Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00850 ATGGGAAATAAGCAGACGAAGATTAATCTGTTTATCTCTGGTTTATGTTTGTGTTTTCTGCTTTTATTATGGTCCGCCAGAGGGAAGCTCATCAATACATTAAGTGACAGTAATGGAGATTCTGTTGTTTCGGATGAAGGAAGGTTCGAGCTTGGTTTTTTCAGTCCTCATGGAAGCTTAGGTGCAAGAAGATACGTTGGAATATGGTATCACGGCACAAAACCAGAAGTGGTTGTATGGGTTGCCAATAGGAACCAACCACTATACAACAACAATGGAATTTTCGCTATAAAAAATGGCAACATCAAGGTATTGGCATCAAACAACACTGATTTATGGTCTACCGATCTCCAACTCCCTTCTGACAACACAACAATGGAGCTGATGACTTCTGGGAATTTAGTTCTTAAGGAATCAGGTGTCAAAGGTAGAATTCTGTGGCAAAGCTTCCAAAATCCAACCGACACATTTCTTCCGGGAATGAACATGACCGATGACTTGAAATTGACTTCTTGGAAAGCTTCAGATGACCCATCGTCTGGGAATTTCACGTTTCTCAAGGATACAGGAGGCCGCTACATCATCGAGAGACTAAGTGCACAGTATTGGGTTAGCAAGGAATTATGGCAAAATTACTCAACTGAAACAGATGAAAAGATTGATGAAGTAATTGACTTACTGTCACAGATTAGTGTCAATAACTTGAAGGCAAACAACTATAAGGTTCTTTTTCAAAATCAAGAGCTGGACTACAACTACACAAGAGCAGTTATGGATTTCAGGGGGAAGATACAGTACCTTGCTAGAAACAGAGCAAGTGGAAAATGGGATGTCATTTGGTTGGAACCGGAAAACATATGCGATGTGGTATCAGCTTGTGGGGTCTTTGCTAGCTGTCGGAGTGACACTGAACACAATTGCAGATGCTTGCCTGGGTTTGAGCCTAAGTCCAAGGAAGAATGGGATTCTGGTGATTACTCAAATGGGTGCAAGAGAATATCAGAAATTTGCATCAAAGAAGAAATTGAAGCTCGAGATTTCTTGATAATAAATATGAAGGTGAGAAAGACGTCTAATATTGTCAAAATCAATGTTATGGGGGAATGTCAAACCAAGTGCCTTGAATCTTGTACATGTAAAGCGTTTGTAGAAATAAGTCCTAGTAGATCTGATTTTGTTTGCGCCATTTGGGAAGATGACCTCCAAAGTATTTGGGAATATACAGATGGTGGTGCTGCTGTTAACATCCGTATCAAATATTCTGACATTGAATTGACACAATTCGATTGTAAAACATGTGGAAGCAACATCGTCCCTTATCCTTTAAGTTTGAGCACAGAATCCAACTGCGGTGATCCTCTATATCATAACTTCAGTTGCAACTTTTCCACTGGTCAGGTCATCTTTAAAACTGCAGATGTTTACTACAATGTCACCAACATCGATCCACAACTAAAAACTTTTACCATTGCAACAAATGGGTCTATCTGTAGAGGTAATGATACAGTTGCAATTCAAAGGCTTCTGAAATTGGAACACTCGTCTACATTCATAGTTAGTAGTGGCTGTAACTCTGAATTCAATGAAATTGATATTCAATGGGAGAAACCATTAGAGCCAATCTGCAATTCACCAAGAGATTGCACCAATTGGCCGAATTCATTGTGCAACTCATCAGCAGATGGAACTAAAAGGTGCTTGTGTAAATCTTCTTTTAACTGGACTGGTACCGGCTGCCAGATTCTTCCAGAGGATGGTTTCGGTTTAAGCCAGCCACATCCAAGGCAGAGAAGTACCAGAGTTGGTATCGTTGTTGCTGTGACCATTGTTGGGTTGATTGTTATTTCCTGCTTGGTGTTGTATATTTACTACAAAAGAAGGAAGGTACAAAATAAAAAAGAGCAAAGAACAAGTTTTTGGAGAAATCAGGAAACGACACACTTGTATGAAAGTGAGAAACGTATCCGAGACTTTATGGGTTCTGGAATGTTTGGAGAAGATGATAGAAAAGCCATAGAAGTACCAGTTTTTGATTTGGAAACCATACTTGTTGCTACAGACAACTTCTCAGAAGTAAATAAAATTGGACGAGGAGGATTCGGGACAGTTTACAAGGGACTTTTCCCAGGAGGACTGGAAATTGCAATAAAGAGGTTGTCGCAGGGTTCTGCCCAAGGCGTAGATGAGTTTAAGAATGAAGCAATTCTGATCGCCAAACTTCAGCATCGGAATCTGACCATTTCTTCTTTTTTGCTAGATCGAACGCAGAGTTTATTGGTGAATTGGGAGATGCGTTTTAATATCATCATAGGCATTGCACGAGGGCTAGTTTATCTCCACGAAGATTCAAGGTTGAGGATTATTCATAGAGATTTGAAAACAAGCAATGTTCTGTTGGACGCAGAAATGAATCCTAAAATTTCCGATTTTGGTTTAGCAAGAATCTTTGATGGCAAGCAAACAGAGGCAGTCACCAATAGAGTTGTTGGAACTTATGGATACATGTCACCTGAATATGCGTTGGATGGATCATTCTCAGTGAAATCTGACGTGTTTAGTTTTGGCATAGTTGTGTTGGAGATTGTTAGTGGAAGAAGGAACACTGGGTTCTACCAATCTAAAGAGGCATTGAACCTTCTTGGATATGTATGGAAGTTATGGAAAGAAAAAAGAGCAATGGAAATAGCAGAGGCGACCATACAAGAAAGCTGCAATCCAAATGAAGTTGTAAAATGTGTGGCTGTGGGACTGCTTTGTGTACAAGAAGACCCCAACGATCGACCCACAATGTCAAACGTAGCTTTTATGCTAAGCTCTGGCAGTGACCTTGCTTCTCTTCCAGATCCTAAACAGCCGGGTTTCGTTGATAAAAGATCAACTCCTTCTACTTCTTCTGCAACTTCTTCTTTGGGCTTTAAGCAAGAAATTGTAAGCAATGATTATAGCTTACTTGAGCCTCGTTAA 2964 40.05 MGNKQTKINLFISGLCLCFLLLLWSARGKLINTLSDSNGDSVVSDEGRFELGFFSPHGSLGARRYVGIWYHGTKPEVVVWVANRNQPLYNNNGIFAIKNGNIKVLASNNTDLWSTDLQLPSDNTTMELMTSGNLVLKESGVKGRILWQSFQNPTDTFLPGMNMTDDLKLTSWKASDDPSSGNFTFLKDTGGRYIIERLSAQYWVSKELWQNYSTETDEKIDEVIDLLSQISVNNLKANNYKVLFQNQELDYNYTRAVMDFRGKIQYLARNRASGKWDVIWLEPENICDVVSACGVFASCRSDTEHNCRCLPGFEPKSKEEWDSGDYSNGCKRISEICIKEEIEARDFLIINMKVRKTSNIVKINVMGECQTKCLESCTCKAFVEISPSRSDFVCAIWEDDLQSIWEYTDGGAAVNIRIKYSDIELTQFDCKTCGSNIVPYPLSLSTESNCGDPLYHNFSCNFSTGQVIFKTADVYYNVTNIDPQLKTFTIATNGSICRGNDTVAIQRLLKLEHSSTFIVSSGCNSEFNEIDIQWEKPLEPICNSPRDCTNWPNSLCNSSADGTKRCLCKSSFNWTGTGCQILPEDGFGLSQPHPRQRSTRVGIVVAVTIVGLIVISCLVLYIYYKRRKVQNKKEQRTSFWRNQETTHLYESEKRIRDFMGSGMFGEDDRKAIEVPVFDLETILVATDNFSEVNKIGRGGFGTVYKGLFPGGLEIAIKRLSQGSAQGVDEFKNEAILIAKLQHRNLTISSFLLDRTQSLLVNWEMRFNIIIGIARGLVYLHEDSRLRIIHRDLKTSNVLLDAEMNPKISDFGLARIFDGKQTEAVTNRVVGTYGYMSPEYALDGSFSVKSDVFSFGIVVLEIVSGRRNTGFYQSKEALNLLGYVWKLWKEKRAMEIAEATIQESCNPNEVVKCVAVGLLCVQEDPNDRPTMSNVAFMLSSGSDLASLPDPKQPGFVDKRSTPSTSSATSSLGFKQEIVSNDYSLLEPR 987
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 12508401 12512511 + Lsi10G008500.1 Lsi10g00850 672407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00850 987 Gene3D - 29 151 IPR036426 -
Lsi10g00850 987 SUPERFAMILY Protein kinase-like (PK-like) 673 937 IPR011009 -
Lsi10g00850 987 Pfam PAN-like domain 351 403 IPR003609 -
Lsi10g00850 987 Gene3D Phosphorylase Kinase; domain 1 625 747 - -
Lsi10g00850 987 SMART blect_4 33 153 IPR001480 -
Lsi10g00850 987 CDD B_lectin 33 153 IPR001480 -
Lsi10g00850 987 Pfam Protein tyrosine and serine/threonine kinase 749 934 IPR001245 GO:0004672|GO:0006468
Lsi10g00850 987 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 33 745 - -
Lsi10g00850 987 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 749 976 - -
Lsi10g00850 987 MobiDBLite consensus disorder prediction 956 971 - -
Lsi10g00850 987 MobiDBLite consensus disorder prediction 944 971 - -
Lsi10g00850 987 Gene3D Transferase(Phosphotransferase) domain 1 748 945 - -
Lsi10g00850 987 ProSitePatterns Protein kinases ATP-binding region signature. 695 717 IPR017441 GO:0005524
Lsi10g00850 987 SUPERFAMILY alpha-D-mannose-specific plant lectins 78 178 IPR036426 -
Lsi10g00850 987 ProSiteProfiles Protein kinase domain profile. 689 954 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi10g00850 987 ProSiteProfiles Bulb-type lectin domain profile. 27 149 IPR001480 -
Lsi10g00850 987 SMART serkin_6 689 936 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi10g00850 987 ProSiteProfiles PAN/Apple domain profile. 337 421 IPR003609 -
Lsi10g00850 987 Pfam D-mannose binding lectin 78 168 IPR001480 -
Lsi10g00850 987 ProSitePatterns Serine/Threonine protein kinases active-site signature. 787 799 IPR008271 GO:0004672|GO:0006468
Lsi10g00850 987 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 33 745 - -
Lsi10g00850 987 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 749 976 - -
Lsi10g00850 987 Pfam S-locus glycoprotein domain 233 317 IPR000858 GO:0048544
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi10g00850 Lsi-Chr10:12508401 Lsi02g00676 Lsi-Chr2:6059594 1.42E-44 dispersed
Lsi10g00850 Lsi-Chr10:12508401 Lsi10g00851 Lsi-Chr10:12522500 0 tandem
Lsi01g00384 Lsi-Chr1:3350839 Lsi10g00850 Lsi-Chr10:12508401 7.19E-103 wgd
Lsi10g00850 Lsi-Chr10:12508401 Lsi11g01496 Lsi-Chr11:23434550 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83957 PF07714 PK_Tyr_Ser-Thr 1.40E-27 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00850 - - cpep:111777045 1509.2