Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00826 ATGGAGAGACAATATGGATCAAATAGTTTGAGTCCATGTTCCTCCCTTTCTAATGGGGTTCGACAAGAAACTGAAGAAGATGTCACTAAAGATTTGAGGGAAGCCAATGAATTAATCGAAGCCATTGGAGCTTTTTCCGGGTTTCGAAAGACGCAATCCAAGGAGTGTTTGAATTTGGTTAGGAGGTTGAAGATGCTTGTGCCTTTGTTGGAGGAGATTAGGGACCTTCATGATATGGTTCCTGCTGAGACTTTGAGTTGCCATATTGCTCATTTGAAAGAGGCTCTTGTTTTGGCCAAAAGGTTACTGAAGAATTGCCACAATGGGAGTAAGATTTACCTGGCATTTGAGAATGAGGCTGTGATGGCAAGGTTTCATGGTGTTTATGACAAATTGAAGGAGGCCCTTGATGGGATACCTTATGATGAGCTTGGAGTCTCAGTTGAATTGAAAGAGCAAGTTGAGCTCATGTCGACCCAACTCAAAAGAGCAAAGTGTAGGAAAGATACACAAGACATGGAACTAGCAATGGACATGATGGTTGTATTTTCCAAAAACGACGAAAGAAATGCTGACCCTGTTATACTTGAAAGATTGGCAAACAAATTGGAACTACGTAAAATTGCAGATTTGGAATCAGAAACCGTAGCTGTACAAAAATTAGTTAGACGTAGAGGTGTGCCGAATTCTGAAAGTCTCCAGCAAATTACAGACCTTCTATGCAAGTTTAAACAAATTGCAGGTATGGACAATAATCCTGCTCCTGATGGTCCTGTTGCATCGAAACGGCTGCAACGGCTGCAACGGTGTCAGTCTACAATAATCCCTCATGAATTCCTCTGCCCCATTACCTTAGAAATCATGACAGATCCTGTCATTGTGGCTACTGGGCAGACTTATGACCGAGAAAGTATACAGAAATGGTTGAATTCTAACCATCGCACGTGCCCGAAAACTGGACAAACATTAGTGCATTTGTCACTAGCTCCAAATTATGCCCTCAAGAACCTTATTTTGCAGTGGTGTGAAAAGTATAACTATGAATTGCCAAAGAAGGAAGTAGTTGCTGGAATGGGAGACACTCCACCCGATCTTGCTCAAGAAATCTCCTCTTTAGTCCACAATCTATCATCGAGTCAGTTGGATGTCCAGAGAGAGGCTATCATCAAGATTCGTGTCCTTTCCAAGGAGAACCCTGAGAACAGAGTTTGGATTGCGAATAGCGGAGTCATCCCTCCGTTGGTTAAGCTTCTCTCCTACCCAGATCTCAATTTCCAAGAGCACACGGTGACCGCTCTATTGAACTTGTCTATTGACGATGCGAATAAAAGACTCATTGCGAGAGAAGGAGCCATTCCTGCTATCATAGAAATCCTGCAGCATGGAACAGAGGAGGCTAAGGAGAATTCTGCTGCTGCCCTGTTTAGCTTGTCAATGTTAGATGAAAATAAGGTTCTGATTGGATCTCTAAAGGGAATTCCGCCATTAGTATTACTTCTTCGAGACGGTACAATCCGAGGGAAGAAGGATGCTGCCACTGCACTCTTTAACCTGTCACTGAATCAAGCAAACAAGTCCCGAGCCATCAAAGCTGGTATCATACCGCCCCTTCTCTCTTTGCTCGAGGATAAGAATTTAGGAATGGTTGATGAAGCTTTATCAATCTTGTTACTCCTTGCATCACATCCCGAGGGACGGTCCGAGATCGGAAATAACTCTTTCATCGAAATTCTAGTCAACATCATAACAGACGGGACTCCGAAGAACAAGGAATGTGCTACATCGTTACTTCTCGAGCTGGGACGAAACAATTCGCCTTCCATTTTGGTTGCACTGCAATTTGGTGTATATGAACATTTGGTAGAGCTCACTAGATGTGGGACAAGTAGAGCCCAGAGAAAAGCAACCTCACTTTTGCAGTATATGAGCAAGTGTGAACACATTCCCTGA 1950 43.23 MERQYGSNSLSPCSSLSNGVRQETEEDVTKDLREANELIEAIGAFSGFRKTQSKECLNLVRRLKMLVPLLEEIRDLHDMVPAETLSCHIAHLKEALVLAKRLLKNCHNGSKIYLAFENEAVMARFHGVYDKLKEALDGIPYDELGVSVELKEQVELMSTQLKRAKCRKDTQDMELAMDMMVVFSKNDERNADPVILERLANKLELRKIADLESETVAVQKLVRRRGVPNSESLQQITDLLCKFKQIAGMDNNPAPDGPVASKRLQRLQRCQSTIIPHEFLCPITLEIMTDPVIVATGQTYDRESIQKWLNSNHRTCPKTGQTLVHLSLAPNYALKNLILQWCEKYNYELPKKEVVAGMGDTPPDLAQEISSLVHNLSSSQLDVQREAIIKIRVLSKENPENRVWIANSGVIPPLVKLLSYPDLNFQEHTVTALLNLSIDDANKRLIAREGAIPAIIEILQHGTEEAKENSAAALFSLSMLDENKVLIGSLKGIPPLVLLLRDGTIRGKKDAATALFNLSLNQANKSRAIKAGIIPPLLSLLEDKNLGMVDEALSILLLLASHPEGRSEIGNNSFIEILVNIITDGTPKNKECATSLLLELGRNNSPSILVALQFGVYEHLVELTRCGTSRAQRKATSLLQYMSKCEHIP 649
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 11573842 11577884 + Lsi10G008260.1 Lsi10g00826 672383

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00826 649 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 491 533 IPR000225 GO:0005515
Lsi10g00826 649 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 409 451 IPR000225 GO:0005515
Lsi10g00826 649 Pfam Armadillo/beta-catenin-like repeat 439 478 IPR000225 GO:0005515
Lsi10g00826 649 Pfam Armadillo/beta-catenin-like repeat 521 557 IPR000225 GO:0005515
Lsi10g00826 649 Pfam Armadillo/beta-catenin-like repeat 398 437 IPR000225 GO:0005515
Lsi10g00826 649 Pfam Armadillo/beta-catenin-like repeat 481 519 IPR000225 GO:0005515
Lsi10g00826 649 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 275 349 IPR013083 -
Lsi10g00826 649 SMART arm_5 604 644 IPR000225 GO:0005515
Lsi10g00826 649 SMART arm_5 521 561 IPR000225 GO:0005515
Lsi10g00826 649 SMART arm_5 398 438 IPR000225 GO:0005515
Lsi10g00826 649 SMART arm_5 562 602 IPR000225 GO:0005515
Lsi10g00826 649 SMART arm_5 480 520 IPR000225 GO:0005515
Lsi10g00826 649 SMART arm_5 439 479 IPR000225 GO:0005515
Lsi10g00826 649 Pfam U-box domain 275 344 IPR003613 GO:0004842|GO:0016567
Lsi10g00826 649 Coils Coil 147 167 - -
Lsi10g00826 649 CDD RING-Ubox_PUB 279 321 IPR045210 -
Lsi10g00826 649 ProSiteProfiles U-box domain profile. 274 348 IPR003613 GO:0004842|GO:0016567
Lsi10g00826 649 SUPERFAMILY ARM repeat 369 643 IPR016024 -
Lsi10g00826 649 Gene3D - 31 140 IPR036537 GO:0007166
Lsi10g00826 649 PANTHER U BOX DOMAIN-CONTAINING 28 646 - -
Lsi10g00826 649 SUPERFAMILY RING/U-box 275 349 - -
Lsi10g00826 649 Gene3D - 361 509 IPR011989 -
Lsi10g00826 649 MobiDBLite consensus disorder prediction 1 27 - -
Lsi10g00826 649 MobiDBLite consensus disorder prediction 1 22 - -
Lsi10g00826 649 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 28 646 - -
Lsi10g00826 649 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 450 492 IPR000225 GO:0005515
Lsi10g00826 649 Gene3D - 510 647 IPR011989 -
Lsi10g00826 649 SMART Ubox_2 278 341 IPR003613 GO:0004842|GO:0016567
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00826 - - - csv:101214151 1173.69
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00257 Lsi-Chr7:2817688 Lsi10g00826 Lsi-Chr10:11573842 7.48E-27 dispersed
Lsi10g00826 Lsi-Chr10:11573842 Lsi10g01368 Lsi-Chr10:17834008 2.24E-153 dispersed
Lsi10g00826 Lsi-Chr10:11573842 Lsi02g01363 Lsi-Chr2:18368167 1.13E-165 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g278 . Blo15g00428 Bda06g00438 . . . . . . . . Cma20g00717 . Car20g00618 . . . . . . . . . . . . . . . . . Cone12ag1269 Cone8ag1323 . . Lsi10g00826 . . . . . . . . . . . . . Cmo20g00715 . . . . Cpe16g00348 . . . . . . . . . . . . . . . . . . Cme11g01284
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi03g01518 . 1 1097 U-box Gene Family AT5G15400 70.7 0.0e+00 1494.2
Lsi10g00540 . 168 756 U-box Gene Family AT2G23140 64.5 4.3e-114 409.1
Lsi08g01601 . 1 779 U-box Gene Family AT1G24330 59.2 8.5e-242 833.6
Lsi04g00666 . 45 799 U-box Gene Family AT1G24330 57.9 4.1e-228 788.1
Lsi08g01601 . 1 778 U-box Gene Family AT1G67530 59.9 2.1e-240 828.9
Lsi04g00666 . 45 800 U-box Gene Family AT1G67530 56.8 1.8e-223 772.7
Lsi01g00373 . 1 362 U-box Gene Family AT4G21350 61.5 4.4e-119 424.9
Lsi05g01140 . 135 460 U-box Gene Family AT3G07360 55.3 4.9e-82 301.6
Lsi04g01143 CCT 260 419 U-box Gene Family AT1G71020 72.0 3.5e-60 229.6
Lsi04g00088 . 213 414 U-box Gene Family AT1G71020 51.2 4.4e-47 186.0
Lsi10g01368 . 305 474 U-box Gene Family AT1G71020 56.2 8.4e-46 181.8
Lsi02g01363 . 288 481 U-box Gene Family AT1G71020 50.8 6.0e-44 175.6
Lsi04g01143 CCT 16 623 U-box Gene Family AT1G23030 55.4 2.3e-96 350.1
Lsi10g01368 . 143 684 U-box Gene Family AT2G28830 51.0 5.5e-100 362.1
Lsi02g01363 . 117 689 U-box Gene Family AT2G28830 56.9 6.0e-99 358.6
Lsi02g01363 . 16 720 U-box Gene Family AT3G46510 64.3 1.1e-160 563.9
Lsi10g01368 . 3 687 U-box Gene Family AT3G46510 62.2 4.4e-154 542.0
Lsi04g00088 . 9 623 U-box Gene Family AT3G46510 58.1 4.0e-123 439.1
Lsi04g00088 . 10 625 U-box Gene Family AT3G54850 68.7 1.3e-166 583.6
Lsi10g01368 . 13 677 U-box Gene Family AT3G54850 53.4 2.8e-110 396.4
Lsi02g01363 . 23 681 U-box Gene Family AT3G54850 52.6 5.2e-96 349.0
Lsi10g00826 . 93 648 U-box Gene Family AT5G42340 64.0 1.1e-115 414.5
Lsi01g01607 . 9 669 U-box Gene Family AT5G01830 57.4 1.1e-197 686.8
Lsi02g00832 . 1 714 U-box Gene Family AT1G29340 65.9 4.4e-248 854.4
Lsi05g00339 . 27 435 U-box Gene Family AT5G37490 50.5 4.5e-107 385.2
Lsi10g01136 . 10 410 U-box Gene Family AT3G52450 50.9 3.7e-117 418.7
Lsi03g01816 . 1 404 U-box Gene Family AT3G52450 50.6 1.0e-114 410.6
Lsi01g01651 . 14 155 U-box Gene Family AT3G52450 57.7 4.9e-45 179.1
Lsi03g01816 . 1 403 U-box Gene Family AT2G35930 54.5 1.7e-119 426.4
Lsi10g01136 . 10 409 U-box Gene Family AT2G35930 52.3 1.3e-116 416.8
Lsi01g01651 . 14 158 U-box Gene Family AT2G35930 56.6 1.4e-46 184.1
Lsi05g00219 . 9 424 U-box Gene Family AT3G19380 64.2 2.8e-146 515.4
Lsi05g00219 . 1 424 U-box Gene Family AT1G49780 64.6 4.5e-152 534.6
Lsi01g01136 CCT 1 407 U-box Gene Family AT5G64660 53.9 1.4e-121 433.3
Lsi01g01136 CCT 1 407 U-box Gene Family AT5G09800 50.8 3.6e-106 382.1
Lsi04g01467 CCT 1 454 U-box Gene Family AT3G49810 63.5 2.4e-156 548.9
Lsi08g01540 CCT 1 454 U-box Gene Family AT3G49810 61.5 5.8e-150 527.7
Lsi04g01467 CCT 1 454 U-box Gene Family AT5G65920 62.4 2.6e-150 528.9
Lsi08g01540 CCT 1 454 U-box Gene Family AT5G65920 62.3 6.3e-149 524.2
Lsi05g01216 . 2172 2672 U-box Gene Family AT3G49060 50.2 7.4e-137 485.0
Lsi05g02044 CCT 1 880 U-box Gene Family AT2G45910 50.2 2.5e-223 772.3
Lsi09g00480 . 22 822 U-box Gene Family AT4G25160 51.9 1.3e-214 743.4
Lsi02g01538 . 1 548 U-box Gene Family AT5G40140 53.8 2.7e-96 349.7
Lsi08g00778 . 4 813 U-box Gene Family AT1G76390 60.8 1.1e-268 922.9
Lsi08g00778 . 13 813 U-box Gene Family AT1G20780 61.8 2.4e-279 958.4
Lsi08g01601 . 1 780 U-box Gene Family AT1G27910 62.0 1.2e-264 909.4
Lsi04g00666 . 45 811 U-box Gene Family AT1G27910 62.7 1.5e-262 902.5
Lsi01g00896 . 672 1220 U-box Gene Family AT5G67530 73.8 1.6e-235 812.4
Lsi03g01872 . 12 162 U-box Gene Family AT5G67530 50.3 9.1e-42 168.7
Lsi01g00816 . 6 802 U-box Gene Family AT5G65500 50.2 1.3e-208 723.4
Lsi05g01766 . 1 517 U-box Gene Family AT1G04510 74.4 6.6e-222 766.9
Lsi05g01766 . 1 486 U-box Gene Family AT2G33340 73.6 4.6e-209 724.2
Lsi05g01139 . 9 150 U-box Gene Family AT3G07370 59.2 5.2e-40 161.8
Lsi03g01518 . 1 1097 U-box Gene Family AT5G15400 70.7 0.0e+00 1494.2
Lsi10g00540 . 168 756 U-box Gene Family AT2G23140 64.5 4.3e-114 409.1
Lsi08g01601 . 1 779 U-box Gene Family AT1G24330 59.2 8.5e-242 833.6
Lsi04g00666 . 45 799 U-box Gene Family AT1G24330 57.9 4.1e-228 788.1
Lsi08g01601 . 1 778 U-box Gene Family AT1G67530 59.9 2.1e-240 828.9
Lsi04g00666 . 45 800 U-box Gene Family AT1G67530 56.8 1.8e-223 772.7
Lsi01g00373 . 1 362 U-box Gene Family AT4G21350 61.5 4.4e-119 424.9
Lsi05g01140 . 135 460 U-box Gene Family AT3G07360 55.3 4.9e-82 301.6
Lsi04g01143 CCT 260 419 U-box Gene Family AT1G71020 72.0 3.5e-60 229.6
Lsi04g00088 . 213 414 U-box Gene Family AT1G71020 51.2 4.4e-47 186.0
Lsi10g01368 . 305 474 U-box Gene Family AT1G71020 56.2 8.4e-46 181.8
Lsi02g01363 . 288 481 U-box Gene Family AT1G71020 50.8 6.0e-44 175.6
Lsi04g01143 CCT 16 623 U-box Gene Family AT1G23030 55.4 2.3e-96 350.1
Lsi10g01368 . 143 684 U-box Gene Family AT2G28830 51.0 5.5e-100 362.1
Lsi02g01363 . 117 689 U-box Gene Family AT2G28830 56.9 6.0e-99 358.6
Lsi02g01363 . 16 720 U-box Gene Family AT3G46510 64.3 1.1e-160 563.9
Lsi10g01368 . 3 687 U-box Gene Family AT3G46510 62.2 4.4e-154 542.0
Lsi04g00088 . 9 623 U-box Gene Family AT3G46510 58.1 4.0e-123 439.1
Lsi04g00088 . 10 625 U-box Gene Family AT3G54850 68.7 1.3e-166 583.6
Lsi10g01368 . 13 677 U-box Gene Family AT3G54850 53.4 2.8e-110 396.4
Lsi02g01363 . 23 681 U-box Gene Family AT3G54850 52.6 5.2e-96 349.0
Lsi10g00826 . 93 648 U-box Gene Family AT5G42340 64.0 1.1e-115 414.5
Lsi01g01607 . 9 669 U-box Gene Family AT5G01830 57.4 1.1e-197 686.8
Lsi02g00832 . 1 714 U-box Gene Family AT1G29340 65.9 4.4e-248 854.4
Lsi05g00339 . 27 435 U-box Gene Family AT5G37490 50.5 4.5e-107 385.2
Lsi10g01136 . 10 410 U-box Gene Family AT3G52450 50.9 3.7e-117 418.7
Lsi03g01816 . 1 404 U-box Gene Family AT3G52450 50.6 1.0e-114 410.6
Lsi01g01651 . 14 155 U-box Gene Family AT3G52450 57.7 4.9e-45 179.1
Lsi03g01816 . 1 403 U-box Gene Family AT2G35930 54.5 1.7e-119 426.4
Lsi10g01136 . 10 409 U-box Gene Family AT2G35930 52.3 1.3e-116 416.8
Lsi01g01651 . 14 158 U-box Gene Family AT2G35930 56.6 1.4e-46 184.1
Lsi05g00219 . 9 424 U-box Gene Family AT3G19380 64.2 2.8e-146 515.4
Lsi05g00219 . 1 424 U-box Gene Family AT1G49780 64.6 4.5e-152 534.6
Lsi01g01136 CCT 1 407 U-box Gene Family AT5G64660 53.9 1.4e-121 433.3
Lsi01g01136 CCT 1 407 U-box Gene Family AT5G09800 50.8 3.6e-106 382.1
Lsi04g01467 CCT 1 454 U-box Gene Family AT3G49810 63.5 2.4e-156 548.9
Lsi08g01540 CCT 1 454 U-box Gene Family AT3G49810 61.5 5.8e-150 527.7
Lsi04g01467 CCT 1 454 U-box Gene Family AT5G65920 62.4 2.6e-150 528.9
Lsi08g01540 CCT 1 454 U-box Gene Family AT5G65920 62.3 6.3e-149 524.2
Lsi05g01216 . 2172 2672 U-box Gene Family AT3G49060 50.2 7.4e-137 485.0
Lsi05g02044 CCT 1 880 U-box Gene Family AT2G45910 50.2 2.5e-223 772.3
Lsi09g00480 . 22 822 U-box Gene Family AT4G25160 51.9 1.3e-214 743.4
Lsi02g01538 . 1 548 U-box Gene Family AT5G40140 53.8 2.7e-96 349.7
Lsi08g00778 . 4 813 U-box Gene Family AT1G76390 60.8 1.1e-268 922.9
Lsi08g00778 . 13 813 U-box Gene Family AT1G20780 61.8 2.4e-279 958.4
Lsi08g01601 . 1 780 U-box Gene Family AT1G27910 62.0 1.2e-264 909.4
Lsi04g00666 . 45 811 U-box Gene Family AT1G27910 62.7 1.5e-262 902.5
Lsi01g00896 . 672 1220 U-box Gene Family AT5G67530 73.8 1.6e-235 812.4
Lsi03g01872 . 12 162 U-box Gene Family AT5G67530 50.3 9.1e-42 168.7
Lsi01g00816 . 6 802 U-box Gene Family AT5G65500 50.2 1.3e-208 723.4
Lsi05g01766 . 1 517 U-box Gene Family AT1G04510 74.4 6.6e-222 766.9
Lsi05g01766 . 1 486 U-box Gene Family AT2G33340 73.6 4.6e-209 724.2
Lsi05g01139 . 9 150 U-box Gene Family AT3G07370 59.2 5.2e-40 161.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007785 2 1 2 0 1 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 1 1 1 1 1 1 1 2 1 2 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi10g00826 Lsi_Chr10 FPKM 4.307552 5.325457 17.953598 18.770679 9.579882 8.862946 12.417967 4.433971 4.661334 5.815301