Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi10g00900 | ATGGGCTGCATCTGTTCTAAGGTTTTAGCTGATGAGTGTAGTGACAATGAACATGACATCTCCAAAAGAGTTCATTCCTCTATTAAACACCTCTCTGAATTAAAAACATCAAGATCTGGCTCTCAGATTTGGGAGAAAGATAGACTGAATTGTAGTGATGTTACGGTTATGTTGTTCGATACGACGGCGAACGGTTCTCTATGCGCACACGGCAAGCTTTCTAATGAGAGGAAGAAGACAGACATCCCTGATGTTGCCATTATCAACCATCCATTTATGGGAAAGATTCCGAAGACTACCGAGGCCGAGCAAGTCGCTGCCGGGTGGCCGAGTTGGCTGGCTGTGGTGGCTGGTGAAGCTATCAAAGGATGGTTGCCAAAACGTGCAAATAACTTCATCAAGTTAGAGAAAATTGGCCAAGGAACTTATAGCAGTGTATATAAAGCTCGTGATATCATTCAAGATAAAGTTGTGGCCTTGAAAAGGATCAGATTTGACAATCAAGATGCTGAGAGTATCAAGTTTATGGCAAGGGAAATCCTTGTTTTGAGAAGGCTTGATCATCCAAATATAATTAAGTTGGAAGGTTTGATCACATCACAAACATCATGTACCATGTACCTTGTTTTTGAATATATGGAACATGATCTTACCGGACTCGCATCACGGCCTGGTGCGTCGTTCACTGAACCACAGATGAAGTGTTACATGAAGCAACTTTTGAGTGGACTTGATCATTGTCACAGTAATGGGGTTCTACATAGAGACATAAAAGGCTCAAATCTTCTTATTGACAACAATGGCATTTTAAAGATAGCAGATTTTGGGTTGGCTGTTTTCTTTGATTCACATTCAACGGTTCAGATGACGAGCCGTGTAATAACTCTCTGGTATCGACCACCGGAACTTTTACTTGGAGCGTCTAAATATGGAGTTGAAGTTGATTTATGGAGTGCTGGTTGCATTCTAGGAGAATTATATACTGGCAAGCCTATCTTGCCAGGAAAAACAGAGTTCTTTACGACAAGGCCCTTTCCAAGCGATCCTTCAAATTTGCCAAAATACCCTCCAAGCAAAGAGATTGATTCAAAACTGCGTGAAGAGGAAGCAAGAAGGCAACAAGGAGTAGGTGGTGGGAGAAGCCAAGAAGCAAAAGGACTGAAGCAATCTAGAGTAGTACCTGCTGCAAGGGCTAATGCTGAGTTGGTTATTTCATTACTGAGAAAACAAAGTCGTTCGAGCGCAAAGTACCGGAATGAAACGTGTTCTTACGGTTTGGTGTCCAAAAGAACCTCAAATTCAGGACCTATAGCTCAGGGACCAAGATTTACAAACTCCAAAAAGGAAACAAAACATGTTTCTATGGTTTCTAGTGAATGTTTAATGTCATCTGGTCCTATTGAATTTGTTTCTTACAAATATGTCAGAGAAAGAAATGAAGTTTCAAAGCCAGAATCAATGAACCAAGACAGAAATCTTCCTCTTCTATCCAGTTCTTCTGCTGAAGAGTCATCCATCAAAAAGCTGAACAAAGACAAAGTTGATATGAAGAAAGTTACAAATTCTTATCTTCAGTCTGACGCTCTCCCAACTGAGCTATCCCCGCTTGATCATTCAAATGCAAACCAAATCCTTAACTCCTTTTATCTAATCAATTATGATTCTAGTCGTCGACATGGGTTGAAAGAGAAAGTGGGTATTTTTGACTCCTCAAACAGCCGGCACAGGCCGTCTGAATATCATAATCCTTTTAACTATGACGAAAATACATTGAAAGGGGATTCGAAAACTTTCTGGGTTTTTGGGGTTTTTTCAAATTCTGGAAGATTGGACTTTAGAAATTTGTTCCAGTGTTTTTTCTCAACTTCTGCGGTTTGGGGTTCAAAATCGCGTGTTTTGAAAGTCTTCTCTGAATTGGTTGGGTATATAGGAAGTTTCGTTATTAGATTAGCCACTGAGAAATTTCCTTCACGAAAGGCTTCACGAGATAATTTATTAAGAAAAGGAGAGGATATGCGATTGAATTCTGTGAAAAGAGACGAAGATGTTCGAATAAATTCTTCACAGAGAGCAGATAGTATTCGATCAAAGGTGAAAACAGATGGTGGTGACATGAAACTTGTTTATTTGGATAAGAGAGTCAACGGCTCTAACAGGGTACACGATGATCAAATTGAAAAAAAGAAGAGGGAGAGGTTGGAAGCTGCCATTTCTGCTAATTATCCTGGAAAAGGAAGCATTCCAAAAGCTATGGAGGCACAGCAAGTTGCAGCTGGTTGGCCAAGCTGGCTCTCCTCTGTGGCCGGTGAAGCGCTCGAAGGATGGCTGCCACGAAAAGCCGAAACTTTCGAGAAACTCGACAAGATAGGACAGGGTACATATAGTAGTGTTTACAAGGCTCGTGATATCATTCACAATAAACTAGTCGCTCTAAAACGAGTTCGATTCGATAATCTTGACGTGGAGAGTGTCAAGTTTATGGCCCGGGAAATCCTTATCCTGCGTAGGCTTGATCATCCAAATGTTATAAAGTTGGAAGGCTTGATTACATCACCGCGATCATGTAGCTTGTACCTCGTTTTTGAGTATATGGAACATGATCTTACAGGGCTCGCATCTCGGCCTGGCGTCAAGTTCAGCGAACCACAGGTTAAATGCTATATGCAACAACTTCTAAGGGGACTGGATTATTGCCACAGTCGTGGTGTCCTCCACCGTGATATAAAGGGTTCAAATCTCCTAATTGACGACAATGGTATCTTGAAGATTGCTGATTTTGGATTAGCAAGTCCTTTTGACCCCCATAATCAAGTTCCCTTAACAAGTCGTGTAGTGACTCTATGGTACCGACCGCCCGAACTTCTGCTTGGAGCTTCTCATTATGGGGTTGCAGTGGACCTATGGAGTACCGGTTGCATACTAGCTGAGCTATATGCTGGGAAGCCCATCTTACCTGGAAAAACTGAGGTAGAACATCCTTATATCTACTCTGCTGCAGCGGTCGAACAGTTGCATAAGATATTTAAACTTTGTGGGTCGCCGCCTGAGAATTATTGGAAGAAATTGCAGTTACCTCATTCAACTGGATTTAAGACGGCTCAGCCATACCGACGTTGTATCGGGGAAATGCTCAAGGATTTCCCTTCTTCTGCGGTGGCTCTTGTGGATAAGTTACTTTCCGTAGATCCCGCTCATCGGGGAACTGCAGCTGCTGCTTTAAAGAGCGAGTTTTTTACGACTAAACCACTTGCTTGTGAGCCTACGAGTTTGCCCAAATATCCTCCCAGCAAAGAGATCGATGCAAAATTCCCCGGCTGCAGAAGGGAAAAACAAGTATTTGGGGCTGAGAAGATGCAGTCAAGAGTTGAGGGGAAAGACCCTAAAGATTATGTGGAAGGGAGGCGACCTAAAGAAGCTCACCTTAATCTTTCTCTAAATGCTAAGGATGAAGTAAACATGTTAACGCAGAAAAGGCAAGGTCATGTAAGTTTTAAGGGCCGGAGCGGAGTGTTGAATCCGCATGGGGACGAAACAGTTTCTGGTTTTTTGATTCCTCCGCCGAAACAAAATCAATCTGTCACAGAAATTTGCTCAGATACAGGCCGGATTTCACATTCAGGACCGCTAATTAGCAAACCAGATTGGATGAAATCTAGAAAGCAACTCGATGACCATTCGATGGCGCTTGATGGATCCAATCTCTCAGTATTATCCCGTTTAGTAGCAACAAGGTCTAATATATCTGATCATCCCTATGATAGACCGGGTCCATCACGATCAGAAGTAGGCAGATTGCCTGACTTCGTTAGGGATTCAGAGTCAATGAGAAAGCAGGACCGAATATTTTATACACACCGAGTTGCAGATTCATATCGAATAGAGAACGAAAAAGTTAGTGCAAAAGAACAGTCCCTGGTTCGTTCCTTCTTTCCTCTAGCTTTGTAG | 3945 | 42.28 | MGCICSKVLADECSDNEHDISKRVHSSIKHLSELKTSRSGSQIWEKDRLNCSDVTVMLFDTTANGSLCAHGKLSNERKKTDIPDVAIINHPFMGKIPKTTEAEQVAAGWPSWLAVVAGEAIKGWLPKRANNFIKLEKIGQGTYSSVYKARDIIQDKVVALKRIRFDNQDAESIKFMAREILVLRRLDHPNIIKLEGLITSQTSCTMYLVFEYMEHDLTGLASRPGASFTEPQMKCYMKQLLSGLDHCHSNGVLHRDIKGSNLLIDNNGILKIADFGLAVFFDSHSTVQMTSRVITLWYRPPELLLGASKYGVEVDLWSAGCILGELYTGKPILPGKTEFFTTRPFPSDPSNLPKYPPSKEIDSKLREEEARRQQGVGGGRSQEAKGLKQSRVVPAARANAELVISLLRKQSRSSAKYRNETCSYGLVSKRTSNSGPIAQGPRFTNSKKETKHVSMVSSECLMSSGPIEFVSYKYVRERNEVSKPESMNQDRNLPLLSSSSAEESSIKKLNKDKVDMKKVTNSYLQSDALPTELSPLDHSNANQILNSFYLINYDSSRRHGLKEKVGIFDSSNSRHRPSEYHNPFNYDENTLKGDSKTFWVFGVFSNSGRLDFRNLFQCFFSTSAVWGSKSRVLKVFSELVGYIGSFVIRLATEKFPSRKASRDNLLRKGEDMRLNSVKRDEDVRINSSQRADSIRSKVKTDGGDMKLVYLDKRVNGSNRVHDDQIEKKKRERLEAAISANYPGKGSIPKAMEAQQVAAGWPSWLSSVAGEALEGWLPRKAETFEKLDKIGQGTYSSVYKARDIIHNKLVALKRVRFDNLDVESVKFMAREILILRRLDHPNVIKLEGLITSPRSCSLYLVFEYMEHDLTGLASRPGVKFSEPQVKCYMQQLLRGLDYCHSRGVLHRDIKGSNLLIDDNGILKIADFGLASPFDPHNQVPLTSRVVTLWYRPPELLLGASHYGVAVDLWSTGCILAELYAGKPILPGKTEVEHPYIYSAAAVEQLHKIFKLCGSPPENYWKKLQLPHSTGFKTAQPYRRCIGEMLKDFPSSAVALVDKLLSVDPAHRGTAAAALKSEFFTTKPLACEPTSLPKYPPSKEIDAKFPGCRREKQVFGAEKMQSRVEGKDPKDYVEGRRPKEAHLNLSLNAKDEVNMLTQKRQGHVSFKGRSGVLNPHGDETVSGFLIPPPKQNQSVTEICSDTGRISHSGPLISKPDWMKSRKQLDDHSMALDGSNLSVLSRLVATRSNISDHPYDRPGPSRSEVGRLPDFVRDSESMRKQDRIFYTHRVADSYRIENEKVSAKEQSLVRSFFPLAL | 1314 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 13344499 | 13357503 | + | Lsi10G009000.1 | Lsi10g00900 | 672457 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi10g00900 | 1314 | ProSitePatterns | Protein kinases ATP-binding region signature. | 789 | 812 | IPR017441 | GO:0005524 | |
Lsi10g00900 | 1314 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 903 | 915 | IPR008271 | GO:0004672|GO:0006468 | |
Lsi10g00900 | 1314 | PANTHER | CELL DIVISION PROTEIN KINASE | 69 | 338 | - | - | |
Lsi10g00900 | 1314 | MobiDBLite | consensus disorder prediction | 480 | 504 | - | - | |
Lsi10g00900 | 1314 | Gene3D | Phosphorylase Kinase; domain 1 | 119 | 214 | - | - | |
Lsi10g00900 | 1314 | Gene3D | Phosphorylase Kinase; domain 1 | 770 | 865 | - | - | |
Lsi10g00900 | 1314 | PANTHER | BINDING PROTEIN, PUTATIVE-RELATED | 720 | 1257 | - | - | |
Lsi10g00900 | 1314 | SMART | serkin_6 | 783 | 1078 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi10g00900 | 1314 | SMART | serkin_6 | 132 | 414 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi10g00900 | 1314 | ProSiteProfiles | Protein kinase domain profile. | 132 | 427 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi10g00900 | 1314 | Pfam | Protein kinase domain | 133 | 337 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi10g00900 | 1314 | Pfam | Protein kinase domain | 783 | 1078 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi10g00900 | 1314 | MobiDBLite | consensus disorder prediction | 359 | 374 | - | - | |
Lsi10g00900 | 1314 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 252 | 264 | IPR008271 | GO:0004672|GO:0006468 | |
Lsi10g00900 | 1314 | SUPERFAMILY | Protein kinase-like (PK-like) | 127 | 339 | IPR011009 | - | |
Lsi10g00900 | 1314 | MobiDBLite | consensus disorder prediction | 486 | 504 | - | - | |
Lsi10g00900 | 1314 | ProSitePatterns | Protein kinases ATP-binding region signature. | 138 | 161 | IPR017441 | GO:0005524 | |
Lsi10g00900 | 1314 | ProSiteProfiles | Protein kinase domain profile. | 783 | 1078 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi10g00900 | 1314 | SUPERFAMILY | Protein kinase-like (PK-like) | 778 | 1083 | IPR011009 | - | |
Lsi10g00900 | 1314 | Gene3D | Transferase(Phosphotransferase) domain 1 | 866 | 1115 | - | - | |
Lsi10g00900 | 1314 | Gene3D | Transferase(Phosphotransferase) domain 1 | 215 | 414 | - | - | |
Lsi10g00900 | 1314 | CDD | STKc_CDK9_like | 783 | 1078 | - | - | |
Lsi10g00900 | 1314 | MobiDBLite | consensus disorder prediction | 343 | 391 | - | - | |
Lsi10g00900 | 1314 | PANTHER | BINDING PROTEIN, PUTATIVE-RELATED | 338 | 519 | - | - | |
Lsi10g00900 | 1314 | PANTHER | BINDING PROTEIN, PUTATIVE-RELATED | 69 | 338 | - | - | |
Lsi10g00900 | 1314 | PANTHER | CELL DIVISION PROTEIN KINASE | 720 | 1257 | - | - | |
Lsi10g00900 | 1314 | PANTHER | CELL DIVISION PROTEIN KINASE | 338 | 519 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi10g00900 | Lsi-Chr10:13344499 | Lsi11g00052 | Lsi-Chr11:603489 | 8.37E-15 | dispersed | |
Lsi10g00900 | Lsi-Chr10:13344499 | Lsi11g00478 | Lsi-Chr11:5048834 | 3.65E-12 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
83959 | PF00069 | Pkinase | 5.90E-67 | CL0016 | Lsi | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi10g00900 | - | - | cmo:103490535 | 1191.41 |