Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00828 ATGGATTCTCCTCTGTTTTCTTTCAACGTTTTCCCTTCCACTTCTACTACCAATTCAACTTCAAATCCCCGCCGGAAACGGACTAAATTCATCAAAACAACTACTTCTGGAACCGGCAAGCCGACGAAGCAGGCAAAGAAAGCTCCCAACAATATCACTCCCCCCTGTTCCGAGTGCGGCAAGAAATTCTGGTCATGGAAGGCTCTGTTCGGCCATATGCGCTGCCACCCTGAGCGTCAATGGCGAGGAATCAATCCGCCCCCAAATTTCCTCCGCCCTTTCGCCGCCACTGAATTACAACAAGATCACGACATCGCTGCATCTTTGATCATGCTCGCCAATGCCTCACCGGATGCCGGCCGGGGAACGGTGGAGGACTACAAACCAAGGCCATATTCTGGAATTTTGGATTTGAATTTGCCTCCTCCTCCTCCACCAATGGAGGAGATTGAACAAGAATCTTCATCTTCCTATTCATCAGGGATTGTTTTGGATCTCAGATTAGGGCTTAATTAA 516 48.84 MDSPLFSFNVFPSTSTTNSTSNPRRKRTKFIKTTTSGTGKPTKQAKKAPNNITPPCSECGKKFWSWKALFGHMRCHPERQWRGINPPPNFLRPFAATELQQDHDIAASLIMLANASPDAGRGTVEDYKPRPYSGILDLNLPPPPPPMEEIEQESSSSYSSGIVLDLRLGLN 171
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 11636937 11637452 + Lsi10G008280.1 Lsi10g00828 672385

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00828 171 MobiDBLite consensus disorder prediction 1 24 - -
Lsi10g00828 171 ProSiteProfiles Zinc finger C2H2 type domain profile. 54 81 IPR013087 -
Lsi10g00828 171 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 14 117 - -
Lsi10g00828 171 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 133 170 - -
Lsi10g00828 171 MobiDBLite consensus disorder prediction 32 49 - -
Lsi10g00828 171 ProSitePatterns Zinc finger C2H2 type domain signature. 56 76 IPR013087 -
Lsi10g00828 171 SUPERFAMILY beta-beta-alpha zinc fingers 55 79 IPR036236 -
Lsi10g00828 171 MobiDBLite consensus disorder prediction 1 49 - -
Lsi10g00828 171 Pfam C2H2-type zinc finger 56 78 - -
Lsi10g00828 171 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 14 117 - -
Lsi10g00828 171 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 133 170 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00828 - - - bhj:120072235 215.698
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi10g00828 Lsi11g01280 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g01048 Lsi-Chr7:15867619 Lsi10g00828 Lsi-Chr10:11636937 3.96E-11 dispersed
Lsi10g00828 Lsi-Chr10:11636937 Lsi11g01280 Lsi-Chr11:21415643 3.28E-28 dispersed
Lsi10g00828 Lsi-Chr10:11636937 Lsi06g01429 Lsi-Chr6:24837405 1.78E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g284 . . Bda06g00439 . Bpe07g00672 . . Bma12g00878 Cmo19g00814 . . . . Car20g00616 Sed08g2863 . Cpe15g00638 Bhi05g01589 Tan02g0583 Cmetu11g2392 . Hepe02g0374 . . Cla02g00353 Cam02g0362 Cec02g0363 Cco02g0370 Clacu02g0353 Cmu02g0350 Cre02g0682 Cone12ag1272 Cone8ag1326 Cone3ag1243 . Lsi10g00828 Csa07g00181 . Cme01g01152 . . . . . . . . . . Cmo20g00713 . Cma19g00793 . Car19g00610 Cpe16g00350 . . . . . . . . . . . . . . . Lsi11g01280 . Chy01g00600 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015162 0 1 0 0 0 1 1 1 1 0 1 1 0 0 1 1 1 0 1 1 1 0 0 0 0 1 0 0 0 0 14
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26049 PF13912 zf-C2H2_6 3.70E-07 CL0361 Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi10g00828 Lsi_Chr10 FPKM 20.104115 21.986368 16.563606 16.268753 10.301555 12.54182 12.096357 8.223717 8.090374 8.541391