Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00824 ATGGGGTGTTGTGAATCCACTTTTCTGACAGAAACCCATCCCGAAAAGCTTCAAACCCAGCAACCTGCACCTCCGTATGCTGCGGTGGAGCCGCCGCCGCCGCCGCCGCTGCCGCTTGCTGTTGGACCTGACCCGACGCCGCCCGGGGAAATGGTTTCTACTTTTTCCGAGTTTTCCTTCTCGGACCTTAAGGCTGCTACCGACAATTTCAACTCCAACTTCATAGTCTCAGAGAGCGGCGAGAAGGCTCCCAACATTGTGTATAAGGGCCGACTTCAAAACCGCAAGTGGATCGCTGTGAAGAAGTTTACGAAGGTGGCTTGGCCGGACGCCAAGCAATTTGTGGAAGAGGCTTCGGGAGTTGGGAAGCTACGGCATCCAAGGTTTGCGAATTTGATAGGTTATTGCTGCGATGGTGATGAGAGGCTGCTTGTTGCGGAGTACATGCCTAATGATACTCTTGCAAAGCATTTATTCCACTGGGAAAATCAAACCATTGAGTGGGCCATGCGGTTGAGAGTTGCTTACTATATTGCTGAAGCCTTGGAATATTGTACCACTAAAGGCCGTGCGTTGTACCATGACTTGAATGCTTATAGAGTTCTTTTTGATGAGGGTGGCGATCCACGTCTTTCATGTTTTGGATTGATGAAAAACAGTAGGGATGGTAAGAGTTACAGCACAAATCTGGCCTACACACCACCTGAGTATTTGAAGAATGGAAGGGTAACCCCTGAAAGTGTTATTTATAGCTTTGGTACTGTCCTCTTGGATCTTCTAAGTGGCAAGCATATCCCTCCAAGTCATGATAGTGGTGAATTGGGAATGAGATTTATCGGGGAAGTGATTCTAGTGCCAATAGACTTTGCTTTCCTTGATTCTTTAGATTTTCATTTGATTTCTCTGTTGTTTGGATATGGGCGAGTGCAGGCTCTTGATCTGATTCGAGGAAAGAATATCATTCTCTTAATGGATTCACATTTGGAAGGAAAATTTTCTACCGAGGACGCAACTGTGGTTGTTAATCTTGCTTCTCAATGTTTACAATATGAACCTAGGGACAGGCCTAACACAGAGGAACTTGTTTCAACTCTTGCTCCCTTGCAAACAAAACCAGATGTTCCCTCTTATGTCATGCTTGGTATGAAGAAGCAGGAGGATGCCCCAATACCCCCAGTAGCCCCAGTAGCCCCAGTAGCCCCAGTAACCCCACAACGTCCTTTATCGTCGATGGGTGAGGCCTGCTCGAGGATGGATCTCACTGCAATTCATCAAATCTTGGTTATGACGCACTACAGAGATGATGAAGGAACTAATGAGTTCATAGATGTAGGAACTATGATCTCCCCAACCGTGTTTGCTCGACGAAGCCTATGCTATTTGTTGTGCGATCAACCCGATGCTGCACTTCGGGATGCAATGCAAGCACAGTGTGTACACCCAGACTGGCCCACAGCCTTCTACATGCAATCGGTTGCCCTTGCAAAGCTGGATATGCAGAAAGACGCCATCGACATGTTGAACGAAGCAGCTGCATTAGAAGAGAAGAGGCAACGAGGTGGACGATGA 1569 47.42 MGCCESTFLTETHPEKLQTQQPAPPYAAVEPPPPPPLPLAVGPDPTPPGEMVSTFSEFSFSDLKAATDNFNSNFIVSESGEKAPNIVYKGRLQNRKWIAVKKFTKVAWPDAKQFVEEASGVGKLRHPRFANLIGYCCDGDERLLVAEYMPNDTLAKHLFHWENQTIEWAMRLRVAYYIAEALEYCTTKGRALYHDLNAYRVLFDEGGDPRLSCFGLMKNSRDGKSYSTNLAYTPPEYLKNGRVTPESVIYSFGTVLLDLLSGKHIPPSHDSGELGMRFIGEVILVPIDFAFLDSLDFHLISLLFGYGRVQALDLIRGKNIILLMDSHLEGKFSTEDATVVVNLASQCLQYEPRDRPNTEELVSTLAPLQTKPDVPSYVMLGMKKQEDAPIPPVAPVAPVAPVTPQRPLSSMGEACSRMDLTAIHQILVMTHYRDDEGTNEFIDVGTMISPTVFARRSLCYLLCDQPDAALRDAMQAQCVHPDWPTAFYMQSVALAKLDMQKDAIDMLNEAAALEEKRQRGGR 522
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 11440193 11446427 + Lsi10G008240.1 Lsi10g00824 672381

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00824 522 PANTHER INTERLEUKIN-1 RECEPTOR-ASSOCIATED KINASE 4 PROTEIN-RELATED 310 440 - -
Lsi10g00824 522 ProSiteProfiles Protein kinase domain profile. 73 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi10g00824 522 Gene3D Tetratricopeptide repeat domain 443 520 IPR011990 GO:0005515
Lsi10g00824 522 MobiDBLite consensus disorder prediction 25 45 - -
Lsi10g00824 522 Pfam Protein kinase domain 87 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi10g00824 522 SUPERFAMILY Protein kinase-like (PK-like) 48 374 IPR011009 -
Lsi10g00824 522 SUPERFAMILY TPR-like 450 515 IPR011990 GO:0005515
Lsi10g00824 522 MobiDBLite consensus disorder prediction 9 48 - -
Lsi10g00824 522 Gene3D Phosphorylase Kinase; domain 1 49 148 - -
Lsi10g00824 522 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 1 270 IPR045845 GO:0004672|GO:0009742
Lsi10g00824 522 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 441 522 IPR045845 GO:0004672|GO:0009742
Lsi10g00824 522 Coils Coil 496 516 - -
Lsi10g00824 522 Gene3D Transferase(Phosphotransferase) domain 1 150 381 - -
Lsi10g00824 522 PANTHER INTERLEUKIN-1 RECEPTOR-ASSOCIATED KINASE 4 PROTEIN-RELATED 1 270 - -
Lsi10g00824 522 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 310 440 IPR045845 GO:0004672|GO:0009742
Lsi10g00824 522 PANTHER INTERLEUKIN-1 RECEPTOR-ASSOCIATED KINASE 4 PROTEIN-RELATED 441 522 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00824 K14500 BSK; BR-signaling kinase [EC:2.7.11.1] - csv:101205895 839.721
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00803 Lsi-Chr8:16400279 Lsi10g00824 Lsi-Chr10:11440193 0 dispersed
Lsi10g00824 Lsi-Chr10:11440193 Lsi10g01406 Lsi-Chr10:18169842 5.23E-176 dispersed
Lsi10g00824 Lsi-Chr10:11440193 Lsi02g01628 Lsi-Chr2:22167212 1.15E-42 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g243 . . . . Bpe07g00697 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone3ag1227 . Lsi10g00824 . . . . . . . . . . . . . . . . . . . . Bhi10g01232 . . . . . . . . . . . . . . . . Cme11g01222
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000526 3 6 2 3 3 3 6 3 3 3 3 3 6 3 3 6 3 5 6 3 3 3 3 3 2 3 3 6 5 2 109
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83956 PF00069 Pkinase 2.50E-24 CL0016 Lsi PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi10g00824 Lsi_Chr10 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0