Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00825 ATGGGAGGCTCCTCCAATTACCATGCTCGTTCCAACAGCCTACCCACGAGGCCTCACCCCCTCGTGACGGAGTGCGACGAGCACCTATGCCGGCTGAAGGCGCTGGACTCGGGTCCATGGACGGCGTCGGGGATGGCGAAGAAGCTGGCGGGGCTGCAGGACTTGCAGGAATGCGTGAATAAGCTGCTGCTGTTGCGGCGAACGAGGGACGCCTTTGCCACGCAGCGCCGGGAGAAATGGGTCGATGAGGTGTTTGATGGATCGTTGAGATTGCTGGACTTGTGCAGTGCTTCTAAGGATGGTGTTATTCATACTAAGGAGTGTGTGAGGGAGTTGCAATCTTTGGTTAGGAGAAGATCCTCTTCTTGGTGTTGTGGAAATGGCGTTGCTAATCAGGTGGAGAAATATTTAGCCTCAAGAAAAGTAGTGAAAAGAGCCATCCAAAAGGCTTTAGCTAGCGTGAAGACTTATGGGGCAAAACCAAGTTTAATTTCCATTAAAGATGCTGAAACTGTGGCCTTAATAACTCTATTATTCGACGTAGAAGTTGCAAGTGTGAATGTTTTTGAAGCCCTCTTGAGCTATGTTTTGGGGAAGAAAGGAAAGTCCAAAGGTAGCGGTTGGACGCTAGTTTCAAAGCTAATGCGCTCTAAACGAGCGTTTTTAACTGAGGAGGGTGCAGAAGGAGAGACAAATGAGTTCGCCACCGTGGACGCAGCGGTCGACACAGTGGCGAGCAGATTAGCCTCCGATGGCACTGTTGTAGGCGGTGGCGGCCTAGAGAGCATGGGAGATCAGTTAGGGAAGTTGGAAGCATGTGTTCAAGATTTAGAAGGAGGATTAGATGGTTTGTTTAGGAGATTGATAAGAAATAGGGTTTCACTTTTGAATATTATCAATAACTAA 906 49.01 MGGSSNYHARSNSLPTRPHPLVTECDEHLCRLKALDSGPWTASGMAKKLAGLQDLQECVNKLLLLRRTRDAFATQRREKWVDEVFDGSLRLLDLCSASKDGVIHTKECVRELQSLVRRRSSSWCCGNGVANQVEKYLASRKVVKRAIQKALASVKTYGAKPSLISIKDAETVALITLLFDVEVASVNVFEALLSYVLGKKGKSKGSGWTLVSKLMRSKRAFLTEEGAEGETNEFATVDAAVDTVASRLASDGTVVGGGGLESMGDQLGKLEACVQDLEGGLDGLFRRLIRNRVSLLNIINN 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 11535514 11537267 + Lsi10G008250.1 Lsi10g00825 672382

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00825 301 PANTHER BPS1-LIKE PROTEIN 4 300 - -
Lsi10g00825 301 Pfam Protein BPS1 48 298 IPR004320 GO:0048364|GO:0048367
Lsi10g00825 301 PANTHER - 4 300 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00825 - - - csv:101209279 526.939
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi10g00825 Lsi11g01264 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g01072 Lsi-Chr7:16077576 Lsi10g00825 Lsi-Chr10:11535514 2.66E-37 dispersed
Lsi10g00825 Lsi-Chr10:11535514 Lsi11g01271 Lsi-Chr11:21288361 1.39E-70 dispersed
Lsi10g00825 Lsi-Chr10:11535514 Lsi11g01261 Lsi-Chr11:21250340 8.33E-89 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g245 . Blo15g00400 . . . . . Bma12g00902 Cmo19g00800 . . . . . . . . Bhi05g01616 . . . . . . Cla02g00371 . . . Clacu02g0370 Cmu02g0367 Cre02g0700 . . . . Lsi10g00825 Csa07g00161 . Cme01g01175 . . . . . . . . . . . Cma11g01347 Cma19g00784 . . . . . . . . . . . . . . . . . . Lsi11g01264 . Chy01g00628 Cme11g01223
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012109 0 1 0 0 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 0 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi10g00825 Lsi_Chr10 FPKM 2.495017 3.624535 1.675407 1.895383 8.865706 7.645656 9.696923 3.276348 2.902153 3.205189