Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00864 ATGGCCCAACAAGGCAAGGTTCCTTCGATCTCCAACCAAGCTTGCATTCAGGACGAGGATGATCTAGGGTTTTTCGTCGGAGCAGCCGATATAAACCAATTCAAGGTTTTCTTTTTCATTATTTTCAATTCAATTATTCTATGGCACGACGCACCCCGGGCTACTCTGATTATCTCCATGACGGTGATAGCCCCATTGCTCGTGCTAGAGTGTCGCCGTTTAGTGTTGCAGATTACTTCCCCCAAGATTACTTCCCCCAAGGCCTCACTAGCCCTTGGTTTAGACGCCCACGTCTTCTCTCTTGTTCTCAAGTCCTGCACCGCCATCCGACGACCCCATTTGGGCACCTCCATCCATGCCCATTCTGCTAAATCCTCCCTGCTCTCAAGCCCATTTATTGCTTGTGCCTTAGTTGACATGTATGGAAAATCCTTGTCCGTCTCACTTGCACGAAAACTGTTCGACGAAATTCCCCATAGAAGTGTCGTCGTGTGGAATGCCATGTTATCACTATACGCGCACTCAAACATGTTATTTGATGGTTTGCGGTTGTTTGAAGCTATGGATGTGCCACCAAATACTTCGTCCTTCAACCCAATAATTGCAGCGTTGTCGGAATTGGAAGATGGATTCAAGGCCATTGCTTTCTATCGGAAAATGCAACATTGTGGGTTGAAGCCTAATTTAATTACCCTTCTTGCTTTATTACCTGCAAGTGTTGGAGTTGCGGCTTTGGACTTGATTAAACAAATTCATGGCTTTGCCATGAGAAGTGATATCGGTTGTCATCCGCAGTTAAGCAGTGGCCTTGTTGAGGCATATGGAAGATGCGGATGTCTCTCTTATGCACACCATGTGTTCGATAATATGACGGAAAGAGATGTAGTTGCATGGAGCAGTTTAATATCAGCACATGCTCTTCATGGGGAAGCCAGAACTGCTTTAAACATCTTTAAACAAATGGAATTGGGTAAAGTGCAGCCTGATGAGATTACATTTATAGGGGTGTTGAAGGCTTGTAGTCACGTGGGGTTAGCTGATGAAGCATTGGATTATTTTAGCCGTATGCAGAGAGATTATGGTCTACAAGCAAGCAGTGATCATTATTCTTGTCTAGTAGATGTATTGAGCAGAGCAGGGAGATTATACGAGGCGTATGACATTATTCGTGAGATGCCAGTGAGGGTGACGGCTAAAGCTTGGGGTGCCCTTCTTGGGGCTTGTCGAATTTATGGAGAGTTAGAGCTGGCGGAGATTGCAGGGAAGGCTTTGTTTGAGATAGAGCCTGAGAATGCTGCCAATTATGTGCTGTTGGCTAAAATGTATGCAAGTGTAGGGAGACATGAGGAGGCTCAAAGAATGAGAAGGGAAATGAAAGAGAGGAGAGTTAAGGTAGTACCTGGAATTTATGGATGTAATTGCGTTTATAATGGAGAATATGAATATAACATTGCTATCATCTGCAGTGGAGGTGGATTGGTGGCAGCTACTAATGGCAGATCTCTGTATCATTCTGCATATGCTGATGCAGTCCAACATGATGGTGACTGCAAGAAGAAGAAAGTGGTGGTGCTTGGAACAGGATGGGCTGGCACCAGTTTTTTGAAGAATCTCAAGAGTTCATCTTATGATGTTCATGTTATTTCTCCTCATAATTACTTTGCTTTCACCCCTTTGCTTCCTAGTGTCACATGTGGGACCGTTGAAGCACGCAGCATTGTCGAACCGATTCGTAGTATTACAAGGAAGAAAGGTCTGCATATTGAATTTAGGGAAGCTGAGTGCTATAAGATTGATGCAGAGAAGAAAAAGGTGTTCTGTCGATCAAGTCAAGACACAAATTTGGGTGGCAGAGAAGAATTTTCTGTTGATTATGACTACCTGATTATAGCCATGGGAGCTAAATCCAACACTTTCAACACACCTGGAGTTGAGGAAAATGCTCACTTCTTGAAGGGAGTGGAAGATGCTCAGAGGATTCGTCAGACCGTAATCGATTGTTTCGAGCGAGCCAGCCTTCCAAATCTAAGTGAAGAAGAGAAGAAGAGAACTCTTCACTTTGTAATAGTTGGAGGTGGTCCAACTGGGGTGGAATTTGCAGCAGAGCTTCATGACTTTGCAGTTGAGGATTTAGCAGGGTTGTATCCTTCATTGAAAAACTACGTGAAAATAACCCTCCTAGAGGCAGGAGATCATATTTTGAACATGTTTGACAAGAGGATTACTACCTTTGCTGAAGAAAAATTTCAAAGAGATGGGATTGAACTAAAAACTGGTTCCATGGTTGTAAAAGTAACTGATAAGGAAATCTCCACAAAAGAAAGAGCAACCGGTGAATTTGTGTCTGTTCCTTATGGAATGGTTGTCTGGTCTACCGGCATCGGCCCTCGTCCTCAAGTTGTTGATTTCATGAAGCAGATTGGTCAGACTAACAGAAGAGCTTTGGCAACTGATGAGTGGCTAAGGGTTGAAGGATGTGATGGTGTCTATGCTCTTGGTGATTGTGCCACTGTTAATCAAAGAAGAGTCATGGAAGATATTGCAGCAATATTCAGCAAGGCAGACAAGGACAAGTCAGGAACTTTAGCCCTGCAAGAGTTTCAAGAAGTGGTAGGTGATATTTGTGAGAGGTACCCTCAAGTAGAGATCTATCTGAAGAAGAAGCAGATGAAGAACTTTGCAGCTTTGTTGAAGAAGACGCAATCCGACGCACAGAAACAGTTGACCGAACTGGATATCGAAACCTTTAAGACTTTACTTTCTGAAGTCGATTCTCAGATGAAAAATCTCCCTGCTACTGCTCAAGTTGCTGCTCAACAAGGTGAATATCTTGCAAGCTGCTTTAACCGGATGGAACGGTGTGAAAAGTACCCCGAAGGCCCTCTCCGATTTCGAGGGACAGGACGCCACAGGTTTCACCCTTTCAGGTATAAGCATTTTGGGCAGTTTGCTCCTCTTGGGGGAGAACAAACTGCAGCTCAACTTCCTGGAGATTGGATCTCAATTGGTCATAGCACCCAGTGGCTTTGGTACTCTGTGTATGCCAGCAAGCTAGTAAGTTGGCGCACAAGGATTCTGGTCATGTCAGATTGGGGTAGAAGATTCATATTTGGCAGAGATTCAAGCAGAATCTGA 3135 44.11 MAQQGKVPSISNQACIQDEDDLGFFVGAADINQFKVFFFIIFNSIILWHDAPRATLIISMTVIAPLLVLECRRLVLQITSPKITSPKASLALGLDAHVFSLVLKSCTAIRRPHLGTSIHAHSAKSSLLSSPFIACALVDMYGKSLSVSLARKLFDEIPHRSVVVWNAMLSLYAHSNMLFDGLRLFEAMDVPPNTSSFNPIIAALSELEDGFKAIAFYRKMQHCGLKPNLITLLALLPASVGVAALDLIKQIHGFAMRSDIGCHPQLSSGLVEAYGRCGCLSYAHHVFDNMTERDVVAWSSLISAHALHGEARTALNIFKQMELGKVQPDEITFIGVLKACSHVGLADEALDYFSRMQRDYGLQASSDHYSCLVDVLSRAGRLYEAYDIIREMPVRVTAKAWGALLGACRIYGELELAEIAGKALFEIEPENAANYVLLAKMYASVGRHEEAQRMRREMKERRVKVVPGIYGCNCVYNGEYEYNIAIICSGGGLVAATNGRSLYHSAYADAVQHDGDCKKKKVVVLGTGWAGTSFLKNLKSSSYDVHVISPHNYFAFTPLLPSVTCGTVEARSIVEPIRSITRKKGLHIEFREAECYKIDAEKKKVFCRSSQDTNLGGREEFSVDYDYLIIAMGAKSNTFNTPGVEENAHFLKGVEDAQRIRQTVIDCFERASLPNLSEEEKKRTLHFVIVGGGPTGVEFAAELHDFAVEDLAGLYPSLKNYVKITLLEAGDHILNMFDKRITTFAEEKFQRDGIELKTGSMVVKVTDKEISTKERATGEFVSVPYGMVVWSTGIGPRPQVVDFMKQIGQTNRRALATDEWLRVEGCDGVYALGDCATVNQRRVMEDIAAIFSKADKDKSGTLALQEFQEVVGDICERYPQVEIYLKKKQMKNFAALLKKTQSDAQKQLTELDIETFKTLLSEVDSQMKNLPATAQVAAQQGEYLASCFNRMERCEKYPEGPLRFRGTGRHRFHPFRYKHFGQFAPLGGEQTAAQLPGDWISIGHSTQWLWYSVYASKLVSWRTRILVMSDWGRRFIFGRDSSRI 1044
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 12804487 12814797 - Lsi10G008640.1 Lsi10g00864 672421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00864 1044 Pfam E motif 411 469 IPR046848 -
Lsi10g00864 1044 Pfam Pyridine nucleotide-disulphide oxidoreductase 520 845 IPR023753 GO:0016491
Lsi10g00864 1044 Pfam PPR repeat family 293 341 IPR002885 -
Lsi10g00864 1044 ProSiteProfiles EF-hand calcium-binding domain profile. 842 877 IPR002048 GO:0005509
Lsi10g00864 1044 TIGRFAM PPR: pentatricopeptide repeat domain 296 330 IPR002885 -
Lsi10g00864 1044 TIGRFAM PPR: pentatricopeptide repeat domain 196 228 IPR002885 -
Lsi10g00864 1044 Pfam PPR repeat 368 393 IPR002885 -
Lsi10g00864 1044 Pfam PPR repeat 163 188 IPR002885 -
Lsi10g00864 1044 PRINTS FAD-dependent pyridine nucleotide reductase signature 522 541 - -
Lsi10g00864 1044 PRINTS FAD-dependent pyridine nucleotide reductase signature 625 643 - -
Lsi10g00864 1044 PRINTS FAD-dependent pyridine nucleotide reductase signature 814 836 - -
Lsi10g00864 1044 PRINTS FAD-dependent pyridine nucleotide reductase signature 686 704 - -
Lsi10g00864 1044 PANTHER NADH DEHYDROGENASE 456 1044 IPR045024 GO:0003954|GO:0006116
Lsi10g00864 1044 SMART efh_1 846 874 IPR002048 GO:0005509
Lsi10g00864 1044 ProSitePatterns EF-hand calcium-binding domain. 855 867 IPR018247 -
Lsi10g00864 1044 Gene3D Tetratricopeptide repeat domain 111 246 IPR011990 GO:0005515
Lsi10g00864 1044 SUPERFAMILY FAD/NAD(P)-binding domain 519 738 IPR036188 -
Lsi10g00864 1044 SUPERFAMILY FAD/NAD(P)-binding domain 680 839 IPR036188 -
Lsi10g00864 1044 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 294 328 IPR002885 -
Lsi10g00864 1044 Gene3D - 510 891 - -
Lsi10g00864 1044 Gene3D - 892 1043 - -
Lsi10g00864 1044 Gene3D Tetratricopeptide repeat domain 265 428 IPR011990 GO:0005515
Lsi10g00864 1044 SUPERFAMILY EF-hand 800 890 IPR011992 -
Lsi10g00864 1044 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 431 465 IPR002885 -
Lsi10g00864 1044 PANTHER - 456 1044 - -
Lsi10g00864 1044 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 193 227 IPR002885 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00703 Lsi-Chr2:6289814 Lsi10g00864 Lsi-Chr10:12804487 0 dispersed
Lsi03g01915 Lsi-Chr3:30500017 Lsi10g00864 Lsi-Chr10:12804487 3.72E-07 dispersed
Lsi10g00864 Lsi-Chr10:12804487 Lsi02g01815 Lsi-Chr2:23933434 1.67E-06 dispersed
Lsi01g00349 Lsi-Chr1:3101829 Lsi10g00864 Lsi-Chr10:12804487 6.01E-13 wgd
Lsi10g00864 Lsi-Chr10:12804487 Lsi11g01519 Lsi-Chr11:23603900 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00864 K03885 - csv:101209855 1070.84