Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00810 ATGGATTTTTCTCTCAAGTCTTTCAAATCTCATGCCTCTTACAAGTACGTGAGGAAGCTTTCTGGAGCAGATGCTACTCAAGATCAAGAGCAGCTTCCTATTCTTTCAGATCAGCAACACTCGAATATGGCGGTCTCCGATGCATCTGATCGGAAAGAGGTTATCGTCAAGGTCGATCAGGACGATGCTTCGAGTAATGCTTCGTTCAGAGCTATGGAGTTGGTGAACACCACCAGTGGGAGGATTTGGCGGGAGTCCAGCTATGATTTCTGGAATGATAGGGATAATAGACGGAATAATGGTGAAGTTACTAATGCCGATGGTGGTGGTAGGAGTGACGAGTTTGAGTTTAGGCAACACGGGAAGGATGTGGAAGATCCGCCGTCGAAGCTCATTGGACAGTTTCTTCACAAGCAGAAGGCGTCGGGAGAGATGTCTTTAGATATGGATATGGAAATGCTGGAACTACCACAGGATAAGACTCTGCTTCCTACGGTGGCGGAATCTCCGATGCGACGGAGTTCGAGAGAGTTGAAAGTTGCGTTCGAGTCTATTTCAGAAATTTCTGAAAACGATTCGATGCGTAGACGGCACAGAGACTCTCTGCCGGTTGATGAAGAACATAGAGGACAGCAACTGCAGCAGCGTGAGCGTCGAGCGTATGGCAGCAATGGTGAAGATGATGGTGCTGCTGAGGTTTTGAGATGTACATCTAATTCGTCCTTTGAAAGAGATGTATCGTTCCAGAGGAAATCTAGCTTGCTTAGGGCTAAAACTAAGTCTAGATTGCTGGATCCACCTGAACACCAAGACCGGAGGTCAGGGCGTGTACCAAAATCAGGGCAAGTTCGCTCTGGTTTATTGTCAAAAGCCTTAGATGAGGAAGACGATGATCCATTCTTGGAAGAAGATCTTCCGGATGAGTATAAGAAGGCTAATCTAGGTGTTTTGACTCTGTTACAGTGGGCGAGTTTGATTTTGATAATCGCAGCATTGATTTGCACTTTGACAATTCGTTACTGGAGGAGAAAGAAACTATGGAAGCTTGAACTATGGAAATGGGAGGTTATGATTCTTGTTCTGATATGTGGAAGGCTGGTTTCTGGTTGGGGGATTCGGATAATTGTCTTCTTCATTGAAAGAAACTTTCTACTGCGTAAGAGGGTTCTATACTTTGTTTACGGAGTCAGAAAGGCAGTCCAAAATTGTCTTTGGTTGGGTCTAGTTTTAATTGCTTGGAACTTCCTGTTTGATGACAAAGTTCAAAGAGAAGTAAAAAGCAATGCCCTAGAGTATGTGACCAAAGTATTGGTATGTCTTCTTGTAAGCACTTTGGTTTGGCTAGTAAAAACGCTAATGGTGAAGGTTTTGGCCTCTTCTTTCCATGTGAGTACATATTTTGATAGGATTCAAGATGCATTGTTTAACCAATATGTAATTGAGACACTGTCAGGGCCTCCATTGATAGAGATTCAAAAGAATGAGGAAGAAGAAGAGAGACTTGCAGAAGAGGTAATAAAGTTGCAGAATGCAGGGGCTACCATCCCTCCTGATTTAAAGGCAACTGCCTTTTCAACAACTCAAAAGGGTGGGAGAGTGATAGGGAGTGGAAGGTTGCAGAAAAGTCCTCGTGGAAGAAGTGACAAGCTATCAAGGACACTGTCTAAGAAGGGTGATGAGGGTATAACAATTGATCACTTGCATAAGCTCAGTCCTAAGAATGTGTCTGCTTGGAATATGAAGAGGTTGATGAATATCATTAGACATGGGGCTCTTTCAACTTTGGATGAACAGATCAAAGATTCAACTCATGAGGACGAATCAACCACACAGATCAAGAGTGAATATGAGGCAAAAGTTGCTGCTAAGAAGATTTTTCTGAACGTGGCTAGGCGTGGTTCTAAATATATCTACCTAGAGGACTTGATGCGTTTCATGGAAAAAGATGAGGCTTCAAAAACCATGGGTCTCTTTGAAGGAGCATGTGAGAGTAGGAAAATAAGCAAATCCTCATTGAAAAACTGGGTGGTTAATGCCTTTAGAGAACGAAGGGCCCTAGCTTTGACATTAAACGATACCAAAACAGCTGTGAACAAACTTCACCGCATGGTGAATATTTTAGTTTCTGTCATTATTCTGGTTATTTGGCTATTGATTCTGGGTATAGCCACTAGCAAATTTCTCCTATTCGTGACCTCTCAACTTGTCCTTGTCGCATTTGTGTTTGGAAATACTTGCAAGACTGTTTTTGAATCAATCATCTTCTTATTTGTGATGCATCCATTTGATGTCGGAGACCGATGCGAAATCGATGGCGTGCAGTTCCATGAATTTCAGATGATTGTAGAAGAAATGAACATCTTGACGACCATTTTTCTAAGATATGACAACCAGAAGATCATATTTCCGAACAGTCTTCTCGCGACGAAGGCTATCCACAACTTCTATCGTAGTCCTGACATGGGAGATGCTGTAGAATTCTGTCTTCACATATGTACTCCGCCTGAGAAAATTGCTATTATGAGACAAAGAATCATAAGGTACGTGGAGAAAAGAAAACACAGTTTACTAAAAATGCAAACAACCCTTCATTTCTCTGACCTCTCTACTATTGTTGTTGATGTTTTTTACATTGAGGGCAAGAAAGAGCATTGGTGTCCTGCGCCAATGATTGTCCTCAAGGATGTAGAAGAGTTAAACAGAATGAGAATAGCAATATGGCTTACTCATAGAATGAACCATCAAGACATGGGGGAGAGGTGGACTAGGAGAGCTCTTTTGGTCGAAGAACTTGTTAAAATTTTCCAAGAGCTCGACCTTCAATACCGTCTCCTACCACTCGATATCAATGTTCGATCCTTGCCTCCAGTGAACTCTACTAGTCTTCCTTCAAGATAA 2898 42.31 MDFSLKSFKSHASYKYVRKLSGADATQDQEQLPILSDQQHSNMAVSDASDRKEVIVKVDQDDASSNASFRAMELVNTTSGRIWRESSYDFWNDRDNRRNNGEVTNADGGGRSDEFEFRQHGKDVEDPPSKLIGQFLHKQKASGEMSLDMDMEMLELPQDKTLLPTVAESPMRRSSRELKVAFESISEISENDSMRRRHRDSLPVDEEHRGQQLQQRERRAYGSNGEDDGAAEVLRCTSNSSFERDVSFQRKSSLLRAKTKSRLLDPPEHQDRRSGRVPKSGQVRSGLLSKALDEEDDDPFLEEDLPDEYKKANLGVLTLLQWASLILIIAALICTLTIRYWRRKKLWKLELWKWEVMILVLICGRLVSGWGIRIIVFFIERNFLLRKRVLYFVYGVRKAVQNCLWLGLVLIAWNFLFDDKVQREVKSNALEYVTKVLVCLLVSTLVWLVKTLMVKVLASSFHVSTYFDRIQDALFNQYVIETLSGPPLIEIQKNEEEEERLAEEVIKLQNAGATIPPDLKATAFSTTQKGGRVIGSGRLQKSPRGRSDKLSRTLSKKGDEGITIDHLHKLSPKNVSAWNMKRLMNIIRHGALSTLDEQIKDSTHEDESTTQIKSEYEAKVAAKKIFLNVARRGSKYIYLEDLMRFMEKDEASKTMGLFEGACESRKISKSSLKNWVVNAFRERRALALTLNDTKTAVNKLHRMVNILVSVIILVIWLLILGIATSKFLLFVTSQLVLVAFVFGNTCKTVFESIIFLFVMHPFDVGDRCEIDGVQFHEFQMIVEEMNILTTIFLRYDNQKIIFPNSLLATKAIHNFYRSPDMGDAVEFCLHICTPPEKIAIMRQRIIRYVEKRKHSLLKMQTTLHFSDLSTIVVDVFYIEGKKEHWCPAPMIVLKDVEELNRMRIAIWLTHRMNHQDMGERWTRRALLVEELVKIFQELDLQYRLLPLDINVRSLPPVNSTSLPSR 965
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 11068664 11073272 + Lsi10G008100.1 Lsi10g00810 672367

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00810 965 MobiDBLite consensus disorder prediction 190 229 - -
Lsi10g00810 965 MobiDBLite consensus disorder prediction 531 555 - -
Lsi10g00810 965 MobiDBLite consensus disorder prediction 94 129 - -
Lsi10g00810 965 MobiDBLite consensus disorder prediction 259 283 - -
Lsi10g00810 965 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 877 963 IPR016688 -
Lsi10g00810 965 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 6 855 IPR016688 -
Lsi10g00810 965 Pfam Mechanosensitive ion channel 703 867 IPR006685 GO:0016020|GO:0055085
Lsi10g00810 965 MobiDBLite consensus disorder prediction 190 225 - -
Lsi10g00810 965 PIRSF Memb_At2g17000 37 871 IPR016688 -
Lsi10g00810 965 PIRSF Memb_At2g17000 856 965 IPR016688 -
Lsi10g00810 965 SUPERFAMILY Sm-like ribonucleoproteins 751 815 IPR010920 -
Lsi10g00810 965 MobiDBLite consensus disorder prediction 109 127 - -
Lsi10g00810 965 MobiDBLite consensus disorder prediction 261 278 - -
Lsi10g00810 965 Coils Coil 491 514 - -
Lsi10g00810 965 Gene3D - 761 815 IPR023408 -
Lsi10g00810 965 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 877 963 - -
Lsi10g00810 965 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 6 855 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00810 K22048 MSL4S; mechanosensitive ion channel protein 4/5/6/7/8/9/10 - csv:101210264 1569.67
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01392 Lsi-Chr4:21731486 Lsi10g00810 Lsi-Chr10:11068664 4.06E-149 dispersed
Lsi06g00313 Lsi-Chr6:3564957 Lsi10g00810 Lsi-Chr10:11068664 5.68E-171 dispersed
Lsi09g01098 Lsi-Chr9:17514695 Lsi10g00810 Lsi-Chr10:11068664 7.49E-122 dispersed
Lsi10g00810 Lsi-Chr10:11068664 Lsi11g01224 Lsi-Chr11:20834099 0 dispersed
Lsi10g00810 Lsi-Chr10:11068664 Lsi10g00812 Lsi-Chr10:11138221 0 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g216 . Blo15g00394 Bda06g00468 . Bpe07g00704 . . Bma12g00910 . Cmo11g01757 . . . . Sed01g2461 . . Bhi05g01669 Tan02g0642 Cmetu01g0333 . . . . Cla02g00401 Cam02g0406 Cec02g0406 Cco02g0422 Clacu02g0409 Cmu02g0405 Cre02g0740 Cone12ag1250 . Cone3ag0976 Cone10ag1228 Lsi10g00810 . . Cme01g01219 . . . . Bpe15g00798 . . . . . . Cma11g01360 . . . Cpe16g00335 . . . . . . . . . . . . . . . . . Chy01g00654 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi05g02054 . 139 631 Mechanosensitive Ion Channel Family AT4G00290 52.7 8.1e-137 484.2
Lsi05g00779 . 67 732 Mechanosensitive Ion Channel Family AT5G10490 50.9 1.8e-163 573.2
Lsi08g01024 . 10 643 Mechanosensitive Ion Channel Family AT1G58200 50.9 3.1e-163 572.4
Lsi05g00779 . 43 510 Mechanosensitive Ion Channel Family AT1G58200 56.7 1.7e-145 513.5
Lsi10g00810 . 43 963 Mechanosensitive Ion Channel Family AT1G53470 53.5 8.5e-254 873.6
Lsi10g00812 CCT 16 770 Mechanosensitive Ion Channel Family AT1G53470 51.2 3.2e-213 738.8
Lsi10g00810 . 43 961 Mechanosensitive Ion Channel Family AT3G14810 51.5 8.4e-243 837.0
Lsi10g00812 CCT 17 770 Mechanosensitive Ion Channel Family AT3G14810 51.5 1.6e-209 726.5
Lsi10g00810 . 43 963 Mechanosensitive Ion Channel Family AT1G78610 57.4 1.7e-275 945.7
Lsi10g00812 CCT 15 770 Mechanosensitive Ion Channel Family AT1G78610 55.5 1.3e-235 813.1
Lsi10g00810 . 226 963 Mechanosensitive Ion Channel Family AT2G17000 58.4 3.7e-230 795.0
Lsi10g00812 CCT 167 769 Mechanosensitive Ion Channel Family AT2G17000 60.2 5.0e-203 704.9
Lsi11g01224 CCT 264 1022 Mechanosensitive Ion Channel Family AT2G17000 50.3 8.5e-203 704.1
Lsi10g00810 . 1 676 Mechanosensitive Ion Channel Family AT2G17010 50.6 1.2e-162 570.5
Lsi10g00812 CCT 147 536 Mechanosensitive Ion Channel Family AT2G17010 61.2 5.8e-138 488.4
Lsi04g01392 . 72 742 Mechanosensitive Ion Channel Family AT5G12080 53.7 1.4e-182 636.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001937 2 3 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 5 2 2 2 2 2 2 2 3 2 5 3 1 67
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi10g00810 Lsi_Chr10 FPKM 0.316362 0.223252 0.0 0.0 0.942618 0.958809 0.596943 1.435911 1.440431 1.607621