Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00932 ATGCCGACCAGTTTGGTCTCTTCTCACAGACCGGAGCTTCTCACCGTCGCCGTCGCTGTGGTTGCTGTCGGCGTTGCCACTGCCTACTATTTCTACATCACCAAGAAATCCAAACCCAAAGGTTGCTTGGACCCTAATAACTTCAAGGAATTTAAACTAGTTAAACGCACAAAGCTTAGCCATAATGTAGCAAAGTTCAGATTCTCTCTTCCGACGCCAACCTCAATCTTGGGGCTGCCGATTGGGCAGCATGTCAGTTGCAGAGGAAAAGATAGTGAAGGTGAAGATGTTGTGAAACCTTACACTCCAACCACTTTGGACACAGATGTTGGATACTTTGATTTGGTCATAAAGATGTATCCACAAGGAAGGATGTCCCACCACTTTCGTGAGATGCGTGAAGGTGATTACTTGGCTGTGAAAGGTCCAAAGGGACGATTCAAGTATGAACCTAATGAAGTTGAGGCCTTTGGAATGCTTGCTGGAGGCACAGGCATAACTCCTATGTTCCAGGTTGCAAGAGCAATACTGGAAAACCCAGTGGATCGCACCAATTTGCATCTTATATATGCTAATATAACTTATGAAGACATCCTTCTAAAGGAAGAATTGGATAGTCTTGCCGCTAGGTTTCCCACCCGCTTTACCATCTACTATGTGCTCAATCAGCCTCCTGAAGGATGGGATGGTGGCATTGGCTTTGTAACTGAGGAAATGATACGACTACACTGTCCTGCGCCATCCCCTAATGTTCGGATTTTGAGGTGCGGACCACCCCCCATGAACAAAGCTATGGCTGCTTACCTCAACACTATTGGCTATCCTTCCCAAACGCAGTTGATGTTCTAA 849 46.17 MPTSLVSSHRPELLTVAVAVVAVGVATAYYFYITKKSKPKGCLDPNNFKEFKLVKRTKLSHNVAKFRFSLPTPTSILGLPIGQHVSCRGKDSEGEDVVKPYTPTTLDTDVGYFDLVIKMYPQGRMSHHFREMREGDYLAVKGPKGRFKYEPNEVEAFGMLAGGTGITPMFQVARAILENPVDRTNLHLIYANITYEDILLKEELDSLAARFPTRFTIYYVLNQPPEGWDGGIGFVTEEMIRLHCPAPSPNVRILRCGPPPMNKAMAAYLNTIGYPSQTQLMF 282
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 13772015 13777908 + Lsi10G009320.1 Lsi10g00932 672489

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00932 282 CDD cyt_b5_reduct_like 51 282 - -
Lsi10g00932 282 PANTHER NADH-CYTOCHROME B5 REDUCTASE 6 282 IPR001834 GO:0016491
Lsi10g00932 282 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 138 276 IPR039261 -
Lsi10g00932 282 Gene3D Translation factors 38 139 - -
Lsi10g00932 282 PANTHER NADH-CYTOCHROME B5 REDUCTASE 6 282 - -
Lsi10g00932 282 Gene3D - 140 282 IPR039261 -
Lsi10g00932 282 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 46 150 IPR017927 GO:0016491
Lsi10g00932 282 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 196 207 IPR001709 GO:0016491
Lsi10g00932 282 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 252 260 IPR001709 GO:0016491
Lsi10g00932 282 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 158 177 IPR001709 GO:0016491
Lsi10g00932 282 SUPERFAMILY Riboflavin synthase domain-like 42 152 IPR017938 -
Lsi10g00932 282 Pfam Oxidoreductase FAD-binding domain 51 149 IPR008333 -
Lsi10g00932 282 PRINTS Cytochrome B5 reductase signature 196 207 - -
Lsi10g00932 282 PRINTS Cytochrome B5 reductase signature 77 88 - -
Lsi10g00932 282 PRINTS Cytochrome B5 reductase signature 135 149 - -
Lsi10g00932 282 PRINTS Cytochrome B5 reductase signature 99 106 - -
Lsi10g00932 282 PRINTS Cytochrome B5 reductase signature 158 177 - -
Lsi10g00932 282 PRINTS Cytochrome B5 reductase signature 252 260 - -
Lsi10g00932 282 Pfam Oxidoreductase NAD-binding domain 159 265 IPR001433 GO:0016491
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00932 K00326 CYB5R; cytochrome-b5 reductase [EC:1.6.2.2] - csv:101219272 512.301
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g00984 Lsi-Chr9:13189372 Lsi10g00932 Lsi-Chr10:13772015 5.38E-45 dispersed
Lsi09g00987 Lsi-Chr9:13311405 Lsi10g00932 Lsi-Chr10:13772015 1.24E-48 dispersed
Lsi10g00932 Lsi-Chr10:13772015 Lsi11g00303 Lsi-Chr11:3147415 4.76E-60 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi09g00003 . 1 134 NADPH P450 reductases AT5G53560 78.4 7.0e-59 223.4
Lsi05g01833 . 1 133 NADPH P450 reductases AT5G53560 67.7 4.1e-51 197.6
Lsi05g01118 . 4 131 NADPH P450 reductases AT5G53560 63.3 4.4e-45 177.6
Lsi09g01152 . 36 139 NADPH P450 reductases AT5G53560 70.2 4.7e-39 157.5
Lsi05g01833 . 1 132 NADPH P450 reductases AT5G48810 65.7 2.6e-48 188.3
Lsi05g01118 . 2 132 NADPH P450 reductases AT5G48810 61.7 4.6e-45 177.6
Lsi09g00003 . 1 134 NADPH P450 reductases AT5G48810 59.6 7.9e-45 176.8
Lsi05g01833 . 22 133 NADPH P450 reductases AT2G32720 84.8 7.0e-51 196.8
Lsi09g01152 . 31 139 NADPH P450 reductases AT2G32720 83.5 1.2e-47 186.0
Lsi05g01118 . 21 132 NADPH P450 reductases AT2G32720 72.3 2.7e-42 168.3
Lsi09g00003 . 22 133 NADPH P450 reductases AT2G32720 66.1 4.3e-40 161.0
Lsi01g01736 CCT 3 257 NADPH P450 reductases AT5G17770 79.6 1.2e-116 416.4
Lsi10g00932 . 10 282 NADPH P450 reductases AT5G17770 71.8 4.5e-116 414.5
Lsi03g01657 CCT 2 110 NADPH P450 reductases AT5G17770 81.7 1.8e-48 189.9
Lsi09g00003 . 1 134 NADPH P450 reductases AT5G53560 78.4 7.0e-59 223.4
Lsi05g01833 . 1 133 NADPH P450 reductases AT5G53560 67.7 4.1e-51 197.6
Lsi05g01118 . 4 131 NADPH P450 reductases AT5G53560 63.3 4.4e-45 177.6
Lsi09g01152 . 36 139 NADPH P450 reductases AT5G53560 70.2 4.7e-39 157.5
Lsi05g01833 . 1 132 NADPH P450 reductases AT5G48810 65.7 2.6e-48 188.3
Lsi05g01118 . 2 132 NADPH P450 reductases AT5G48810 61.7 4.6e-45 177.6
Lsi09g00003 . 1 134 NADPH P450 reductases AT5G48810 59.6 7.9e-45 176.8
Lsi05g01833 . 22 133 NADPH P450 reductases AT2G32720 84.8 7.0e-51 196.8
Lsi09g01152 . 31 139 NADPH P450 reductases AT2G32720 83.5 1.2e-47 186.0
Lsi05g01118 . 21 132 NADPH P450 reductases AT2G32720 72.3 2.7e-42 168.3
Lsi09g00003 . 22 133 NADPH P450 reductases AT2G32720 66.1 4.3e-40 161.0
Lsi01g01736 CCT 3 257 NADPH P450 reductases AT5G17770 79.6 1.2e-116 416.4
Lsi10g00932 . 10 282 NADPH P450 reductases AT5G17770 71.8 4.5e-116 414.5
Lsi03g01657 CCT 2 110 NADPH P450 reductases AT5G17770 81.7 1.8e-48 189.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000880 3 3 2 3 3 2 4 3 2 3 3 3 4 3 3 4 3 4 4 2 3 2 2 3 2 1 1 3 5 3 86
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi10g00932 Lsi_Chr10 FPKM 2.961058 2.775251 6.678219 4.742908 4.619646 5.925752 5.103373 4.34605 4.484945 4.440457