Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00900 ATGGGCTGCATCTGTTCTAAGGTTTTAGCTGATGAGTGTAGTGACAATGAACATGACATCTCCAAAAGAGTTCATTCCTCTATTAAACACCTCTCTGAATTAAAAACATCAAGATCTGGCTCTCAGATTTGGGAGAAAGATAGACTGAATTGTAGTGATGTTACGGTTATGTTGTTCGATACGACGGCGAACGGTTCTCTATGCGCACACGGCAAGCTTTCTAATGAGAGGAAGAAGACAGACATCCCTGATGTTGCCATTATCAACCATCCATTTATGGGAAAGATTCCGAAGACTACCGAGGCCGAGCAAGTCGCTGCCGGGTGGCCGAGTTGGCTGGCTGTGGTGGCTGGTGAAGCTATCAAAGGATGGTTGCCAAAACGTGCAAATAACTTCATCAAGTTAGAGAAAATTGGCCAAGGAACTTATAGCAGTGTATATAAAGCTCGTGATATCATTCAAGATAAAGTTGTGGCCTTGAAAAGGATCAGATTTGACAATCAAGATGCTGAGAGTATCAAGTTTATGGCAAGGGAAATCCTTGTTTTGAGAAGGCTTGATCATCCAAATATAATTAAGTTGGAAGGTTTGATCACATCACAAACATCATGTACCATGTACCTTGTTTTTGAATATATGGAACATGATCTTACCGGACTCGCATCACGGCCTGGTGCGTCGTTCACTGAACCACAGATGAAGTGTTACATGAAGCAACTTTTGAGTGGACTTGATCATTGTCACAGTAATGGGGTTCTACATAGAGACATAAAAGGCTCAAATCTTCTTATTGACAACAATGGCATTTTAAAGATAGCAGATTTTGGGTTGGCTGTTTTCTTTGATTCACATTCAACGGTTCAGATGACGAGCCGTGTAATAACTCTCTGGTATCGACCACCGGAACTTTTACTTGGAGCGTCTAAATATGGAGTTGAAGTTGATTTATGGAGTGCTGGTTGCATTCTAGGAGAATTATATACTGGCAAGCCTATCTTGCCAGGAAAAACAGAGTTCTTTACGACAAGGCCCTTTCCAAGCGATCCTTCAAATTTGCCAAAATACCCTCCAAGCAAAGAGATTGATTCAAAACTGCGTGAAGAGGAAGCAAGAAGGCAACAAGGAGTAGGTGGTGGGAGAAGCCAAGAAGCAAAAGGACTGAAGCAATCTAGAGTAGTACCTGCTGCAAGGGCTAATGCTGAGTTGGTTATTTCATTACTGAGAAAACAAAGTCGTTCGAGCGCAAAGTACCGGAATGAAACGTGTTCTTACGGTTTGGTGTCCAAAAGAACCTCAAATTCAGGACCTATAGCTCAGGGACCAAGATTTACAAACTCCAAAAAGGAAACAAAACATGTTTCTATGGTTTCTAGTGAATGTTTAATGTCATCTGGTCCTATTGAATTTGTTTCTTACAAATATGTCAGAGAAAGAAATGAAGTTTCAAAGCCAGAATCAATGAACCAAGACAGAAATCTTCCTCTTCTATCCAGTTCTTCTGCTGAAGAGTCATCCATCAAAAAGCTGAACAAAGACAAAGTTGATATGAAGAAAGTTACAAATTCTTATCTTCAGTCTGACGCTCTCCCAACTGAGCTATCCCCGCTTGATCATTCAAATGCAAACCAAATCCTTAACTCCTTTTATCTAATCAATTATGATTCTAGTCGTCGACATGGGTTGAAAGAGAAAGTGGGTATTTTTGACTCCTCAAACAGCCGGCACAGGCCGTCTGAATATCATAATCCTTTTAACTATGACGAAAATACATTGAAAGGGGATTCGAAAACTTTCTGGGTTTTTGGGGTTTTTTCAAATTCTGGAAGATTGGACTTTAGAAATTTGTTCCAGTGTTTTTTCTCAACTTCTGCGGTTTGGGGTTCAAAATCGCGTGTTTTGAAAGTCTTCTCTGAATTGGTTGGGTATATAGGAAGTTTCGTTATTAGATTAGCCACTGAGAAATTTCCTTCACGAAAGGCTTCACGAGATAATTTATTAAGAAAAGGAGAGGATATGCGATTGAATTCTGTGAAAAGAGACGAAGATGTTCGAATAAATTCTTCACAGAGAGCAGATAGTATTCGATCAAAGGTGAAAACAGATGGTGGTGACATGAAACTTGTTTATTTGGATAAGAGAGTCAACGGCTCTAACAGGGTACACGATGATCAAATTGAAAAAAAGAAGAGGGAGAGGTTGGAAGCTGCCATTTCTGCTAATTATCCTGGAAAAGGAAGCATTCCAAAAGCTATGGAGGCACAGCAAGTTGCAGCTGGTTGGCCAAGCTGGCTCTCCTCTGTGGCCGGTGAAGCGCTCGAAGGATGGCTGCCACGAAAAGCCGAAACTTTCGAGAAACTCGACAAGATAGGACAGGGTACATATAGTAGTGTTTACAAGGCTCGTGATATCATTCACAATAAACTAGTCGCTCTAAAACGAGTTCGATTCGATAATCTTGACGTGGAGAGTGTCAAGTTTATGGCCCGGGAAATCCTTATCCTGCGTAGGCTTGATCATCCAAATGTTATAAAGTTGGAAGGCTTGATTACATCACCGCGATCATGTAGCTTGTACCTCGTTTTTGAGTATATGGAACATGATCTTACAGGGCTCGCATCTCGGCCTGGCGTCAAGTTCAGCGAACCACAGGTTAAATGCTATATGCAACAACTTCTAAGGGGACTGGATTATTGCCACAGTCGTGGTGTCCTCCACCGTGATATAAAGGGTTCAAATCTCCTAATTGACGACAATGGTATCTTGAAGATTGCTGATTTTGGATTAGCAAGTCCTTTTGACCCCCATAATCAAGTTCCCTTAACAAGTCGTGTAGTGACTCTATGGTACCGACCGCCCGAACTTCTGCTTGGAGCTTCTCATTATGGGGTTGCAGTGGACCTATGGAGTACCGGTTGCATACTAGCTGAGCTATATGCTGGGAAGCCCATCTTACCTGGAAAAACTGAGGTAGAACATCCTTATATCTACTCTGCTGCAGCGGTCGAACAGTTGCATAAGATATTTAAACTTTGTGGGTCGCCGCCTGAGAATTATTGGAAGAAATTGCAGTTACCTCATTCAACTGGATTTAAGACGGCTCAGCCATACCGACGTTGTATCGGGGAAATGCTCAAGGATTTCCCTTCTTCTGCGGTGGCTCTTGTGGATAAGTTACTTTCCGTAGATCCCGCTCATCGGGGAACTGCAGCTGCTGCTTTAAAGAGCGAGTTTTTTACGACTAAACCACTTGCTTGTGAGCCTACGAGTTTGCCCAAATATCCTCCCAGCAAAGAGATCGATGCAAAATTCCCCGGCTGCAGAAGGGAAAAACAAGTATTTGGGGCTGAGAAGATGCAGTCAAGAGTTGAGGGGAAAGACCCTAAAGATTATGTGGAAGGGAGGCGACCTAAAGAAGCTCACCTTAATCTTTCTCTAAATGCTAAGGATGAAGTAAACATGTTAACGCAGAAAAGGCAAGGTCATGTAAGTTTTAAGGGCCGGAGCGGAGTGTTGAATCCGCATGGGGACGAAACAGTTTCTGGTTTTTTGATTCCTCCGCCGAAACAAAATCAATCTGTCACAGAAATTTGCTCAGATACAGGCCGGATTTCACATTCAGGACCGCTAATTAGCAAACCAGATTGGATGAAATCTAGAAAGCAACTCGATGACCATTCGATGGCGCTTGATGGATCCAATCTCTCAGTATTATCCCGTTTAGTAGCAACAAGGTCTAATATATCTGATCATCCCTATGATAGACCGGGTCCATCACGATCAGAAGTAGGCAGATTGCCTGACTTCGTTAGGGATTCAGAGTCAATGAGAAAGCAGGACCGAATATTTTATACACACCGAGTTGCAGATTCATATCGAATAGAGAACGAAAAAGTTAGTGCAAAAGAACAGTCCCTGGTTCGTTCCTTCTTTCCTCTAGCTTTGTAG 3945 42.28 MGCICSKVLADECSDNEHDISKRVHSSIKHLSELKTSRSGSQIWEKDRLNCSDVTVMLFDTTANGSLCAHGKLSNERKKTDIPDVAIINHPFMGKIPKTTEAEQVAAGWPSWLAVVAGEAIKGWLPKRANNFIKLEKIGQGTYSSVYKARDIIQDKVVALKRIRFDNQDAESIKFMAREILVLRRLDHPNIIKLEGLITSQTSCTMYLVFEYMEHDLTGLASRPGASFTEPQMKCYMKQLLSGLDHCHSNGVLHRDIKGSNLLIDNNGILKIADFGLAVFFDSHSTVQMTSRVITLWYRPPELLLGASKYGVEVDLWSAGCILGELYTGKPILPGKTEFFTTRPFPSDPSNLPKYPPSKEIDSKLREEEARRQQGVGGGRSQEAKGLKQSRVVPAARANAELVISLLRKQSRSSAKYRNETCSYGLVSKRTSNSGPIAQGPRFTNSKKETKHVSMVSSECLMSSGPIEFVSYKYVRERNEVSKPESMNQDRNLPLLSSSSAEESSIKKLNKDKVDMKKVTNSYLQSDALPTELSPLDHSNANQILNSFYLINYDSSRRHGLKEKVGIFDSSNSRHRPSEYHNPFNYDENTLKGDSKTFWVFGVFSNSGRLDFRNLFQCFFSTSAVWGSKSRVLKVFSELVGYIGSFVIRLATEKFPSRKASRDNLLRKGEDMRLNSVKRDEDVRINSSQRADSIRSKVKTDGGDMKLVYLDKRVNGSNRVHDDQIEKKKRERLEAAISANYPGKGSIPKAMEAQQVAAGWPSWLSSVAGEALEGWLPRKAETFEKLDKIGQGTYSSVYKARDIIHNKLVALKRVRFDNLDVESVKFMAREILILRRLDHPNVIKLEGLITSPRSCSLYLVFEYMEHDLTGLASRPGVKFSEPQVKCYMQQLLRGLDYCHSRGVLHRDIKGSNLLIDDNGILKIADFGLASPFDPHNQVPLTSRVVTLWYRPPELLLGASHYGVAVDLWSTGCILAELYAGKPILPGKTEVEHPYIYSAAAVEQLHKIFKLCGSPPENYWKKLQLPHSTGFKTAQPYRRCIGEMLKDFPSSAVALVDKLLSVDPAHRGTAAAALKSEFFTTKPLACEPTSLPKYPPSKEIDAKFPGCRREKQVFGAEKMQSRVEGKDPKDYVEGRRPKEAHLNLSLNAKDEVNMLTQKRQGHVSFKGRSGVLNPHGDETVSGFLIPPPKQNQSVTEICSDTGRISHSGPLISKPDWMKSRKQLDDHSMALDGSNLSVLSRLVATRSNISDHPYDRPGPSRSEVGRLPDFVRDSESMRKQDRIFYTHRVADSYRIENEKVSAKEQSLVRSFFPLAL 1314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 13344499 13357503 + Lsi10G009000.1 Lsi10g00900 672457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00900 1314 ProSitePatterns Protein kinases ATP-binding region signature. 789 812 IPR017441 GO:0005524
Lsi10g00900 1314 ProSitePatterns Serine/Threonine protein kinases active-site signature. 903 915 IPR008271 GO:0004672|GO:0006468
Lsi10g00900 1314 PANTHER CELL DIVISION PROTEIN KINASE 69 338 - -
Lsi10g00900 1314 MobiDBLite consensus disorder prediction 480 504 - -
Lsi10g00900 1314 Gene3D Phosphorylase Kinase; domain 1 119 214 - -
Lsi10g00900 1314 Gene3D Phosphorylase Kinase; domain 1 770 865 - -
Lsi10g00900 1314 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 720 1257 - -
Lsi10g00900 1314 SMART serkin_6 783 1078 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi10g00900 1314 SMART serkin_6 132 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi10g00900 1314 ProSiteProfiles Protein kinase domain profile. 132 427 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi10g00900 1314 Pfam Protein kinase domain 133 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi10g00900 1314 Pfam Protein kinase domain 783 1078 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi10g00900 1314 MobiDBLite consensus disorder prediction 359 374 - -
Lsi10g00900 1314 ProSitePatterns Serine/Threonine protein kinases active-site signature. 252 264 IPR008271 GO:0004672|GO:0006468
Lsi10g00900 1314 SUPERFAMILY Protein kinase-like (PK-like) 127 339 IPR011009 -
Lsi10g00900 1314 MobiDBLite consensus disorder prediction 486 504 - -
Lsi10g00900 1314 ProSitePatterns Protein kinases ATP-binding region signature. 138 161 IPR017441 GO:0005524
Lsi10g00900 1314 ProSiteProfiles Protein kinase domain profile. 783 1078 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi10g00900 1314 SUPERFAMILY Protein kinase-like (PK-like) 778 1083 IPR011009 -
Lsi10g00900 1314 Gene3D Transferase(Phosphotransferase) domain 1 866 1115 - -
Lsi10g00900 1314 Gene3D Transferase(Phosphotransferase) domain 1 215 414 - -
Lsi10g00900 1314 CDD STKc_CDK9_like 783 1078 - -
Lsi10g00900 1314 MobiDBLite consensus disorder prediction 343 391 - -
Lsi10g00900 1314 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 338 519 - -
Lsi10g00900 1314 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 69 338 - -
Lsi10g00900 1314 PANTHER CELL DIVISION PROTEIN KINASE 720 1257 - -
Lsi10g00900 1314 PANTHER CELL DIVISION PROTEIN KINASE 338 519 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi10g00900 Lsi-Chr10:13344499 Lsi11g00052 Lsi-Chr11:603489 8.37E-15 dispersed
Lsi10g00900 Lsi-Chr10:13344499 Lsi11g00478 Lsi-Chr11:5048834 3.65E-12 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83959 PF00069 Pkinase 5.90E-67 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00900 - - cmo:103490535 1191.41