Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00822 ATGGCGCTCAGGCTGCCCACACAGCTCGCGACACCTGGCAACCTCCACCGCCACGCCTTCTCCTCCCGCCGCTCCTTTGCGGCCTCCGACGCTCTCTTCTCTACGTTTCCTTCCTTCGCTTCATCTTCCTCCGGGAGATCTTGTTTGCTACCGGTAGTCAGATGTACGGCTCAGCAGACTGGACCTGTGAATCTGGCGCCGGGGACACCGGTTAGGCCGACTAGCATTCTGGTGGTTGGTGCCACTGGAACCCTTGGTAGGCAGATCGTGAGGCGCGCGTTGGACGAAGGCTACGAGGTTCGTTGTCTTGTTAGGCCTCGACCGGCTCCTGCTGATTTTCTTCGCGATTGGGGCGCCATAGTCGTCAATGTGTTACTGACTAATGAGGCTGGAGCATTTTTATACGTATGGCAGGCAGATTTAAGTAAACCAGAAACTATCCCTGCAACATTGGTTGGGATTCACACTATCATAGATTGTGCTACAGGACGCCCGGAAGAGCCCATTAAGACGGTAGATTGGGAAGGTAAAGTTGCTCTGATACAATGTGCCAAGGCTATGGGAATCCAGAAGTATATTTTCTTCTCCATCCATAACTGTGACAAGCACCCTGAAGTTCCACTTATGGAGATCAAGTACTGTACTGAGAAGTTTCTCAAGGACGCAGGCTTAAATCACATCATTATTCGGCTATGTGGTTTCATGCAAGGTCTCATAGGGCAGTATGCAGTACCTATATTAGAAGAGAAATCTGTTTGGGGAACAGATGCTCCGACAAGAATTGCCTACATGGACACCCAGGATATAGCCAGGTTGACATTTATTGCATTGCGTAATGAGAATATGAATGGGAAACTTCTTACATTTGCTGGCCCTCGTGCATGGACAACTCAAGAGGTCATAACATTATGTGAGAGGCTTGCTGGACAAGATGCAAATGTTACTACTGTCCCAGTTTCAGTGTTGAGATTCACTCGTCAATTGACAAGGTTTTTTGAGTGGACAAGTGATGTTGCTGATAGACTAGCATTTTCGGAGGTTCTTACAAGCGACACTGTTTTCTCTGTTCCAATGACAGAGACATACGATCTCCTTGGTGTAGATGCAAAAGATATAATAACTTTAGAGAAATACCTGCAGGATTACTTCACAAACATTTTGAAAAAATTGAAGGATCTCAAAGCACAATCAAAGCAATCTGACATTTTTATATGA 1215 46.67 MALRLPTQLATPGNLHRHAFSSRRSFAASDALFSTFPSFASSSSGRSCLLPVVRCTAQQTGPVNLAPGTPVRPTSILVVGATGTLGRQIVRRALDEGYEVRCLVRPRPAPADFLRDWGAIVVNVLLTNEAGAFLYVWQADLSKPETIPATLVGIHTIIDCATGRPEEPIKTVDWEGKVALIQCAKAMGIQKYIFFSIHNCDKHPEVPLMEIKYCTEKFLKDAGLNHIIIRLCGFMQGLIGQYAVPILEEKSVWGTDAPTRIAYMDTQDIARLTFIALRNENMNGKLLTFAGPRAWTTQEVITLCERLAGQDANVTTVPVSVLRFTRQLTRFFEWTSDVADRLAFSEVLTSDTVFSVPMTETYDLLGVDAKDIITLEKYLQDYFTNILKKLKDLKAQSKQSDIFI 404
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 11327352 11332090 + Lsi10G008220.1 Lsi10g00822 672379

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00822 404 CDD SDR_a5 76 293 - -
Lsi10g00822 404 PANTHER - 18 404 IPR044256 -
Lsi10g00822 404 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 76 360 IPR036291 -
Lsi10g00822 404 Gene3D - 75 364 - -
Lsi10g00822 404 Pfam NmrA-like family 76 312 IPR008030 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00822 - - - csv:101205662 714.531
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi10g00822 Lsi-Chr10:11327352 Lsi09g01896 Lsi-Chr9:27787846 1.57E-06 dispersed
Lsi10g00821 Lsi-Chr10:11322226 Lsi10g00822 Lsi-Chr10:11327352 2.01E-84 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g241 . . . . . . . Bma12g00864 . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi10g00822 . . . . . . . . . . . Sed05g3473 . . . . . . . . Bhi10g01234 Tan05g1067 Cmetu11g0438 . Hepe08g0332 . . . . . . . . . . . . Cme11g01219
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009131 1 1 1 2 1 1 2 1 1 1 0 1 2 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi10g00822 Lsi_Chr10 FPKM 8.848797 13.834215 16.61879 14.965329 23.194233 19.265831 14.033912 15.753409 15.447105 16.483677