Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi10g00864 | ATGGCCCAACAAGGCAAGGTTCCTTCGATCTCCAACCAAGCTTGCATTCAGGACGAGGATGATCTAGGGTTTTTCGTCGGAGCAGCCGATATAAACCAATTCAAGGTTTTCTTTTTCATTATTTTCAATTCAATTATTCTATGGCACGACGCACCCCGGGCTACTCTGATTATCTCCATGACGGTGATAGCCCCATTGCTCGTGCTAGAGTGTCGCCGTTTAGTGTTGCAGATTACTTCCCCCAAGATTACTTCCCCCAAGGCCTCACTAGCCCTTGGTTTAGACGCCCACGTCTTCTCTCTTGTTCTCAAGTCCTGCACCGCCATCCGACGACCCCATTTGGGCACCTCCATCCATGCCCATTCTGCTAAATCCTCCCTGCTCTCAAGCCCATTTATTGCTTGTGCCTTAGTTGACATGTATGGAAAATCCTTGTCCGTCTCACTTGCACGAAAACTGTTCGACGAAATTCCCCATAGAAGTGTCGTCGTGTGGAATGCCATGTTATCACTATACGCGCACTCAAACATGTTATTTGATGGTTTGCGGTTGTTTGAAGCTATGGATGTGCCACCAAATACTTCGTCCTTCAACCCAATAATTGCAGCGTTGTCGGAATTGGAAGATGGATTCAAGGCCATTGCTTTCTATCGGAAAATGCAACATTGTGGGTTGAAGCCTAATTTAATTACCCTTCTTGCTTTATTACCTGCAAGTGTTGGAGTTGCGGCTTTGGACTTGATTAAACAAATTCATGGCTTTGCCATGAGAAGTGATATCGGTTGTCATCCGCAGTTAAGCAGTGGCCTTGTTGAGGCATATGGAAGATGCGGATGTCTCTCTTATGCACACCATGTGTTCGATAATATGACGGAAAGAGATGTAGTTGCATGGAGCAGTTTAATATCAGCACATGCTCTTCATGGGGAAGCCAGAACTGCTTTAAACATCTTTAAACAAATGGAATTGGGTAAAGTGCAGCCTGATGAGATTACATTTATAGGGGTGTTGAAGGCTTGTAGTCACGTGGGGTTAGCTGATGAAGCATTGGATTATTTTAGCCGTATGCAGAGAGATTATGGTCTACAAGCAAGCAGTGATCATTATTCTTGTCTAGTAGATGTATTGAGCAGAGCAGGGAGATTATACGAGGCGTATGACATTATTCGTGAGATGCCAGTGAGGGTGACGGCTAAAGCTTGGGGTGCCCTTCTTGGGGCTTGTCGAATTTATGGAGAGTTAGAGCTGGCGGAGATTGCAGGGAAGGCTTTGTTTGAGATAGAGCCTGAGAATGCTGCCAATTATGTGCTGTTGGCTAAAATGTATGCAAGTGTAGGGAGACATGAGGAGGCTCAAAGAATGAGAAGGGAAATGAAAGAGAGGAGAGTTAAGGTAGTACCTGGAATTTATGGATGTAATTGCGTTTATAATGGAGAATATGAATATAACATTGCTATCATCTGCAGTGGAGGTGGATTGGTGGCAGCTACTAATGGCAGATCTCTGTATCATTCTGCATATGCTGATGCAGTCCAACATGATGGTGACTGCAAGAAGAAGAAAGTGGTGGTGCTTGGAACAGGATGGGCTGGCACCAGTTTTTTGAAGAATCTCAAGAGTTCATCTTATGATGTTCATGTTATTTCTCCTCATAATTACTTTGCTTTCACCCCTTTGCTTCCTAGTGTCACATGTGGGACCGTTGAAGCACGCAGCATTGTCGAACCGATTCGTAGTATTACAAGGAAGAAAGGTCTGCATATTGAATTTAGGGAAGCTGAGTGCTATAAGATTGATGCAGAGAAGAAAAAGGTGTTCTGTCGATCAAGTCAAGACACAAATTTGGGTGGCAGAGAAGAATTTTCTGTTGATTATGACTACCTGATTATAGCCATGGGAGCTAAATCCAACACTTTCAACACACCTGGAGTTGAGGAAAATGCTCACTTCTTGAAGGGAGTGGAAGATGCTCAGAGGATTCGTCAGACCGTAATCGATTGTTTCGAGCGAGCCAGCCTTCCAAATCTAAGTGAAGAAGAGAAGAAGAGAACTCTTCACTTTGTAATAGTTGGAGGTGGTCCAACTGGGGTGGAATTTGCAGCAGAGCTTCATGACTTTGCAGTTGAGGATTTAGCAGGGTTGTATCCTTCATTGAAAAACTACGTGAAAATAACCCTCCTAGAGGCAGGAGATCATATTTTGAACATGTTTGACAAGAGGATTACTACCTTTGCTGAAGAAAAATTTCAAAGAGATGGGATTGAACTAAAAACTGGTTCCATGGTTGTAAAAGTAACTGATAAGGAAATCTCCACAAAAGAAAGAGCAACCGGTGAATTTGTGTCTGTTCCTTATGGAATGGTTGTCTGGTCTACCGGCATCGGCCCTCGTCCTCAAGTTGTTGATTTCATGAAGCAGATTGGTCAGACTAACAGAAGAGCTTTGGCAACTGATGAGTGGCTAAGGGTTGAAGGATGTGATGGTGTCTATGCTCTTGGTGATTGTGCCACTGTTAATCAAAGAAGAGTCATGGAAGATATTGCAGCAATATTCAGCAAGGCAGACAAGGACAAGTCAGGAACTTTAGCCCTGCAAGAGTTTCAAGAAGTGGTAGGTGATATTTGTGAGAGGTACCCTCAAGTAGAGATCTATCTGAAGAAGAAGCAGATGAAGAACTTTGCAGCTTTGTTGAAGAAGACGCAATCCGACGCACAGAAACAGTTGACCGAACTGGATATCGAAACCTTTAAGACTTTACTTTCTGAAGTCGATTCTCAGATGAAAAATCTCCCTGCTACTGCTCAAGTTGCTGCTCAACAAGGTGAATATCTTGCAAGCTGCTTTAACCGGATGGAACGGTGTGAAAAGTACCCCGAAGGCCCTCTCCGATTTCGAGGGACAGGACGCCACAGGTTTCACCCTTTCAGGTATAAGCATTTTGGGCAGTTTGCTCCTCTTGGGGGAGAACAAACTGCAGCTCAACTTCCTGGAGATTGGATCTCAATTGGTCATAGCACCCAGTGGCTTTGGTACTCTGTGTATGCCAGCAAGCTAGTAAGTTGGCGCACAAGGATTCTGGTCATGTCAGATTGGGGTAGAAGATTCATATTTGGCAGAGATTCAAGCAGAATCTGA | 3135 | 44.11 | MAQQGKVPSISNQACIQDEDDLGFFVGAADINQFKVFFFIIFNSIILWHDAPRATLIISMTVIAPLLVLECRRLVLQITSPKITSPKASLALGLDAHVFSLVLKSCTAIRRPHLGTSIHAHSAKSSLLSSPFIACALVDMYGKSLSVSLARKLFDEIPHRSVVVWNAMLSLYAHSNMLFDGLRLFEAMDVPPNTSSFNPIIAALSELEDGFKAIAFYRKMQHCGLKPNLITLLALLPASVGVAALDLIKQIHGFAMRSDIGCHPQLSSGLVEAYGRCGCLSYAHHVFDNMTERDVVAWSSLISAHALHGEARTALNIFKQMELGKVQPDEITFIGVLKACSHVGLADEALDYFSRMQRDYGLQASSDHYSCLVDVLSRAGRLYEAYDIIREMPVRVTAKAWGALLGACRIYGELELAEIAGKALFEIEPENAANYVLLAKMYASVGRHEEAQRMRREMKERRVKVVPGIYGCNCVYNGEYEYNIAIICSGGGLVAATNGRSLYHSAYADAVQHDGDCKKKKVVVLGTGWAGTSFLKNLKSSSYDVHVISPHNYFAFTPLLPSVTCGTVEARSIVEPIRSITRKKGLHIEFREAECYKIDAEKKKVFCRSSQDTNLGGREEFSVDYDYLIIAMGAKSNTFNTPGVEENAHFLKGVEDAQRIRQTVIDCFERASLPNLSEEEKKRTLHFVIVGGGPTGVEFAAELHDFAVEDLAGLYPSLKNYVKITLLEAGDHILNMFDKRITTFAEEKFQRDGIELKTGSMVVKVTDKEISTKERATGEFVSVPYGMVVWSTGIGPRPQVVDFMKQIGQTNRRALATDEWLRVEGCDGVYALGDCATVNQRRVMEDIAAIFSKADKDKSGTLALQEFQEVVGDICERYPQVEIYLKKKQMKNFAALLKKTQSDAQKQLTELDIETFKTLLSEVDSQMKNLPATAQVAAQQGEYLASCFNRMERCEKYPEGPLRFRGTGRHRFHPFRYKHFGQFAPLGGEQTAAQLPGDWISIGHSTQWLWYSVYASKLVSWRTRILVMSDWGRRFIFGRDSSRI | 1044 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 12804487 | 12814797 | - | Lsi10G008640.1 | Lsi10g00864 | 672421 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi10g00864 | 1044 | Pfam | E motif | 411 | 469 | IPR046848 | - | |
Lsi10g00864 | 1044 | Pfam | Pyridine nucleotide-disulphide oxidoreductase | 520 | 845 | IPR023753 | GO:0016491 | |
Lsi10g00864 | 1044 | Pfam | PPR repeat family | 293 | 341 | IPR002885 | - | |
Lsi10g00864 | 1044 | ProSiteProfiles | EF-hand calcium-binding domain profile. | 842 | 877 | IPR002048 | GO:0005509 | |
Lsi10g00864 | 1044 | TIGRFAM | PPR: pentatricopeptide repeat domain | 296 | 330 | IPR002885 | - | |
Lsi10g00864 | 1044 | TIGRFAM | PPR: pentatricopeptide repeat domain | 196 | 228 | IPR002885 | - | |
Lsi10g00864 | 1044 | Pfam | PPR repeat | 368 | 393 | IPR002885 | - | |
Lsi10g00864 | 1044 | Pfam | PPR repeat | 163 | 188 | IPR002885 | - | |
Lsi10g00864 | 1044 | PRINTS | FAD-dependent pyridine nucleotide reductase signature | 522 | 541 | - | - | |
Lsi10g00864 | 1044 | PRINTS | FAD-dependent pyridine nucleotide reductase signature | 625 | 643 | - | - | |
Lsi10g00864 | 1044 | PRINTS | FAD-dependent pyridine nucleotide reductase signature | 814 | 836 | - | - | |
Lsi10g00864 | 1044 | PRINTS | FAD-dependent pyridine nucleotide reductase signature | 686 | 704 | - | - | |
Lsi10g00864 | 1044 | PANTHER | NADH DEHYDROGENASE | 456 | 1044 | IPR045024 | GO:0003954|GO:0006116 | |
Lsi10g00864 | 1044 | SMART | efh_1 | 846 | 874 | IPR002048 | GO:0005509 | |
Lsi10g00864 | 1044 | ProSitePatterns | EF-hand calcium-binding domain. | 855 | 867 | IPR018247 | - | |
Lsi10g00864 | 1044 | Gene3D | Tetratricopeptide repeat domain | 111 | 246 | IPR011990 | GO:0005515 | |
Lsi10g00864 | 1044 | SUPERFAMILY | FAD/NAD(P)-binding domain | 519 | 738 | IPR036188 | - | |
Lsi10g00864 | 1044 | SUPERFAMILY | FAD/NAD(P)-binding domain | 680 | 839 | IPR036188 | - | |
Lsi10g00864 | 1044 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 294 | 328 | IPR002885 | - | |
Lsi10g00864 | 1044 | Gene3D | - | 510 | 891 | - | - | |
Lsi10g00864 | 1044 | Gene3D | - | 892 | 1043 | - | - | |
Lsi10g00864 | 1044 | Gene3D | Tetratricopeptide repeat domain | 265 | 428 | IPR011990 | GO:0005515 | |
Lsi10g00864 | 1044 | SUPERFAMILY | EF-hand | 800 | 890 | IPR011992 | - | |
Lsi10g00864 | 1044 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 431 | 465 | IPR002885 | - | |
Lsi10g00864 | 1044 | PANTHER | - | 456 | 1044 | - | - | |
Lsi10g00864 | 1044 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 193 | 227 | IPR002885 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi02g00703 | Lsi-Chr2:6289814 | Lsi10g00864 | Lsi-Chr10:12804487 | 0 | dispersed | |
Lsi03g01915 | Lsi-Chr3:30500017 | Lsi10g00864 | Lsi-Chr10:12804487 | 3.72E-07 | dispersed | |
Lsi10g00864 | Lsi-Chr10:12804487 | Lsi02g01815 | Lsi-Chr2:23933434 | 1.67E-06 | dispersed | |
Lsi01g00349 | Lsi-Chr1:3101829 | Lsi10g00864 | Lsi-Chr10:12804487 | 6.01E-13 | wgd | |
Lsi10g00864 | Lsi-Chr10:12804487 | Lsi11g01519 | Lsi-Chr11:23603900 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi10g00864 | K03885 | - | csv:101209855 | 1070.84 |