Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00810 ATGGATTTTTCTCTCAAGTCTTTCAAATCTCATGCCTCTTACAAGTACGTGAGGAAGCTTTCTGGAGCAGATGCTACTCAAGATCAAGAGCAGCTTCCTATTCTTTCAGATCAGCAACACTCGAATATGGCGGTCTCCGATGCATCTGATCGGAAAGAGGTTATCGTCAAGGTCGATCAGGACGATGCTTCGAGTAATGCTTCGTTCAGAGCTATGGAGTTGGTGAACACCACCAGTGGGAGGATTTGGCGGGAGTCCAGCTATGATTTCTGGAATGATAGGGATAATAGACGGAATAATGGTGAAGTTACTAATGCCGATGGTGGTGGTAGGAGTGACGAGTTTGAGTTTAGGCAACACGGGAAGGATGTGGAAGATCCGCCGTCGAAGCTCATTGGACAGTTTCTTCACAAGCAGAAGGCGTCGGGAGAGATGTCTTTAGATATGGATATGGAAATGCTGGAACTACCACAGGATAAGACTCTGCTTCCTACGGTGGCGGAATCTCCGATGCGACGGAGTTCGAGAGAGTTGAAAGTTGCGTTCGAGTCTATTTCAGAAATTTCTGAAAACGATTCGATGCGTAGACGGCACAGAGACTCTCTGCCGGTTGATGAAGAACATAGAGGACAGCAACTGCAGCAGCGTGAGCGTCGAGCGTATGGCAGCAATGGTGAAGATGATGGTGCTGCTGAGGTTTTGAGATGTACATCTAATTCGTCCTTTGAAAGAGATGTATCGTTCCAGAGGAAATCTAGCTTGCTTAGGGCTAAAACTAAGTCTAGATTGCTGGATCCACCTGAACACCAAGACCGGAGGTCAGGGCGTGTACCAAAATCAGGGCAAGTTCGCTCTGGTTTATTGTCAAAAGCCTTAGATGAGGAAGACGATGATCCATTCTTGGAAGAAGATCTTCCGGATGAGTATAAGAAGGCTAATCTAGGTGTTTTGACTCTGTTACAGTGGGCGAGTTTGATTTTGATAATCGCAGCATTGATTTGCACTTTGACAATTCGTTACTGGAGGAGAAAGAAACTATGGAAGCTTGAACTATGGAAATGGGAGGTTATGATTCTTGTTCTGATATGTGGAAGGCTGGTTTCTGGTTGGGGGATTCGGATAATTGTCTTCTTCATTGAAAGAAACTTTCTACTGCGTAAGAGGGTTCTATACTTTGTTTACGGAGTCAGAAAGGCAGTCCAAAATTGTCTTTGGTTGGGTCTAGTTTTAATTGCTTGGAACTTCCTGTTTGATGACAAAGTTCAAAGAGAAGTAAAAAGCAATGCCCTAGAGTATGTGACCAAAGTATTGGTATGTCTTCTTGTAAGCACTTTGGTTTGGCTAGTAAAAACGCTAATGGTGAAGGTTTTGGCCTCTTCTTTCCATGTGAGTACATATTTTGATAGGATTCAAGATGCATTGTTTAACCAATATGTAATTGAGACACTGTCAGGGCCTCCATTGATAGAGATTCAAAAGAATGAGGAAGAAGAAGAGAGACTTGCAGAAGAGGTAATAAAGTTGCAGAATGCAGGGGCTACCATCCCTCCTGATTTAAAGGCAACTGCCTTTTCAACAACTCAAAAGGGTGGGAGAGTGATAGGGAGTGGAAGGTTGCAGAAAAGTCCTCGTGGAAGAAGTGACAAGCTATCAAGGACACTGTCTAAGAAGGGTGATGAGGGTATAACAATTGATCACTTGCATAAGCTCAGTCCTAAGAATGTGTCTGCTTGGAATATGAAGAGGTTGATGAATATCATTAGACATGGGGCTCTTTCAACTTTGGATGAACAGATCAAAGATTCAACTCATGAGGACGAATCAACCACACAGATCAAGAGTGAATATGAGGCAAAAGTTGCTGCTAAGAAGATTTTTCTGAACGTGGCTAGGCGTGGTTCTAAATATATCTACCTAGAGGACTTGATGCGTTTCATGGAAAAAGATGAGGCTTCAAAAACCATGGGTCTCTTTGAAGGAGCATGTGAGAGTAGGAAAATAAGCAAATCCTCATTGAAAAACTGGGTGGTTAATGCCTTTAGAGAACGAAGGGCCCTAGCTTTGACATTAAACGATACCAAAACAGCTGTGAACAAACTTCACCGCATGGTGAATATTTTAGTTTCTGTCATTATTCTGGTTATTTGGCTATTGATTCTGGGTATAGCCACTAGCAAATTTCTCCTATTCGTGACCTCTCAACTTGTCCTTGTCGCATTTGTGTTTGGAAATACTTGCAAGACTGTTTTTGAATCAATCATCTTCTTATTTGTGATGCATCCATTTGATGTCGGAGACCGATGCGAAATCGATGGCGTGCAGTTCCATGAATTTCAGATGATTGTAGAAGAAATGAACATCTTGACGACCATTTTTCTAAGATATGACAACCAGAAGATCATATTTCCGAACAGTCTTCTCGCGACGAAGGCTATCCACAACTTCTATCGTAGTCCTGACATGGGAGATGCTGTAGAATTCTGTCTTCACATATGTACTCCGCCTGAGAAAATTGCTATTATGAGACAAAGAATCATAAGGTACGTGGAGAAAAGAAAACACAGTTTACTAAAAATGCAAACAACCCTTCATTTCTCTGACCTCTCTACTATTGTTGTTGATGTTTTTTACATTGAGGGCAAGAAAGAGCATTGGTGTCCTGCGCCAATGATTGTCCTCAAGGATGTAGAAGAGTTAAACAGAATGAGAATAGCAATATGGCTTACTCATAGAATGAACCATCAAGACATGGGGGAGAGGTGGACTAGGAGAGCTCTTTTGGTCGAAGAACTTGTTAAAATTTTCCAAGAGCTCGACCTTCAATACCGTCTCCTACCACTCGATATCAATGTTCGATCCTTGCCTCCAGTGAACTCTACTAGTCTTCCTTCAAGATAA 2898 42.31 MDFSLKSFKSHASYKYVRKLSGADATQDQEQLPILSDQQHSNMAVSDASDRKEVIVKVDQDDASSNASFRAMELVNTTSGRIWRESSYDFWNDRDNRRNNGEVTNADGGGRSDEFEFRQHGKDVEDPPSKLIGQFLHKQKASGEMSLDMDMEMLELPQDKTLLPTVAESPMRRSSRELKVAFESISEISENDSMRRRHRDSLPVDEEHRGQQLQQRERRAYGSNGEDDGAAEVLRCTSNSSFERDVSFQRKSSLLRAKTKSRLLDPPEHQDRRSGRVPKSGQVRSGLLSKALDEEDDDPFLEEDLPDEYKKANLGVLTLLQWASLILIIAALICTLTIRYWRRKKLWKLELWKWEVMILVLICGRLVSGWGIRIIVFFIERNFLLRKRVLYFVYGVRKAVQNCLWLGLVLIAWNFLFDDKVQREVKSNALEYVTKVLVCLLVSTLVWLVKTLMVKVLASSFHVSTYFDRIQDALFNQYVIETLSGPPLIEIQKNEEEEERLAEEVIKLQNAGATIPPDLKATAFSTTQKGGRVIGSGRLQKSPRGRSDKLSRTLSKKGDEGITIDHLHKLSPKNVSAWNMKRLMNIIRHGALSTLDEQIKDSTHEDESTTQIKSEYEAKVAAKKIFLNVARRGSKYIYLEDLMRFMEKDEASKTMGLFEGACESRKISKSSLKNWVVNAFRERRALALTLNDTKTAVNKLHRMVNILVSVIILVIWLLILGIATSKFLLFVTSQLVLVAFVFGNTCKTVFESIIFLFVMHPFDVGDRCEIDGVQFHEFQMIVEEMNILTTIFLRYDNQKIIFPNSLLATKAIHNFYRSPDMGDAVEFCLHICTPPEKIAIMRQRIIRYVEKRKHSLLKMQTTLHFSDLSTIVVDVFYIEGKKEHWCPAPMIVLKDVEELNRMRIAIWLTHRMNHQDMGERWTRRALLVEELVKIFQELDLQYRLLPLDINVRSLPPVNSTSLPSR 965
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 11068664 11073272 + Lsi10G008100.1 Lsi10g00810 672367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00810 965 MobiDBLite consensus disorder prediction 190 229 - -
Lsi10g00810 965 MobiDBLite consensus disorder prediction 531 555 - -
Lsi10g00810 965 MobiDBLite consensus disorder prediction 94 129 - -
Lsi10g00810 965 MobiDBLite consensus disorder prediction 259 283 - -
Lsi10g00810 965 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 877 963 IPR016688 -
Lsi10g00810 965 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 6 855 IPR016688 -
Lsi10g00810 965 Pfam Mechanosensitive ion channel 703 867 IPR006685 GO:0016020|GO:0055085
Lsi10g00810 965 MobiDBLite consensus disorder prediction 190 225 - -
Lsi10g00810 965 PIRSF Memb_At2g17000 37 871 IPR016688 -
Lsi10g00810 965 PIRSF Memb_At2g17000 856 965 IPR016688 -
Lsi10g00810 965 SUPERFAMILY Sm-like ribonucleoproteins 751 815 IPR010920 -
Lsi10g00810 965 MobiDBLite consensus disorder prediction 109 127 - -
Lsi10g00810 965 MobiDBLite consensus disorder prediction 261 278 - -
Lsi10g00810 965 Coils Coil 491 514 - -
Lsi10g00810 965 Gene3D - 761 815 IPR023408 -
Lsi10g00810 965 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 877 963 - -
Lsi10g00810 965 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 6 855 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01392 Lsi-Chr4:21731486 Lsi10g00810 Lsi-Chr10:11068664 4.06E-149 dispersed
Lsi06g00313 Lsi-Chr6:3564957 Lsi10g00810 Lsi-Chr10:11068664 5.68E-171 dispersed
Lsi09g01098 Lsi-Chr9:17514695 Lsi10g00810 Lsi-Chr10:11068664 7.49E-122 dispersed
Lsi10g00810 Lsi-Chr10:11068664 Lsi11g01224 Lsi-Chr11:20834099 0 dispersed
Lsi10g00810 Lsi-Chr10:11068664 Lsi10g00812 Lsi-Chr10:11138221 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00810 K22048 - csv:101210264 1569.67