Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00826 ATGGAGAGACAATATGGATCAAATAGTTTGAGTCCATGTTCCTCCCTTTCTAATGGGGTTCGACAAGAAACTGAAGAAGATGTCACTAAAGATTTGAGGGAAGCCAATGAATTAATCGAAGCCATTGGAGCTTTTTCCGGGTTTCGAAAGACGCAATCCAAGGAGTGTTTGAATTTGGTTAGGAGGTTGAAGATGCTTGTGCCTTTGTTGGAGGAGATTAGGGACCTTCATGATATGGTTCCTGCTGAGACTTTGAGTTGCCATATTGCTCATTTGAAAGAGGCTCTTGTTTTGGCCAAAAGGTTACTGAAGAATTGCCACAATGGGAGTAAGATTTACCTGGCATTTGAGAATGAGGCTGTGATGGCAAGGTTTCATGGTGTTTATGACAAATTGAAGGAGGCCCTTGATGGGATACCTTATGATGAGCTTGGAGTCTCAGTTGAATTGAAAGAGCAAGTTGAGCTCATGTCGACCCAACTCAAAAGAGCAAAGTGTAGGAAAGATACACAAGACATGGAACTAGCAATGGACATGATGGTTGTATTTTCCAAAAACGACGAAAGAAATGCTGACCCTGTTATACTTGAAAGATTGGCAAACAAATTGGAACTACGTAAAATTGCAGATTTGGAATCAGAAACCGTAGCTGTACAAAAATTAGTTAGACGTAGAGGTGTGCCGAATTCTGAAAGTCTCCAGCAAATTACAGACCTTCTATGCAAGTTTAAACAAATTGCAGGTATGGACAATAATCCTGCTCCTGATGGTCCTGTTGCATCGAAACGGCTGCAACGGCTGCAACGGTGTCAGTCTACAATAATCCCTCATGAATTCCTCTGCCCCATTACCTTAGAAATCATGACAGATCCTGTCATTGTGGCTACTGGGCAGACTTATGACCGAGAAAGTATACAGAAATGGTTGAATTCTAACCATCGCACGTGCCCGAAAACTGGACAAACATTAGTGCATTTGTCACTAGCTCCAAATTATGCCCTCAAGAACCTTATTTTGCAGTGGTGTGAAAAGTATAACTATGAATTGCCAAAGAAGGAAGTAGTTGCTGGAATGGGAGACACTCCACCCGATCTTGCTCAAGAAATCTCCTCTTTAGTCCACAATCTATCATCGAGTCAGTTGGATGTCCAGAGAGAGGCTATCATCAAGATTCGTGTCCTTTCCAAGGAGAACCCTGAGAACAGAGTTTGGATTGCGAATAGCGGAGTCATCCCTCCGTTGGTTAAGCTTCTCTCCTACCCAGATCTCAATTTCCAAGAGCACACGGTGACCGCTCTATTGAACTTGTCTATTGACGATGCGAATAAAAGACTCATTGCGAGAGAAGGAGCCATTCCTGCTATCATAGAAATCCTGCAGCATGGAACAGAGGAGGCTAAGGAGAATTCTGCTGCTGCCCTGTTTAGCTTGTCAATGTTAGATGAAAATAAGGTTCTGATTGGATCTCTAAAGGGAATTCCGCCATTAGTATTACTTCTTCGAGACGGTACAATCCGAGGGAAGAAGGATGCTGCCACTGCACTCTTTAACCTGTCACTGAATCAAGCAAACAAGTCCCGAGCCATCAAAGCTGGTATCATACCGCCCCTTCTCTCTTTGCTCGAGGATAAGAATTTAGGAATGGTTGATGAAGCTTTATCAATCTTGTTACTCCTTGCATCACATCCCGAGGGACGGTCCGAGATCGGAAATAACTCTTTCATCGAAATTCTAGTCAACATCATAACAGACGGGACTCCGAAGAACAAGGAATGTGCTACATCGTTACTTCTCGAGCTGGGACGAAACAATTCGCCTTCCATTTTGGTTGCACTGCAATTTGGTGTATATGAACATTTGGTAGAGCTCACTAGATGTGGGACAAGTAGAGCCCAGAGAAAAGCAACCTCACTTTTGCAGTATATGAGCAAGTGTGAACACATTCCCTGA 1950 43.23 MERQYGSNSLSPCSSLSNGVRQETEEDVTKDLREANELIEAIGAFSGFRKTQSKECLNLVRRLKMLVPLLEEIRDLHDMVPAETLSCHIAHLKEALVLAKRLLKNCHNGSKIYLAFENEAVMARFHGVYDKLKEALDGIPYDELGVSVELKEQVELMSTQLKRAKCRKDTQDMELAMDMMVVFSKNDERNADPVILERLANKLELRKIADLESETVAVQKLVRRRGVPNSESLQQITDLLCKFKQIAGMDNNPAPDGPVASKRLQRLQRCQSTIIPHEFLCPITLEIMTDPVIVATGQTYDRESIQKWLNSNHRTCPKTGQTLVHLSLAPNYALKNLILQWCEKYNYELPKKEVVAGMGDTPPDLAQEISSLVHNLSSSQLDVQREAIIKIRVLSKENPENRVWIANSGVIPPLVKLLSYPDLNFQEHTVTALLNLSIDDANKRLIAREGAIPAIIEILQHGTEEAKENSAAALFSLSMLDENKVLIGSLKGIPPLVLLLRDGTIRGKKDAATALFNLSLNQANKSRAIKAGIIPPLLSLLEDKNLGMVDEALSILLLLASHPEGRSEIGNNSFIEILVNIITDGTPKNKECATSLLLELGRNNSPSILVALQFGVYEHLVELTRCGTSRAQRKATSLLQYMSKCEHIP 649
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 11573842 11577884 + Lsi10G008260.1 Lsi10g00826 672383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00826 649 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 491 533 IPR000225 GO:0005515
Lsi10g00826 649 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 409 451 IPR000225 GO:0005515
Lsi10g00826 649 Pfam Armadillo/beta-catenin-like repeat 439 478 IPR000225 GO:0005515
Lsi10g00826 649 Pfam Armadillo/beta-catenin-like repeat 521 557 IPR000225 GO:0005515
Lsi10g00826 649 Pfam Armadillo/beta-catenin-like repeat 398 437 IPR000225 GO:0005515
Lsi10g00826 649 Pfam Armadillo/beta-catenin-like repeat 481 519 IPR000225 GO:0005515
Lsi10g00826 649 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 275 349 IPR013083 -
Lsi10g00826 649 SMART arm_5 604 644 IPR000225 GO:0005515
Lsi10g00826 649 SMART arm_5 521 561 IPR000225 GO:0005515
Lsi10g00826 649 SMART arm_5 398 438 IPR000225 GO:0005515
Lsi10g00826 649 SMART arm_5 562 602 IPR000225 GO:0005515
Lsi10g00826 649 SMART arm_5 480 520 IPR000225 GO:0005515
Lsi10g00826 649 SMART arm_5 439 479 IPR000225 GO:0005515
Lsi10g00826 649 Pfam U-box domain 275 344 IPR003613 GO:0004842|GO:0016567
Lsi10g00826 649 Coils Coil 147 167 - -
Lsi10g00826 649 CDD RING-Ubox_PUB 279 321 IPR045210 -
Lsi10g00826 649 ProSiteProfiles U-box domain profile. 274 348 IPR003613 GO:0004842|GO:0016567
Lsi10g00826 649 SUPERFAMILY ARM repeat 369 643 IPR016024 -
Lsi10g00826 649 Gene3D - 31 140 IPR036537 GO:0007166
Lsi10g00826 649 PANTHER U BOX DOMAIN-CONTAINING 28 646 - -
Lsi10g00826 649 SUPERFAMILY RING/U-box 275 349 - -
Lsi10g00826 649 Gene3D - 361 509 IPR011989 -
Lsi10g00826 649 MobiDBLite consensus disorder prediction 1 27 - -
Lsi10g00826 649 MobiDBLite consensus disorder prediction 1 22 - -
Lsi10g00826 649 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 28 646 - -
Lsi10g00826 649 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 450 492 IPR000225 GO:0005515
Lsi10g00826 649 Gene3D - 510 647 IPR011989 -
Lsi10g00826 649 SMART Ubox_2 278 341 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00257 Lsi-Chr7:2817688 Lsi10g00826 Lsi-Chr10:11573842 7.48E-27 dispersed
Lsi10g00826 Lsi-Chr10:11573842 Lsi10g01368 Lsi-Chr10:17834008 2.24E-153 dispersed
Lsi10g00826 Lsi-Chr10:11573842 Lsi02g01363 Lsi-Chr2:18368167 1.13E-165 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00826 - - csv:101214151 1173.69