Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00823 ATGGGTTGCGCTACTTCTAAGCTCGACGATCTCCCTGCGGTTTCGCTCTGTCGAGAGCGTTGCGATTTTCTTGACGAAGCCATTCGGTTTCGGCACGCGTTCGCACAGGCTCACACCGCTTATATTCTCTCTCTTCAAGGGGTTGGTAAATCTTTGCACAATTTTATTGAACCAGGTTATGTTTATTCTGACCCCTCTTCTTCGCCTAAGCTCAAGCTTCCTACTCAGAGAAAGGGCGACCCTGATCTTGAACCTTCTAATTCTCCTCTCCATCGTTTATCTCACTCCAATTCCGGTTCCCATCTCCAATTACACTCCGATTCCGACGATGATTCCAGTTCCCTTCACCATTCCGACCACTCTTCGCCTTTGCATCAGACCCACGACGATTATTTTGACTACCCAGATGGGAATCGCGGTGGTGGTTATGTGCAGATCAATTATATGAAGAACAAAGCGATGCCGTCGGTGGTGCATCAGCAGGTGCCTATTACTTCAGAGAGGGTTTATCATATGGGTGAATCTTCTTCTTCCTCTGGCTATTATCCTTATTCGAATAAGGATTCGAATAATGGGTATCCAAATTATGGTGGTGGGTATGGCGGTGGTTATGGCGGTGGGTATGCCGGTGGGTACGACGGTTCTTCACCGCCCCCTGCGTATGGGGGTATGTCGAATATGCTACCTCCGGCTTCTTCGTCAAAGCCGCCACCGCCGCCTCCTTCTCCGCCGAAAACCTCTACTTGGGATTACCTTAACTTCTTTGATACTCCAGCGGTGGCGAACTACTATGGCGGCTACACGCCGAGCAGGGATCCCAGGGAAGTGAGAGAGGAAGAGGGAATTCCCGAATTGGAAGATGTACGATATTACCAACCGGAGGTTGTGAAGAAGGTCCACGGTGGCCAGAGGTTCGCCGAGGACGACGGCGAGAAGCGCTCGAAGGCGATGGTGGACGACCAATTGAAGATTGTGAACAAGAACGTCGCCGCCTCGGCTTATCAGACGAAGCCGAGCGCTGCAGTTGATGATGCCGTGCAATATGAGTTTGGAGTTGTTGATATGAAGGTTGTGGATAAGGATAAAAAACTAGAGGACCATGGAAATGGAGCTCCTGCTATTGCTGCAACAATGAAAGGGGGAGGAGCTGGTTCAAGGGATATTTATGAGGTGGTTAGAGAAATTGAAGTTTTGTACAAGAAAGCCTCAGAGTTTGGAGATGAAATTGGCAAGATGTTGGAGATGGGGCAGCTTCCTCATCAGCGTAAACATGCATTCTTGGCTCGACCGCCCGTTACACGGAGGAGGGCGAAGTCCTCTGTGAAGGCTAGTGCTGCTGAAGTTGTTTTTGTTGAGGATATGGGAATGAGATCTGGAAATCTTTCATCTACCTTGAAAAAGTTGTATATGTGGGAGAAGAAACTTTATAATGAAGTGAAGGGAGAGGAAAAGATGCGGATGACCCACGACAGGAAGCGCCACCAGCTTAAACGTTTGCACGAGAGAGGTGCTGAGGCCCAGAAAATTGAGGCCACTCAAACTTCCATAAATACCTTGTCGACCAACTTAAAAATTGCGATTCAGGTTGTTGACAAGATTTCTGAGACAATAAATAAGATTAGGGATGAAGAGCTCTGGCCACAAGTGAATGAACTGATTCAAGGGTTAACCAGGATGTGGAAAGGTATGCTGGAATGCCATCATGCTCAGTTTCAAGCGATTAAAGAATCACGAGGTTTAGGTCATATTAGATCTGGTGGAAAGCCTAGTGATGTCGATCTTCGAGTGACTTTACAACTCGATCACGAGCTTATTAGCTGGACAACTAGTTTCTCGGGTTGGATAAGTGCCCAGAAAAATTTTGTGAGATCCTTGAATAATTGGCTTCTGAAATGTCTTCTGTATGAGCCTGAAGAAACAGCTGATGGAATCGTTCCTTTCTCACCTAGCAGGATTGGTGCACCACCCATTTTTGTAATCTGCAATCAGTGGTCACAAGGTTTGGACAGATTCTCTGAGAAGAAGGTAGTTGATTCTATGCACGTTTTCGCTAAGAGCGTGCTTCAAATATGGGAGCATGATAAGCAAGAAGTGCGTCAAACAATGATAACGAACAAGGATCTCGAAAGGAAAGTGAAAAAAATCGACAGAGACGACCAAAAGTTGCAAAAGAAGATTCAGGCATTAGACAAGAAACTGATTCTGGTAACTGGACATGTGGAAGGAGATGGCAATAGCAATAGCAGCAGCCTGCAGGCAGGTCTGCAGTCCATTTTCGAGGCCCTCGAGAGCTTTGCATCTGATTCCATGAAAGCATACGAAGAGCTTTTGCAACGAATTGCGGAAGAAATTGCCAAGGCAAGAGCAGCATGA 2373 46.9 MGCATSKLDDLPAVSLCRERCDFLDEAIRFRHAFAQAHTAYILSLQGVGKSLHNFIEPGYVYSDPSSSPKLKLPTQRKGDPDLEPSNSPLHRLSHSNSGSHLQLHSDSDDDSSSLHHSDHSSPLHQTHDDYFDYPDGNRGGGYVQINYMKNKAMPSVVHQQVPITSERVYHMGESSSSSGYYPYSNKDSNNGYPNYGGGYGGGYGGGYAGGYDGSSPPPAYGGMSNMLPPASSSKPPPPPPSPPKTSTWDYLNFFDTPAVANYYGGYTPSRDPREVREEEGIPELEDVRYYQPEVVKKVHGGQRFAEDDGEKRSKAMVDDQLKIVNKNVAASAYQTKPSAAVDDAVQYEFGVVDMKVVDKDKKLEDHGNGAPAIAATMKGGGAGSRDIYEVVREIEVLYKKASEFGDEIGKMLEMGQLPHQRKHAFLARPPVTRRRAKSSVKASAAEVVFVEDMGMRSGNLSSTLKKLYMWEKKLYNEVKGEEKMRMTHDRKRHQLKRLHERGAEAQKIEATQTSINTLSTNLKIAIQVVDKISETINKIRDEELWPQVNELIQGLTRMWKGMLECHHAQFQAIKESRGLGHIRSGGKPSDVDLRVTLQLDHELISWTTSFSGWISAQKNFVRSLNNWLLKCLLYEPEETADGIVPFSPSRIGAPPIFVICNQWSQGLDRFSEKKVVDSMHVFAKSVLQIWEHDKQEVRQTMITNKDLERKVKKIDRDDQKLQKKIQALDKKLILVTGHVEGDGNSNSSSLQAGLQSIFEALESFASDSMKAYEELLQRIAEEIAKARAA 790
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 11376759 11381037 + Lsi10G008230.1 Lsi10g00823 672380

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00823 790 MobiDBLite consensus disorder prediction 221 247 - -
Lsi10g00823 790 MobiDBLite consensus disorder prediction 89 103 - -
Lsi10g00823 790 Pfam Protein of unknown function (DUF632) 389 687 IPR006867 -
Lsi10g00823 790 MobiDBLite consensus disorder prediction 231 246 - -
Lsi10g00823 790 MobiDBLite consensus disorder prediction 104 135 - -
Lsi10g00823 790 MobiDBLite consensus disorder prediction 63 136 - -
Lsi10g00823 790 PANTHER RNA POLYMERASE SUBUNIT BETA, PUTATIVE (DUF630 AND DUF632)-RELATED 1 786 - -
Lsi10g00823 790 Coils Coil 705 732 - -
Lsi10g00823 790 Pfam Protein of unknown function (DUF630) 1 57 IPR006868 -
Lsi10g00823 790 Coils Coil 770 790 - -
Lsi10g00823 790 PANTHER UNCHARACTERIZED 1 786 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00823 - - - csv:101209035 1206.82
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi10g00823 Lsi-Chr10:11376759 Lsi11g01274 Lsi-Chr11:21307960 0 dispersed
Lsi10g00823 Lsi-Chr10:11376759 Lsi02g02785 Lsi-Chr2:34100079 3.32E-31 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g242 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi10g00823 . . . Blo04g00600 . . . . . . . Sed01g0639 . . . . . . . . Bhi10g01233 Tan05g1068 Cmetu11g1383 . Hepe08g0331 . . . . . . . . . . . . Cme11g01221
Vvi7g1184 . . . . . . . . . . . . . Car20g00947 . . Cpe16g00058 . . . . . . . . . . . . . . . . . . . . Chy11g00083 . Blo05g00548 . . . . . . . Sed05g3456 . Cmo20g01130 . . . . . . Bhi10g01774 Tan05g1619 Cmetu11g0134 . . . . Cla02g00093 Cam02g0098 Cec02g0099 Cco02g0091 Clacu02g0094 Cmu02g0089 Cre02g0431 Lsi10g00823 Csa02g01567 . Cme11g00197
Vvi7g1262 Blo04g00940 Blo16g00574 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi10g00823 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013043 0 1 0 0 0 1 2 1 1 1 0 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 1 0 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi10g00823 Lsi_Chr10 FPKM 19.553219 17.718468 27.853865 27.72263 30.747852 36.303928 31.606724 28.426464 30.265171 30.074732