Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00812 ATGTCGGGTAATGCTTCGTTGAGAGGTATGAAGTTGGTGAACACCAGTGGGAAGATTTGGCAGGAGTCCAGCAATGATTTCTGGAATGATAGTGATAATAGACTAAATAATGGCGAAGTTACGAATGGTAATGGTGGTGGTGGTAGGAGTGAGGATTTTGAGCTTAGGCAACAAAGGAAGGATGTGGAAGATCCGCCGTCGAAGCTTATTGGACAGTTGCTTCACAAGCAGAAGGGGTCCGGAGAGATATCTTTAGATATGGATATGGAAATGCTGGAACTACCACAGGATAAGACTCTGCTTCCTATGGTCGCGGATTCTCCGATGCGAAGACGGCACAGAGACTCTCTGCCGGTTGATGAAGAACATAGAGGAAAGCAACCGCAGCAGCGTGATCTTCGAGCGCATGGCAGCAATGGTGAAGATGATGGTGGTGCTGAGGTTTTGAGATGCACATCTAATTCGTCCTTTGGAAGAGATGTGTCGTTCCAGAGGAAATCAGGGCAAGTTCGCCGTGGTTTACTGTCAAAAGCCATAGATGAGGAAGACGATGATCCATTCTTGGAAGAAGATGTTCCTGATAAGTATAAGAAGGGTAATCTAGGTGTTTTGACTCTGTTACAGTGGGCGAGTTTGATTTTGATAATCGCAGCATTGATTTGCACTTTGGCAATTCGTAACTGGAGGAGAAAGAAACTATGGAAGCTTGAACTATGGAAATGGGAGGTTATGATTCTTGTTCTGATATGTGGAAGGTTGGTTTCTGGCTGGGGGATTCGGATAATTGTCTTCTTCATTGAAAGAAACTTTCTACTGCGTAAGAGGGTTCTATACTTTGTTTATGGAATCAGAAAGGCAGTCCAGAATTGTCTTTGGTTGGGTCTAGTTTTAATTGCTTGGAACTTCCTGTTTGATGACAAAGTTCAAAGAGAGGTAAAGAGCAATGCCTTAGAATATGTGACCAAAGTATTGGTATGTCTTCTTGTAAGCACTTTGGTTTGGCTAGTAAAAACGCTAATGGTGAAGGTCTTGGCCTCTTTTTTCCATGTGAGTACATATTTTGATAGGATTCAAGCTGCATTGTTTGACCAATATGTAATTGGGACACTGTTGGGGCCTCCATTGATGGAGATTTCAAAGAATGAGGAAGAAGAAGAGAGGGTTGCAGAAGAGGTTATAAAGTTAGAGAATGCAGGGGCTACCATCCCTCCTGATTTAAAGGCAACAGCTCAAAAGGGTGGGAGGGTGATAGGGGAGGGTATAACAATTGATCACTTGCATAAGCTTAGTCCTAAGAATGTGTCTGCCTGGAATATGAAGAGGTTGATGAAAATCATTAGACATGTGACTCTTTCAACTTTGGATGAACAAATCAAAGATTCAATAACTCATGAGAACGAATCAACCACACAGATCAAGAGTGGATATGAGGCAAAAGTTGCTGCTAAGAAGATTTTTCTGAACGTGGCTAGGCATGGTTCTAAATATATCTACGTAGAGGACTTGAAGCGTTTCATGGACGAAGATAAGGCTTCAAAAACCATGGGACTGTTTGAAGAAGCACGTGAGAGTAGGAAAATAAGCAAATCGTCATTGAAAAACTGGGTGATTTATGCCTCTAGGGAACGAACGGCTCTAGCTTCGACATTAGACGATTCCAAAACAGCTGTGAAAAAACTTCACCGCATGGTGAACATTTTAATTTCTGTCATTATTCTGGTTATTTGGCTATTGATTCTTGGTATAGCCACTAGCAAATTTCTCCTATTCGCGACCTCTCAACTTGTCCTTGTCGCATTTGTATTTGGAAATACTTGCAAGACTGTTTTTGAATCAATCATCTTCTTATTTGTAATGCATCCATTTGATGTTGGAAACCTATGCGAAATCAATGGTGTGCAGATGATTGTAAAAGAAATGAACATTTTGACGACCATTTTTCTAAGATATGACAACCAGAAGATCATAATTCCGAACAGTCTTCTCGCGACAATGGCTATCCACAACTTCTATCGTAGTCCTGACATGGGAGATGCTGTAGAATTCTGTCTTCACATATGTACTCCGCCTGAGAAAATTGCTATTATGAGACAAAGAATTATAAGTTACATTGAGGGCAAGAAAAAGCATTGGTGTCCTGCGCCAAGGATTTTCCTCAAGGATGTAGAAGAGTTAAACAGAATCAGAATAGCAATATGTCTTACTCATAGAATGAACCATCAAGACATGGGCAAGAGGTGGACTAGGAGAGCTCTTTTGGTCGAAGAACTCGTTAAAATTTTCCAAGAGATCGACTTGCAATACCGTCTCTCAGGGGGCTAG 2322 41.43 MSGNASLRGMKLVNTSGKIWQESSNDFWNDSDNRLNNGEVTNGNGGGGRSEDFELRQQRKDVEDPPSKLIGQLLHKQKGSGEISLDMDMEMLELPQDKTLLPMVADSPMRRRHRDSLPVDEEHRGKQPQQRDLRAHGSNGEDDGGAEVLRCTSNSSFGRDVSFQRKSGQVRRGLLSKAIDEEDDDPFLEEDVPDKYKKGNLGVLTLLQWASLILIIAALICTLAIRNWRRKKLWKLELWKWEVMILVLICGRLVSGWGIRIIVFFIERNFLLRKRVLYFVYGIRKAVQNCLWLGLVLIAWNFLFDDKVQREVKSNALEYVTKVLVCLLVSTLVWLVKTLMVKVLASFFHVSTYFDRIQAALFDQYVIGTLLGPPLMEISKNEEEEERVAEEVIKLENAGATIPPDLKATAQKGGRVIGEGITIDHLHKLSPKNVSAWNMKRLMKIIRHVTLSTLDEQIKDSITHENESTTQIKSGYEAKVAAKKIFLNVARHGSKYIYVEDLKRFMDEDKASKTMGLFEEARESRKISKSSLKNWVIYASRERTALASTLDDSKTAVKKLHRMVNILISVIILVIWLLILGIATSKFLLFATSQLVLVAFVFGNTCKTVFESIIFLFVMHPFDVGNLCEINGVQMIVKEMNILTTIFLRYDNQKIIIPNSLLATMAIHNFYRSPDMGDAVEFCLHICTPPEKIAIMRQRIISYIEGKKKHWCPAPRIFLKDVEELNRIRIAICLTHRMNHQDMGKRWTRRALLVEELVKIFQEIDLQYRLSGG 773
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 11138221 11141899 + Lsi10G008120.1 Lsi10g00812 672369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00812 773 SUPERFAMILY Sm-like ribonucleoproteins 611 670 IPR010920 -
Lsi10g00812 773 MobiDBLite consensus disorder prediction 22 44 - -
Lsi10g00812 773 Coils Coil 378 398 - -
Lsi10g00812 773 Gene3D - 621 670 IPR023408 -
Lsi10g00812 773 MobiDBLite consensus disorder prediction 52 66 - -
Lsi10g00812 773 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 139 409 - -
Lsi10g00812 773 MobiDBLite consensus disorder prediction 100 149 - -
Lsi10g00812 773 MobiDBLite consensus disorder prediction 22 75 - -
Lsi10g00812 773 MobiDBLite consensus disorder prediction 107 143 - -
Lsi10g00812 773 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 139 409 IPR016688 -
Lsi10g00812 773 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 419 770 IPR016688 -
Lsi10g00812 773 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 419 770 - -
Lsi10g00812 773 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 14 105 IPR016688 -
Lsi10g00812 773 Pfam Mechanosensitive ion channel 563 763 IPR006685 GO:0016020|GO:0055085
Lsi10g00812 773 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 14 105 - -
Lsi10g00812 773 PIRSF Memb_At2g17000 5 773 IPR016688 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi10g00812 Lsi11g01224 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi10g00812 Lsi-Chr10:11138221 Lsi11g01224 Lsi-Chr11:20834099 0 dispersed
Lsi10g00810 Lsi-Chr10:11068664 Lsi10g00812 Lsi-Chr10:11138221 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00812 K22048 - csv:101210264 1192.95