Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00889 ATGCAGCTCCTCCTCTTTCGCCGTAGTTTTCGGCTCATTAGAGCTTTGTTCTGTGCCGCGGCTGTGCTTGAGTGGTTCACGGCGGCGGCTCAGCTCCAACACCGTGTACCGAATCTACATTGGCTTCCAGCCACCGCCACGTGGTATGGAAGCCCCGAGGGAGACGGTAGCGACGGTGGAGCATGTGGGTATGGTAATTTAGTGGATGTGAAGCCTCTAAAGGCCAGAGTTGGGGCTGTGAGTCCAGTTCTGTTTAGAAATGGTGAAGGGTGTGGAGCCTGTTACAAAGTGAAGTGTTTAGACCAGAACATTTGCTCTAGACGAGCAGTGACTATAATCGTCACCGACGAGTGCCCCGGTGGGTATTGTTCCAATGGCAATACTCACTTCGATCTCAGCGGTGCCGCTTTTGGCCGTATGGCCATTACCGGCGAAGGTGGGCAGCTCAGAAACCGAGGCGAAATCCCAGTAATTTACCGACGAACTCCGTGTAAGTACCCAGGCAAGAACATTGCCTTCCATGTCAATGAAGGTTCGACAGATTACTGGCTCTCACTTTTAGTTGAATTCGAGGATGGGGATGGAGACATCGGTGCAATGCAAATAAAAGAAACAAATTCAGGGGAATGGCTGGATATGAACCATCTATGGGGGGCAAATTGGTGTATCATTGGTGGGCCATTAAAAGGCCCATTCTCAGTGAGATTAACAACATTATCTACAGGAAGAACCCTCTCAGCAAGGGATATAATCCCAAGGAATTGGTCTCCCAAAGCCACTTACACTTCCCGCCTTAATTTCTTCTCTTGA 810 49.88 MQLLLFRRSFRLIRALFCAAAVLEWFTAAAQLQHRVPNLHWLPATATWYGSPEGDGSDGGACGYGNLVDVKPLKARVGAVSPVLFRNGEGCGACYKVKCLDQNICSRRAVTIIVTDECPGGYCSNGNTHFDLSGAAFGRMAITGEGGQLRNRGEIPVIYRRTPCKYPGKNIAFHVNEGSTDYWLSLLVEFEDGDGDIGAMQIKETNSGEWLDMNHLWGANWCIIGGPLKGPFSVRLTTLSTGRTLSARDIIPRNWSPKATYTSRLNFFS 269
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 13169875 13172063 - Lsi10G008890.1 Lsi10g00889 672446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00889 269 Pfam Lytic transglycolase 79 158 IPR009009 -
Lsi10g00889 269 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 182 263 IPR007117 -
Lsi10g00889 269 Gene3D - 27 165 IPR036908 -
Lsi10g00889 269 SUPERFAMILY PHL pollen allergen 169 263 IPR036749 -
Lsi10g00889 269 SUPERFAMILY Barwin-like endoglucanases 40 168 IPR036908 -
Lsi10g00889 269 PRINTS Expansin/Lol pI family signature 40 55 IPR007118 GO:0005576
Lsi10g00889 269 PRINTS Expansin/Lol pI family signature 152 168 IPR007118 GO:0005576
Lsi10g00889 269 PRINTS Expansin/Lol pI family signature 210 224 IPR007118 GO:0005576
Lsi10g00889 269 PRINTS Expansin/Lol pI family signature 81 99 IPR007118 GO:0005576
Lsi10g00889 269 PRINTS Expansin/Lol pI family signature 249 263 IPR007118 GO:0005576
Lsi10g00889 269 PRINTS Expansin/Lol pI family signature 58 76 IPR007118 GO:0005576
Lsi10g00889 269 Gene3D - 166 268 IPR036749 -
Lsi10g00889 269 SMART dpbb_1 77 159 IPR007112 -
Lsi10g00889 269 Pfam Expansin C-terminal domain 171 252 IPR007117 -
Lsi10g00889 269 PANTHER EXPANSIN-LIKE PROTEIN B1 18 268 - -
Lsi10g00889 269 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 59 169 IPR007112 -
Lsi10g00889 269 PANTHER EXPANSIN-B3 18 268 - -
Lsi10g00889 269 PRINTS Major pollen allergen Lol pI signature 119 134 IPR005795 GO:0005576|GO:0019953
Lsi10g00889 269 PRINTS Major pollen allergen Lol pI signature 79 90 IPR005795 GO:0005576|GO:0019953
Lsi10g00889 269 PRINTS Major pollen allergen Lol pI signature 141 156 IPR005795 GO:0005576|GO:0019953
Lsi10g00889 269 PRINTS Major pollen allergen Lol pI signature 189 204 IPR005795 GO:0005576|GO:0019953
Lsi10g00889 269 PRINTS Major pollen allergen Lol pI signature 173 188 IPR005795 GO:0005576|GO:0019953
Lsi10g00889 269 PRINTS Major pollen allergen Lol pI signature 239 256 IPR005795 GO:0005576|GO:0019953
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi10g00889 Lsi-Chr10:13169875 Lsi11g00969 Lsi-Chr11:15332481 7.61E-37 dispersed
Lsi05g00025 Lsi-Chr5:392278 Lsi10g00889 Lsi-Chr10:13169875 1.40E-27 transposed
Lsi05g02205 Lsi-Chr5:28622324 Lsi10g00889 Lsi-Chr10:13169875 7.50E-79 transposed
Lsi10g00889 Lsi-Chr10:13169875 Lsi11g01543 Lsi-Chr11:23762422 1.73E-137 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00889 K20628 - csv:101202998 510.76