Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00851 ATGGGAAACAAGAAGATGAAGATTGATCTCTTTATCTCCAATTTATGCTTGTGTTTTTTGCTTTTATTATGGTCTGCCAGAGGGAGTCCCGTCAATACATTAAGTGACAGTAATGGAGATTCTGTTGTTTCAGATGGAGGAAGGTTCGAACTTGGTTTTTTCAGTCCTCATGGAAGCTCAGAAGCAAGAAGATACGTGGGAATATGGTACCACGACACAAAACCGGAGGTGGTTGTATGGGTTGCCAATAGGAACCAACCACTATACAACAACAATGGAATTTTTACTATAAAAAATGGCAACCTCAAGGCATTGACATCAAATAGCAATGACGATTTATGGTCCACTCATCTCCAACTCCCTTCTGACAACACAACAATGGAGCTGATGGATTCTGGGAATTTAGTTCTTAAGGAATTTGGTGACAAAGGTAGAATTCTGTGGCAAAGCTTCCAAAATCCAACCGACAAATTTCTTCCGGGAATGAACATGATCGATGACTTGATGTTGACTTCTTGGAAAACTTCAGATGACCCATCGCTTGGGCATTTCACGTTTCTCAAAGATACAGAAGGCCGCTACATCATCGAGAAACTAAGTGCACGGTATTGGGTTAGCAAGGAATTATGGCAAAATTACTCGGCCGAAACTGATGGAAAGATTGCTGAAGTAATAGACTTATTATCAAAACTTAGTGTCGATAACTTGAAGGCTTACAACTACACCGTTCTTTTTCAAAATCAAAAGTTGGATTACAACTATACAAGAGCAGTCATGAATTCCACGGGGAAAATTCAGTATCTTGCAAGAAACAGAGAGAGTGGAAAATGGGATGTCATTTGGTCGGAACCAGAAAACATATGCAGTCTGTTAACAACTTGTGGGACATTCGCTAGTTGTCGTAGTGACACTAAACACACTTGCAAATGCTTGCCTGGGTTTGAACCCAAGTCCAAAGATGAATGGGATTCTGGTGATTACTCAAATGGGTGCCAGAGAAAATCAGAAATTTGCATCAAAGAAGAGGTTGAAGCTCGAGATTTCTTGACAATACATATGATGGTGAGGAAGACGTCGAATATTGTCAAAGTCAATGGTACTGATGGGGTATGTCAAAATAAGTGCCTTGAATCTTGTACATGTAAAGCGTATGCAGAAATAAGTACCAGAAGATCCGATATTTTGTGCGCTATTTGGGAAGATGACCTCCAAAACATTTGGGAAGATTATTATATAGATCGTGATGTTAACATCCGCATCAAGCATTATGACATCGAATATACAAGACTCGACTGTGAAGCATGTGGAAGCAGCATTATCCCTTATCCTCTGAGCACTGGCCCCAACTGCGGTGATCCTATGTATCGTAACTTCTATTGTGCCCTTATTATTAGCAATCTCTTCTTTCAGTCAGGCGGTTTTTACTACGGTGTCACCAACATCGATTCGGAATTAAATACTTTTACCATTGCAACAAACGGGTCTATCTGCAGAGCTAATGATACAGATGCAATTCAAAAGCTTCTGGAATTGGAACACTCGTCTACATTCAAAGTAAGCAGCGGGTGTAACTCTGAATTCAATGAAATTGATATTCAATGGGAGAAACCATTAGAGCCAATATGCAATTCACCAAGAGATTGCACCCATTGGCCGAATTCATTGTGCAACTCATCAACAGATGGAACAAAGAGGTGCTTGTGTAATTCTTCTTTTAACTGGAATGGTACCGGCTGCCATATTCTTCCAATGTCCTTCTTCGTAAGTGTTGCAATTAATGTACTTGTAGAGGATGGTTTCGGTTTGAGCCAACCACATCCAAGACAGAGAAGTACCAGAGTTGGTATCATTGTTGCAGTGACCATTGTTGGGTTGATTGTTATTTCTTGCTTGGTGTTGTATAGTTACTACAAAAGAAGGAAGGTACAAAATAAAAAAGAGCAAAGAACAAGTTTTTGGAGAAATCAAGAAACGACTCACTTGTATGAAAGTGAGAAACGTATCCGAGACTTTATGGGTTCCGGAATGTTTGGGGAAGATGATAGAAAAGCCATAGAAGTACCAGTTTTTGATTTGGAAACCTTACTTATTGCTACAGGCAACTTCTCAGAAGCAAACAAAATTGGACGAGGAGGATTTGGGACAGTTTACAAGGGACTTTTTCCAGGAGGACTGGAAATTGCAATAAAGAGGCTGTCGCAGTGTTCTGCGCAAGGTGTAGACGAGTTTAAGAATGAAGCAATTCTGATCGCCAAACTTCAGCATCGAAATCTGGTTAGACTTTTGGGCTATTGTGTTGCAGGAGAAGAAAAAATGTTGGTCTATGAATATATGCCCAACAAAAGCTTAGATTCTTTTATAATAAAAAAAAATTGTCATTTGCTAGATCGAACACAATGTTTACTGGTGAACTGGGAGATGCGGTTTAATATCATAGTGGGCATTGCTCAAGGGCTAGTTTATCGCCACGAAGATTCAAGATTGAGGATTATTCATAGAGATATGAAAACAAGCAATGTTCTGTTGGAAGCAGAAATGAATCCTAAAATTTCTGACTTTGGTTTAGCAAGAATCTTTGATGGCAAGCAGACAGAGGCAATCACTAATAGAGTTGTTGGAACTTACGGATACATGTCACCTGAATATGCATTGGATGGATCATTCTCAGTAAAATCCGACGTATTCAGTTTTGGCATAGTTGTGTTGGAGATTGTTAGTGGAAGAAGAAACACTGGATTCTACCACTCTAAGGAGGCATTGAACCTTCTTGGATATGTATGGAAGTTGTGGAGAGAAAAAAAGGCAATGGAAATAGCAGAAGTGGGCATACGAGAAAGCTGCAATCCAAATGAAGTTATAAAATGTGTAGCCGTGGGATTGCTTTGTGTGCAAGAAGACCTCAATGATCGTCCCACAATGTCAAATATAGCTTTTATGCTAAGCTCTGGTTGTGACCTTGCTTCACTTCCAGATCCTAAACAGCCGAGTTTCGTTGATAAAAGATCAACTCCTTCTACTTCTTCTGCAACCTCTTCTTTGGGATTCAAGCAAGAAATTGTAAGCAATGATTGTAGCTTACTTGAGCCTCGTTAA 3093 39.7 MGNKKMKIDLFISNLCLCFLLLLWSARGSPVNTLSDSNGDSVVSDGGRFELGFFSPHGSSEARRYVGIWYHDTKPEVVVWVANRNQPLYNNNGIFTIKNGNLKALTSNSNDDLWSTHLQLPSDNTTMELMDSGNLVLKEFGDKGRILWQSFQNPTDKFLPGMNMIDDLMLTSWKTSDDPSLGHFTFLKDTEGRYIIEKLSARYWVSKELWQNYSAETDGKIAEVIDLLSKLSVDNLKAYNYTVLFQNQKLDYNYTRAVMNSTGKIQYLARNRESGKWDVIWSEPENICSLLTTCGTFASCRSDTKHTCKCLPGFEPKSKDEWDSGDYSNGCQRKSEICIKEEVEARDFLTIHMMVRKTSNIVKVNGTDGVCQNKCLESCTCKAYAEISTRRSDILCAIWEDDLQNIWEDYYIDRDVNIRIKHYDIEYTRLDCEACGSSIIPYPLSTGPNCGDPMYRNFYCALIISNLFFQSGGFYYGVTNIDSELNTFTIATNGSICRANDTDAIQKLLELEHSSTFKVSSGCNSEFNEIDIQWEKPLEPICNSPRDCTHWPNSLCNSSTDGTKRCLCNSSFNWNGTGCHILPMSFFVSVAINVLVEDGFGLSQPHPRQRSTRVGIIVAVTIVGLIVISCLVLYSYYKRRKVQNKKEQRTSFWRNQETTHLYESEKRIRDFMGSGMFGEDDRKAIEVPVFDLETLLIATGNFSEANKIGRGGFGTVYKGLFPGGLEIAIKRLSQCSAQGVDEFKNEAILIAKLQHRNLVRLLGYCVAGEEKMLVYEYMPNKSLDSFIIKKNCHLLDRTQCLLVNWEMRFNIIVGIAQGLVYRHEDSRLRIIHRDMKTSNVLLEAEMNPKISDFGLARIFDGKQTEAITNRVVGTYGYMSPEYALDGSFSVKSDVFSFGIVVLEIVSGRRNTGFYHSKEALNLLGYVWKLWREKKAMEIAEVGIRESCNPNEVIKCVAVGLLCVQEDLNDRPTMSNIAFMLSSGCDLASLPDPKQPSFVDKRSTPSTSSATSSLGFKQEIVSNDCSLLEPR 1030
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 12522500 12526330 - Lsi10G008510.1 Lsi10g00851 672408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00851 1030 Gene3D Transferase(Phosphotransferase) domain 1 778 988 - -
Lsi10g00851 1030 SUPERFAMILY alpha-D-mannose-specific plant lectins 78 179 IPR036426 -
Lsi10g00851 1030 Pfam D-mannose binding lectin 78 167 IPR001480 -
Lsi10g00851 1030 SMART blect_4 33 154 IPR001480 -
Lsi10g00851 1030 ProSitePatterns Protein kinases ATP-binding region signature. 708 730 IPR017441 GO:0005524
Lsi10g00851 1030 Pfam Protein tyrosine and serine/threonine kinase 705 977 IPR001245 GO:0004672|GO:0006468
Lsi10g00851 1030 Gene3D Phosphorylase Kinase; domain 1 675 777 - -
Lsi10g00851 1030 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 32 1019 - -
Lsi10g00851 1030 Pfam PAN-like domain 357 405 IPR003609 -
Lsi10g00851 1030 Pfam S-locus glycoprotein domain 246 318 IPR000858 GO:0048544
Lsi10g00851 1030 SMART serkin_6 702 972 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi10g00851 1030 SUPERFAMILY Protein kinase-like (PK-like) 686 980 IPR011009 -
Lsi10g00851 1030 CDD STKc_IRAK 708 980 - -
Lsi10g00851 1030 ProSiteProfiles Protein kinase domain profile. 702 997 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi10g00851 1030 MobiDBLite consensus disorder prediction 995 1014 - -
Lsi10g00851 1030 CDD B_lectin 33 154 IPR001480 -
Lsi10g00851 1030 ProSitePatterns Serine/Threonine protein kinases active-site signature. 830 842 IPR008271 GO:0004672|GO:0006468
Lsi10g00851 1030 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 32 1019 - -
Lsi10g00851 1030 ProSiteProfiles Bulb-type lectin domain profile. 27 150 IPR001480 -
Lsi10g00851 1030 Gene3D - 31 152 IPR036426 -
Lsi10g00851 1030 MobiDBLite consensus disorder prediction 998 1014 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi10g00851 Lsi-Chr10:12522500 Lsi11g01496 Lsi-Chr11:23434550 0 dispersed
Lsi10g00850 Lsi-Chr10:12508401 Lsi10g00851 Lsi-Chr10:12522500 0 tandem
Lsi01g00372 Lsi-Chr1:3277497 Lsi10g00851 Lsi-Chr10:12522500 1.04E-47 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83958 PF07714 PK_Tyr_Ser-Thr 4.80E-44 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00851 - - cpep:111777045 1469.14