKILMECNGELLLVDMYLTVDSEEGFGLDGELPEGILQEKTVGFKVFKLRGDGSKKWTVVRDLGNTMLFLGENCSFSASASGLSGCKGNCIFFTDGFLCPSVDEDDVFKGSDIAIFDMEVGSISPLSDSPVYSRLFWPPPSWITSTSGGSNIHSKGCLVNFWMSDKFVDEEKQKGKVRKD 424
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 11015688 11017477 - Lsi10G008070.1 Lsi10g00807 672364

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00807 424 Pfam Protein of unknown function (DUF295) 304 362 IPR005174 -
Lsi10g00807 424 Gene3D - 3 42 - -
Lsi10g00807 424 PANTHER F-BOX PROTEIN SKIP23 1 390 - -
Lsi10g00807 424 SMART fbox_2 7 48 IPR001810 GO:0005515
Lsi10g00807 424 PANTHER F-BOX PROTEIN SKIP23 1 390 - -
Lsi10g00807 424 SUPERFAMILY F-box domain 4 40 IPR036047 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00807 - - - csv:101209524 723.005
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00231 Lsi-Chr4:2360060 Lsi10g00807 Lsi-Chr10:11015688 2.57E-09 dispersed
Lsi04g01785 Lsi-Chr4:25065731 Lsi10g00807 Lsi-Chr10:11015688 1.28E-39 dispersed
Lsi09g00752 Lsi-Chr9:8635446 Lsi10g00807 Lsi-Chr10:11015688 4.72E-38 dispersed
Lsi10g00807 Lsi-Chr10:11015688 Lsi01g00553 Lsi-Chr1:4458162 6.03E-46 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g209 . . . . . . . . . . Cma02g00277 . Car02g00160 . . . . . . . . . . . . . . . . . . . . . . Lsi10g00807 . . . . . . . . . . . . Cmo02g00273 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007140 1 1 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 3 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi10g00807 Lsi_Chr10 FPKM 459.400238 496.927551 919.707825 924.436768 451.931274 448.597717 443.878021 1459.46228 1438.697876 1445.540894