Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi10g00826 | ATGGAGAGACAATATGGATCAAATAGTTTGAGTCCATGTTCCTCCCTTTCTAATGGGGTTCGACAAGAAACTGAAGAAGATGTCACTAAAGATTTGAGGGAAGCCAATGAATTAATCGAAGCCATTGGAGCTTTTTCCGGGTTTCGAAAGACGCAATCCAAGGAGTGTTTGAATTTGGTTAGGAGGTTGAAGATGCTTGTGCCTTTGTTGGAGGAGATTAGGGACCTTCATGATATGGTTCCTGCTGAGACTTTGAGTTGCCATATTGCTCATTTGAAAGAGGCTCTTGTTTTGGCCAAAAGGTTACTGAAGAATTGCCACAATGGGAGTAAGATTTACCTGGCATTTGAGAATGAGGCTGTGATGGCAAGGTTTCATGGTGTTTATGACAAATTGAAGGAGGCCCTTGATGGGATACCTTATGATGAGCTTGGAGTCTCAGTTGAATTGAAAGAGCAAGTTGAGCTCATGTCGACCCAACTCAAAAGAGCAAAGTGTAGGAAAGATACACAAGACATGGAACTAGCAATGGACATGATGGTTGTATTTTCCAAAAACGACGAAAGAAATGCTGACCCTGTTATACTTGAAAGATTGGCAAACAAATTGGAACTACGTAAAATTGCAGATTTGGAATCAGAAACCGTAGCTGTACAAAAATTAGTTAGACGTAGAGGTGTGCCGAATTCTGAAAGTCTCCAGCAAATTACAGACCTTCTATGCAAGTTTAAACAAATTGCAGGTATGGACAATAATCCTGCTCCTGATGGTCCTGTTGCATCGAAACGGCTGCAACGGCTGCAACGGTGTCAGTCTACAATAATCCCTCATGAATTCCTCTGCCCCATTACCTTAGAAATCATGACAGATCCTGTCATTGTGGCTACTGGGCAGACTTATGACCGAGAAAGTATACAGAAATGGTTGAATTCTAACCATCGCACGTGCCCGAAAACTGGACAAACATTAGTGCATTTGTCACTAGCTCCAAATTATGCCCTCAAGAACCTTATTTTGCAGTGGTGTGAAAAGTATAACTATGAATTGCCAAAGAAGGAAGTAGTTGCTGGAATGGGAGACACTCCACCCGATCTTGCTCAAGAAATCTCCTCTTTAGTCCACAATCTATCATCGAGTCAGTTGGATGTCCAGAGAGAGGCTATCATCAAGATTCGTGTCCTTTCCAAGGAGAACCCTGAGAACAGAGTTTGGATTGCGAATAGCGGAGTCATCCCTCCGTTGGTTAAGCTTCTCTCCTACCCAGATCTCAATTTCCAAGAGCACACGGTGACCGCTCTATTGAACTTGTCTATTGACGATGCGAATAAAAGACTCATTGCGAGAGAAGGAGCCATTCCTGCTATCATAGAAATCCTGCAGCATGGAACAGAGGAGGCTAAGGAGAATTCTGCTGCTGCCCTGTTTAGCTTGTCAATGTTAGATGAAAATAAGGTTCTGATTGGATCTCTAAAGGGAATTCCGCCATTAGTATTACTTCTTCGAGACGGTACAATCCGAGGGAAGAAGGATGCTGCCACTGCACTCTTTAACCTGTCACTGAATCAAGCAAACAAGTCCCGAGCCATCAAAGCTGGTATCATACCGCCCCTTCTCTCTTTGCTCGAGGATAAGAATTTAGGAATGGTTGATGAAGCTTTATCAATCTTGTTACTCCTTGCATCACATCCCGAGGGACGGTCCGAGATCGGAAATAACTCTTTCATCGAAATTCTAGTCAACATCATAACAGACGGGACTCCGAAGAACAAGGAATGTGCTACATCGTTACTTCTCGAGCTGGGACGAAACAATTCGCCTTCCATTTTGGTTGCACTGCAATTTGGTGTATATGAACATTTGGTAGAGCTCACTAGATGTGGGACAAGTAGAGCCCAGAGAAAAGCAACCTCACTTTTGCAGTATATGAGCAAGTGTGAACACATTCCCTGA | 1950 | 43.23 | MERQYGSNSLSPCSSLSNGVRQETEEDVTKDLREANELIEAIGAFSGFRKTQSKECLNLVRRLKMLVPLLEEIRDLHDMVPAETLSCHIAHLKEALVLAKRLLKNCHNGSKIYLAFENEAVMARFHGVYDKLKEALDGIPYDELGVSVELKEQVELMSTQLKRAKCRKDTQDMELAMDMMVVFSKNDERNADPVILERLANKLELRKIADLESETVAVQKLVRRRGVPNSESLQQITDLLCKFKQIAGMDNNPAPDGPVASKRLQRLQRCQSTIIPHEFLCPITLEIMTDPVIVATGQTYDRESIQKWLNSNHRTCPKTGQTLVHLSLAPNYALKNLILQWCEKYNYELPKKEVVAGMGDTPPDLAQEISSLVHNLSSSQLDVQREAIIKIRVLSKENPENRVWIANSGVIPPLVKLLSYPDLNFQEHTVTALLNLSIDDANKRLIAREGAIPAIIEILQHGTEEAKENSAAALFSLSMLDENKVLIGSLKGIPPLVLLLRDGTIRGKKDAATALFNLSLNQANKSRAIKAGIIPPLLSLLEDKNLGMVDEALSILLLLASHPEGRSEIGNNSFIEILVNIITDGTPKNKECATSLLLELGRNNSPSILVALQFGVYEHLVELTRCGTSRAQRKATSLLQYMSKCEHIP | 649 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 11573842 | 11577884 | + | Lsi10G008260.1 | Lsi10g00826 | 672383 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi10g00826 | 649 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 491 | 533 | IPR000225 | GO:0005515 | |
Lsi10g00826 | 649 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 409 | 451 | IPR000225 | GO:0005515 | |
Lsi10g00826 | 649 | Pfam | Armadillo/beta-catenin-like repeat | 439 | 478 | IPR000225 | GO:0005515 | |
Lsi10g00826 | 649 | Pfam | Armadillo/beta-catenin-like repeat | 521 | 557 | IPR000225 | GO:0005515 | |
Lsi10g00826 | 649 | Pfam | Armadillo/beta-catenin-like repeat | 398 | 437 | IPR000225 | GO:0005515 | |
Lsi10g00826 | 649 | Pfam | Armadillo/beta-catenin-like repeat | 481 | 519 | IPR000225 | GO:0005515 | |
Lsi10g00826 | 649 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 275 | 349 | IPR013083 | - | |
Lsi10g00826 | 649 | SMART | arm_5 | 604 | 644 | IPR000225 | GO:0005515 | |
Lsi10g00826 | 649 | SMART | arm_5 | 521 | 561 | IPR000225 | GO:0005515 | |
Lsi10g00826 | 649 | SMART | arm_5 | 398 | 438 | IPR000225 | GO:0005515 | |
Lsi10g00826 | 649 | SMART | arm_5 | 562 | 602 | IPR000225 | GO:0005515 | |
Lsi10g00826 | 649 | SMART | arm_5 | 480 | 520 | IPR000225 | GO:0005515 | |
Lsi10g00826 | 649 | SMART | arm_5 | 439 | 479 | IPR000225 | GO:0005515 | |
Lsi10g00826 | 649 | Pfam | U-box domain | 275 | 344 | IPR003613 | GO:0004842|GO:0016567 | |
Lsi10g00826 | 649 | Coils | Coil | 147 | 167 | - | - | |
Lsi10g00826 | 649 | CDD | RING-Ubox_PUB | 279 | 321 | IPR045210 | - | |
Lsi10g00826 | 649 | ProSiteProfiles | U-box domain profile. | 274 | 348 | IPR003613 | GO:0004842|GO:0016567 | |
Lsi10g00826 | 649 | SUPERFAMILY | ARM repeat | 369 | 643 | IPR016024 | - | |
Lsi10g00826 | 649 | Gene3D | - | 31 | 140 | IPR036537 | GO:0007166 | |
Lsi10g00826 | 649 | PANTHER | U BOX DOMAIN-CONTAINING | 28 | 646 | - | - | |
Lsi10g00826 | 649 | SUPERFAMILY | RING/U-box | 275 | 349 | - | - | |
Lsi10g00826 | 649 | Gene3D | - | 361 | 509 | IPR011989 | - | |
Lsi10g00826 | 649 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
Lsi10g00826 | 649 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Lsi10g00826 | 649 | PANTHER | RING-TYPE E3 UBIQUITIN TRANSFERASE | 28 | 646 | - | - | |
Lsi10g00826 | 649 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 450 | 492 | IPR000225 | GO:0005515 | |
Lsi10g00826 | 649 | Gene3D | - | 510 | 647 | IPR011989 | - | |
Lsi10g00826 | 649 | SMART | Ubox_2 | 278 | 341 | IPR003613 | GO:0004842|GO:0016567 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi07g00257 | Lsi-Chr7:2817688 | Lsi10g00826 | Lsi-Chr10:11573842 | 7.48E-27 | dispersed | |
Lsi10g00826 | Lsi-Chr10:11573842 | Lsi10g01368 | Lsi-Chr10:17834008 | 2.24E-153 | dispersed | |
Lsi10g00826 | Lsi-Chr10:11573842 | Lsi02g01363 | Lsi-Chr2:18368167 | 1.13E-165 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi10g00826 | - | - | csv:101214151 | 1173.69 |