Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi10g00810 | ATGGATTTTTCTCTCAAGTCTTTCAAATCTCATGCCTCTTACAAGTACGTGAGGAAGCTTTCTGGAGCAGATGCTACTCAAGATCAAGAGCAGCTTCCTATTCTTTCAGATCAGCAACACTCGAATATGGCGGTCTCCGATGCATCTGATCGGAAAGAGGTTATCGTCAAGGTCGATCAGGACGATGCTTCGAGTAATGCTTCGTTCAGAGCTATGGAGTTGGTGAACACCACCAGTGGGAGGATTTGGCGGGAGTCCAGCTATGATTTCTGGAATGATAGGGATAATAGACGGAATAATGGTGAAGTTACTAATGCCGATGGTGGTGGTAGGAGTGACGAGTTTGAGTTTAGGCAACACGGGAAGGATGTGGAAGATCCGCCGTCGAAGCTCATTGGACAGTTTCTTCACAAGCAGAAGGCGTCGGGAGAGATGTCTTTAGATATGGATATGGAAATGCTGGAACTACCACAGGATAAGACTCTGCTTCCTACGGTGGCGGAATCTCCGATGCGACGGAGTTCGAGAGAGTTGAAAGTTGCGTTCGAGTCTATTTCAGAAATTTCTGAAAACGATTCGATGCGTAGACGGCACAGAGACTCTCTGCCGGTTGATGAAGAACATAGAGGACAGCAACTGCAGCAGCGTGAGCGTCGAGCGTATGGCAGCAATGGTGAAGATGATGGTGCTGCTGAGGTTTTGAGATGTACATCTAATTCGTCCTTTGAAAGAGATGTATCGTTCCAGAGGAAATCTAGCTTGCTTAGGGCTAAAACTAAGTCTAGATTGCTGGATCCACCTGAACACCAAGACCGGAGGTCAGGGCGTGTACCAAAATCAGGGCAAGTTCGCTCTGGTTTATTGTCAAAAGCCTTAGATGAGGAAGACGATGATCCATTCTTGGAAGAAGATCTTCCGGATGAGTATAAGAAGGCTAATCTAGGTGTTTTGACTCTGTTACAGTGGGCGAGTTTGATTTTGATAATCGCAGCATTGATTTGCACTTTGACAATTCGTTACTGGAGGAGAAAGAAACTATGGAAGCTTGAACTATGGAAATGGGAGGTTATGATTCTTGTTCTGATATGTGGAAGGCTGGTTTCTGGTTGGGGGATTCGGATAATTGTCTTCTTCATTGAAAGAAACTTTCTACTGCGTAAGAGGGTTCTATACTTTGTTTACGGAGTCAGAAAGGCAGTCCAAAATTGTCTTTGGTTGGGTCTAGTTTTAATTGCTTGGAACTTCCTGTTTGATGACAAAGTTCAAAGAGAAGTAAAAAGCAATGCCCTAGAGTATGTGACCAAAGTATTGGTATGTCTTCTTGTAAGCACTTTGGTTTGGCTAGTAAAAACGCTAATGGTGAAGGTTTTGGCCTCTTCTTTCCATGTGAGTACATATTTTGATAGGATTCAAGATGCATTGTTTAACCAATATGTAATTGAGACACTGTCAGGGCCTCCATTGATAGAGATTCAAAAGAATGAGGAAGAAGAAGAGAGACTTGCAGAAGAGGTAATAAAGTTGCAGAATGCAGGGGCTACCATCCCTCCTGATTTAAAGGCAACTGCCTTTTCAACAACTCAAAAGGGTGGGAGAGTGATAGGGAGTGGAAGGTTGCAGAAAAGTCCTCGTGGAAGAAGTGACAAGCTATCAAGGACACTGTCTAAGAAGGGTGATGAGGGTATAACAATTGATCACTTGCATAAGCTCAGTCCTAAGAATGTGTCTGCTTGGAATATGAAGAGGTTGATGAATATCATTAGACATGGGGCTCTTTCAACTTTGGATGAACAGATCAAAGATTCAACTCATGAGGACGAATCAACCACACAGATCAAGAGTGAATATGAGGCAAAAGTTGCTGCTAAGAAGATTTTTCTGAACGTGGCTAGGCGTGGTTCTAAATATATCTACCTAGAGGACTTGATGCGTTTCATGGAAAAAGATGAGGCTTCAAAAACCATGGGTCTCTTTGAAGGAGCATGTGAGAGTAGGAAAATAAGCAAATCCTCATTGAAAAACTGGGTGGTTAATGCCTTTAGAGAACGAAGGGCCCTAGCTTTGACATTAAACGATACCAAAACAGCTGTGAACAAACTTCACCGCATGGTGAATATTTTAGTTTCTGTCATTATTCTGGTTATTTGGCTATTGATTCTGGGTATAGCCACTAGCAAATTTCTCCTATTCGTGACCTCTCAACTTGTCCTTGTCGCATTTGTGTTTGGAAATACTTGCAAGACTGTTTTTGAATCAATCATCTTCTTATTTGTGATGCATCCATTTGATGTCGGAGACCGATGCGAAATCGATGGCGTGCAGTTCCATGAATTTCAGATGATTGTAGAAGAAATGAACATCTTGACGACCATTTTTCTAAGATATGACAACCAGAAGATCATATTTCCGAACAGTCTTCTCGCGACGAAGGCTATCCACAACTTCTATCGTAGTCCTGACATGGGAGATGCTGTAGAATTCTGTCTTCACATATGTACTCCGCCTGAGAAAATTGCTATTATGAGACAAAGAATCATAAGGTACGTGGAGAAAAGAAAACACAGTTTACTAAAAATGCAAACAACCCTTCATTTCTCTGACCTCTCTACTATTGTTGTTGATGTTTTTTACATTGAGGGCAAGAAAGAGCATTGGTGTCCTGCGCCAATGATTGTCCTCAAGGATGTAGAAGAGTTAAACAGAATGAGAATAGCAATATGGCTTACTCATAGAATGAACCATCAAGACATGGGGGAGAGGTGGACTAGGAGAGCTCTTTTGGTCGAAGAACTTGTTAAAATTTTCCAAGAGCTCGACCTTCAATACCGTCTCCTACCACTCGATATCAATGTTCGATCCTTGCCTCCAGTGAACTCTACTAGTCTTCCTTCAAGATAA | 2898 | 42.31 | MDFSLKSFKSHASYKYVRKLSGADATQDQEQLPILSDQQHSNMAVSDASDRKEVIVKVDQDDASSNASFRAMELVNTTSGRIWRESSYDFWNDRDNRRNNGEVTNADGGGRSDEFEFRQHGKDVEDPPSKLIGQFLHKQKASGEMSLDMDMEMLELPQDKTLLPTVAESPMRRSSRELKVAFESISEISENDSMRRRHRDSLPVDEEHRGQQLQQRERRAYGSNGEDDGAAEVLRCTSNSSFERDVSFQRKSSLLRAKTKSRLLDPPEHQDRRSGRVPKSGQVRSGLLSKALDEEDDDPFLEEDLPDEYKKANLGVLTLLQWASLILIIAALICTLTIRYWRRKKLWKLELWKWEVMILVLICGRLVSGWGIRIIVFFIERNFLLRKRVLYFVYGVRKAVQNCLWLGLVLIAWNFLFDDKVQREVKSNALEYVTKVLVCLLVSTLVWLVKTLMVKVLASSFHVSTYFDRIQDALFNQYVIETLSGPPLIEIQKNEEEEERLAEEVIKLQNAGATIPPDLKATAFSTTQKGGRVIGSGRLQKSPRGRSDKLSRTLSKKGDEGITIDHLHKLSPKNVSAWNMKRLMNIIRHGALSTLDEQIKDSTHEDESTTQIKSEYEAKVAAKKIFLNVARRGSKYIYLEDLMRFMEKDEASKTMGLFEGACESRKISKSSLKNWVVNAFRERRALALTLNDTKTAVNKLHRMVNILVSVIILVIWLLILGIATSKFLLFVTSQLVLVAFVFGNTCKTVFESIIFLFVMHPFDVGDRCEIDGVQFHEFQMIVEEMNILTTIFLRYDNQKIIFPNSLLATKAIHNFYRSPDMGDAVEFCLHICTPPEKIAIMRQRIIRYVEKRKHSLLKMQTTLHFSDLSTIVVDVFYIEGKKEHWCPAPMIVLKDVEELNRMRIAIWLTHRMNHQDMGERWTRRALLVEELVKIFQELDLQYRLLPLDINVRSLPPVNSTSLPSR | 965 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 11068664 | 11073272 | + | Lsi10G008100.1 | Lsi10g00810 | 672367 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi10g00810 | 965 | MobiDBLite | consensus disorder prediction | 190 | 229 | - | - | |
Lsi10g00810 | 965 | MobiDBLite | consensus disorder prediction | 531 | 555 | - | - | |
Lsi10g00810 | 965 | MobiDBLite | consensus disorder prediction | 94 | 129 | - | - | |
Lsi10g00810 | 965 | MobiDBLite | consensus disorder prediction | 259 | 283 | - | - | |
Lsi10g00810 | 965 | PANTHER | MECHANOSENSITIVE ION CHANNEL PROTEIN 5 | 877 | 963 | IPR016688 | - | |
Lsi10g00810 | 965 | PANTHER | MECHANOSENSITIVE ION CHANNEL PROTEIN 5 | 6 | 855 | IPR016688 | - | |
Lsi10g00810 | 965 | Pfam | Mechanosensitive ion channel | 703 | 867 | IPR006685 | GO:0016020|GO:0055085 | |
Lsi10g00810 | 965 | MobiDBLite | consensus disorder prediction | 190 | 225 | - | - | |
Lsi10g00810 | 965 | PIRSF | Memb_At2g17000 | 37 | 871 | IPR016688 | - | |
Lsi10g00810 | 965 | PIRSF | Memb_At2g17000 | 856 | 965 | IPR016688 | - | |
Lsi10g00810 | 965 | SUPERFAMILY | Sm-like ribonucleoproteins | 751 | 815 | IPR010920 | - | |
Lsi10g00810 | 965 | MobiDBLite | consensus disorder prediction | 109 | 127 | - | - | |
Lsi10g00810 | 965 | MobiDBLite | consensus disorder prediction | 261 | 278 | - | - | |
Lsi10g00810 | 965 | Coils | Coil | 491 | 514 | - | - | |
Lsi10g00810 | 965 | Gene3D | - | 761 | 815 | IPR023408 | - | |
Lsi10g00810 | 965 | PANTHER | MECHANOSENSITIVE ION CHANNEL PROTEIN | 877 | 963 | - | - | |
Lsi10g00810 | 965 | PANTHER | MECHANOSENSITIVE ION CHANNEL PROTEIN | 6 | 855 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi04g01392 | Lsi-Chr4:21731486 | Lsi10g00810 | Lsi-Chr10:11068664 | 4.06E-149 | dispersed | |
Lsi06g00313 | Lsi-Chr6:3564957 | Lsi10g00810 | Lsi-Chr10:11068664 | 5.68E-171 | dispersed | |
Lsi09g01098 | Lsi-Chr9:17514695 | Lsi10g00810 | Lsi-Chr10:11068664 | 7.49E-122 | dispersed | |
Lsi10g00810 | Lsi-Chr10:11068664 | Lsi11g01224 | Lsi-Chr11:20834099 | 0 | dispersed | |
Lsi10g00810 | Lsi-Chr10:11068664 | Lsi10g00812 | Lsi-Chr10:11138221 | 0 | proximal |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi10g00810 | K22048 | - | csv:101210264 | 1569.67 |