Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00883 ATGTCCAATTTCAAATCCAACTTAAGAATTGATCAACATATGGATGAAGATAAAGATACTGATCACAATGAGTTTCAAGGATGGAGTTTTCCTCAAAGACAAGGGAAGCCACTGCCGGAACAAACTTCCGTTTCACCTCCGCCTTCTAAGAAAATCCGTGACCCTGAAAATCATGACCCAATTCAACCATTGGATTCAGTTTCTCATCATTCATTTCCTTTCTTGAATCCAGCCTCCTCTGTTTCTCAAGCTTCTTCCCCTTCCTCTACAAGAACTTTATTTCCTTTTGCTTTTGAACCATCTCAATTTCCCCATCAATTCAAAACAGACCCTGTTGCACCTACGGTTCATCATCGTCCATCAGTTCTGCCTCCGCATAATCAGCAACCGCAGTTGGCGCCACTTGCTTCAACCCAATATGGATTTGGCTACCCACCCTACTTCATGGGAGAGTTCGCATCGTTTCAACAACAACAACAACAACATCAGCAATTTCTTCAGTATTGGAATGAGTCTCTTGATTTGAACTCAAGAGCAGGGTTTAGGCCTCAAGTGCGGCCTTTAAACGCTACAAAGCTATACAGAGGAGTGAGGCAGAGACATTGGGGGAAATGGGTAGCTGAGATTCGTCTTCCTCGAAACAGGAATCGTCTCTGGCTTGGCACATTTGACACTGCAGAAGATGCTGCGTTAGCCTACGATCGAGAGGCTTTCAAATTGAGAGGAGAGAATGCAAGGCTTAATTTTCCTGAACTGTTTCTGAATAAAGATAAAGAAGAAGAAGAAGCCTCACAAACTTCTGCTCCTCAACAGGAACTAGACAATAACAATCTTGACAATGACATAGAATTAGAGTCCAATAATGAGGCTGTGACAGAGGAAAACATACAAGAAGAAGAGGGTATTTCAAAGTCGCAAGAAATAGTTTGGAGAGAAATGGCAGAGGCTTGGTTAAACGCGATGCCAGCCGGTTGGGGCCCTGGTAGCCCTGTGTGGGATGATTTAGACACCACCAATAACCTGCTGCTGCAGCCACAGCTTACTTTTGGTAATTCAATTCAGCAAGAATCATTTGGCTCTGATCTTCAGAGTCAGCCATTCAACTTAACATCAGCTTCACCTTCTTCTTCATCCTGCCCCATGAAGCCTTTCTTTCTCAAGGATGAAGATTAA 1173 43.39 MSNFKSNLRIDQHMDEDKDTDHNEFQGWSFPQRQGKPLPEQTSVSPPPSKKIRDPENHDPIQPLDSVSHHSFPFLNPASSVSQASSPSSTRTLFPFAFEPSQFPHQFKTDPVAPTVHHRPSVLPPHNQQPQLAPLASTQYGFGYPPYFMGEFASFQQQQQQHQQFLQYWNESLDLNSRAGFRPQVRPLNATKLYRGVRQRHWGKWVAEIRLPRNRNRLWLGTFDTAEDAALAYDREAFKLRGENARLNFPELFLNKDKEEEEASQTSAPQQELDNNNLDNDIELESNNEAVTEENIQEEEGISKSQEIVWREMAEAWLNAMPAGWGPGSPVWDDLDTTNNLLLQPQLTFGNSIQQESFGSDLQSQPFNLTSASPSSSSCPMKPFFLKDED 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 13136227 13137399 + Lsi10G008830.1 Lsi10g00883 672440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00883 390 MobiDBLite consensus disorder prediction 357 390 - -
Lsi10g00883 390 PRINTS Ethylene responsive element binding protein signature 194 205 IPR001471 GO:0003700|GO:0006355
Lsi10g00883 390 PRINTS Ethylene responsive element binding protein signature 216 232 IPR001471 GO:0003700|GO:0006355
Lsi10g00883 390 Pfam AP2 domain 194 242 IPR001471 GO:0003700|GO:0006355
Lsi10g00883 390 ProSiteProfiles AP2/ERF domain profile. 193 250 IPR001471 GO:0003700|GO:0006355
Lsi10g00883 390 MobiDBLite consensus disorder prediction 1 69 - -
Lsi10g00883 390 MobiDBLite consensus disorder prediction 9 24 - -
Lsi10g00883 390 CDD AP2 192 252 IPR001471 GO:0003700|GO:0006355
Lsi10g00883 390 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 22 272 - -
Lsi10g00883 390 MobiDBLite consensus disorder prediction 357 380 - -
Lsi10g00883 390 MobiDBLite consensus disorder prediction 25 48 - -
Lsi10g00883 390 MobiDBLite consensus disorder prediction 258 278 - -
Lsi10g00883 390 Gene3D AP2/ERF domain 193 251 IPR036955 GO:0003700|GO:0006355
Lsi10g00883 390 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 285 387 - -
Lsi10g00883 390 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF053 285 387 - -
Lsi10g00883 390 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF053 22 272 - -
Lsi10g00883 390 MobiDBLite consensus disorder prediction 105 131 - -
Lsi10g00883 390 SUPERFAMILY DNA-binding domain 193 251 IPR016177 GO:0003677
Lsi10g00883 390 SMART rav1_2 193 256 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02353 Lsi-Chr4:30737737 Lsi10g00883 Lsi-Chr10:13136227 2.92E-33 dispersed
Lsi08g01358 Lsi-Chr8:21900887 Lsi10g00883 Lsi-Chr10:13136227 1.30E-24 dispersed
Lsi10g00883 Lsi-Chr10:13136227 Lsi03g01699 Lsi-Chr3:28310174 2.67E-22 dispersed
Lsi10g00883 Lsi-Chr10:13136227 Lsi11g01541 Lsi-Chr11:23747887 3.35E-76 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26051 PF00847 AP2 4.80E-13 CL0081 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00883 - - cpep:111795746 560.836