Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00876 ATGGGGAGCTGTTTGTCTACTGGCAATCAGAATAGTTGCAATGGTGGAAGGAATGGAGAGAGAATTTTTGGATCCTGTTTGGGAATTGGGATTGAAAGAAAGAGAACATTCTCAGATCATATTTTTTCTCTGCAGCATTTGAATTCTGTATCTAATAGACTTGTTTATAATGGGAAGACTCGAAATTCTTGTATTTTCACTCAGCAGGGTCGAAAGGGTATAAACCAGGACGCCATGGTTGTATGGGAAGACTTCATATCAGATGGTGCAATTTTCTGTGGGGTATTCGATGGTCACGGTCCTCATGGTCATGTCGTTGCACGAAAAGTTAGAGATGTTCTGCCAAGAAAGCTAGTGTCATTCTGGCAGTCATCTCAGTTGAAGCATAATAGATCAGATAGAACTTCTTGTCTCCCGTGGAGTCGGAAGGATTCAGCAGATGGTGAAGGACAGGACATAGATGGCTCACAGGAGGATAAATCAAGTTCTTTATGGAGAAGAGCTTTCCTCAAATCATATAAAGCCATGGATAAGGAGCTCAAGTCTCATCCCAAATTGGACTGCTTCTGTAGTGGCAGTACTGCGGTCACTCTAGTGAAGCAGGGCTCCGATCTATTTGTGGGAAGTATTGGGGATTCTCGAGCGATTCTTGGATCTAAAGACAGCAGTGATTCCCTTGTAGCAACCCAATTGACAGTGGATCTAAAGCCTGATTTACCCAGAGAAGCGGAAAGGATAAAGAAGTGTAAAGGAAGGGTGTTTGCATTGCACGATGAGCCAGAAGTGCCAAGAGTATGGCTGCCATTTGACAATGCGCCTGGATTAGCTATGGCTCGAGCATTCGGCGACTTCTGTTTGAAGGACTATGGAGTTATCTCTATCCCCGAGTTCTCACACCGCATGCTTACAAATAATGATCTGTTTGTTGTCCTTGCTTCAGATGGGGTTTGGGACGTATTGAGCAATGAAGAGGTGGTTGAGATAGTGTATTCTGCCTCAACTCGGTCATCGGCAGCCCGAATGGTGGTAGACTCAGCTGCTCGTGAGTGGAAACTCAAGTACCCTACTTCGAAAATGGATGACTGTGCTGTCGTTTGCCTATTCTTGGACGGGAAAATGGATTCAGAATCAGAAAATGAAGAACAAGCTTCTACTGCAACTCTTCAAACCAACCAAATGGGTAACACCGCAGAATCAGATGATGAGCAGAGGTCTGAGCCAAGTTTGCAAAGGAACTATACGATCCGATCGTCAGAAGAAAAAGACCAAATTGGAGGATTATCTTCTTCACATAATGAAGAGAATGAAGAATCAATTTCTGCTGAAGATGATAATTGGTTGGGACTGGAGGGTGTAACAAGAGTAAACTCTTTGGTTCAACTCCCTAGATTTTCTTGA 1398 43.71 MGSCLSTGNQNSCNGGRNGERIFGSCLGIGIERKRTFSDHIFSLQHLNSVSNRLVYNGKTRNSCIFTQQGRKGINQDAMVVWEDFISDGAIFCGVFDGHGPHGHVVARKVRDVLPRKLVSFWQSSQLKHNRSDRTSCLPWSRKDSADGEGQDIDGSQEDKSSSLWRRAFLKSYKAMDKELKSHPKLDCFCSGSTAVTLVKQGSDLFVGSIGDSRAILGSKDSSDSLVATQLTVDLKPDLPREAERIKKCKGRVFALHDEPEVPRVWLPFDNAPGLAMARAFGDFCLKDYGVISIPEFSHRMLTNNDLFVVLASDGVWDVLSNEEVVEIVYSASTRSSAARMVVDSAAREWKLKYPTSKMDDCAVVCLFLDGKMDSESENEEQASTATLQTNQMGNTAESDDEQRSEPSLQRNYTIRSSEEKDQIGGLSSSHNEENEESISAEDDNWLGLEGVTRVNSLVQLPRFS 465
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 12985503 12988787 - Lsi10G008760.1 Lsi10g00876 672433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00876 465 CDD PP2Cc 68 369 IPR001932 -
Lsi10g00876 465 MobiDBLite consensus disorder prediction 376 445 - -
Lsi10g00876 465 MobiDBLite consensus disorder prediction 380 398 - -
Lsi10g00876 465 MobiDBLite consensus disorder prediction 408 434 - -
Lsi10g00876 465 Pfam Protein phosphatase 2C 156 346 IPR001932 -
Lsi10g00876 465 SMART PP2C_4 51 367 IPR001932 -
Lsi10g00876 465 ProSiteProfiles PPM-type phosphatase domain profile. 62 369 IPR001932 -
Lsi10g00876 465 PANTHER PROTEIN PHOSPHATASE 2C 52-RELATED 1 457 - -
Lsi10g00876 465 SUPERFAMILY PP2C-like 57 371 IPR036457 -
Lsi10g00876 465 MobiDBLite consensus disorder prediction 135 159 - -
Lsi10g00876 465 Gene3D - 49 371 IPR036457 -
Lsi10g00876 465 PANTHER ALPHABET, ISOFORM E-RELATED 1 457 - -
Lsi10g00876 465 MobiDBLite consensus disorder prediction 133 159 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi10g00876 Lsi-Chr10:12985503 Lsi11g00609 Lsi-Chr11:6480557 2.21E-100 dispersed
Lsi01g01588 Lsi-Chr1:14071924 Lsi10g00876 Lsi-Chr10:12985503 6.73E-114 transposed
Lsi04g01437 Lsi-Chr4:22091024 Lsi10g00876 Lsi-Chr10:12985503 8.83E-91 transposed
Lsi11g00963 Lsi-Chr11:15029915 Lsi10g00876 Lsi-Chr10:12985503 1.69E-150 transposed
Lsi10g00876 Lsi-Chr10:12985503 Lsi11g01535 Lsi-Chr11:23687834 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00876 - - cmax:111469610 815.068