Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00932 ATGCCGACCAGTTTGGTCTCTTCTCACAGACCGGAGCTTCTCACCGTCGCCGTCGCTGTGGTTGCTGTCGGCGTTGCCACTGCCTACTATTTCTACATCACCAAGAAATCCAAACCCAAAGGTTGCTTGGACCCTAATAACTTCAAGGAATTTAAACTAGTTAAACGCACAAAGCTTAGCCATAATGTAGCAAAGTTCAGATTCTCTCTTCCGACGCCAACCTCAATCTTGGGGCTGCCGATTGGGCAGCATGTCAGTTGCAGAGGAAAAGATAGTGAAGGTGAAGATGTTGTGAAACCTTACACTCCAACCACTTTGGACACAGATGTTGGATACTTTGATTTGGTCATAAAGATGTATCCACAAGGAAGGATGTCCCACCACTTTCGTGAGATGCGTGAAGGTGATTACTTGGCTGTGAAAGGTCCAAAGGGACGATTCAAGTATGAACCTAATGAAGTTGAGGCCTTTGGAATGCTTGCTGGAGGCACAGGCATAACTCCTATGTTCCAGGTTGCAAGAGCAATACTGGAAAACCCAGTGGATCGCACCAATTTGCATCTTATATATGCTAATATAACTTATGAAGACATCCTTCTAAAGGAAGAATTGGATAGTCTTGCCGCTAGGTTTCCCACCCGCTTTACCATCTACTATGTGCTCAATCAGCCTCCTGAAGGATGGGATGGTGGCATTGGCTTTGTAACTGAGGAAATGATACGACTACACTGTCCTGCGCCATCCCCTAATGTTCGGATTTTGAGGTGCGGACCACCCCCCATGAACAAAGCTATGGCTGCTTACCTCAACACTATTGGCTATCCTTCCCAAACGCAGTTGATGTTCTAA 849 46.17 MPTSLVSSHRPELLTVAVAVVAVGVATAYYFYITKKSKPKGCLDPNNFKEFKLVKRTKLSHNVAKFRFSLPTPTSILGLPIGQHVSCRGKDSEGEDVVKPYTPTTLDTDVGYFDLVIKMYPQGRMSHHFREMREGDYLAVKGPKGRFKYEPNEVEAFGMLAGGTGITPMFQVARAILENPVDRTNLHLIYANITYEDILLKEELDSLAARFPTRFTIYYVLNQPPEGWDGGIGFVTEEMIRLHCPAPSPNVRILRCGPPPMNKAMAAYLNTIGYPSQTQLMF 282
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 13772015 13777908 + Lsi10G009320.1 Lsi10g00932 672489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00932 282 CDD cyt_b5_reduct_like 51 282 - -
Lsi10g00932 282 PANTHER NADH-CYTOCHROME B5 REDUCTASE 6 282 IPR001834 GO:0016491
Lsi10g00932 282 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 138 276 IPR039261 -
Lsi10g00932 282 Gene3D Translation factors 38 139 - -
Lsi10g00932 282 PANTHER NADH-CYTOCHROME B5 REDUCTASE 6 282 - -
Lsi10g00932 282 Gene3D - 140 282 IPR039261 -
Lsi10g00932 282 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 46 150 IPR017927 GO:0016491
Lsi10g00932 282 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 196 207 IPR001709 GO:0016491
Lsi10g00932 282 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 252 260 IPR001709 GO:0016491
Lsi10g00932 282 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 158 177 IPR001709 GO:0016491
Lsi10g00932 282 SUPERFAMILY Riboflavin synthase domain-like 42 152 IPR017938 -
Lsi10g00932 282 Pfam Oxidoreductase FAD-binding domain 51 149 IPR008333 -
Lsi10g00932 282 PRINTS Cytochrome B5 reductase signature 196 207 - -
Lsi10g00932 282 PRINTS Cytochrome B5 reductase signature 77 88 - -
Lsi10g00932 282 PRINTS Cytochrome B5 reductase signature 135 149 - -
Lsi10g00932 282 PRINTS Cytochrome B5 reductase signature 99 106 - -
Lsi10g00932 282 PRINTS Cytochrome B5 reductase signature 158 177 - -
Lsi10g00932 282 PRINTS Cytochrome B5 reductase signature 252 260 - -
Lsi10g00932 282 Pfam Oxidoreductase NAD-binding domain 159 265 IPR001433 GO:0016491
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g00984 Lsi-Chr9:13189372 Lsi10g00932 Lsi-Chr10:13772015 5.38E-45 dispersed
Lsi09g00987 Lsi-Chr9:13311405 Lsi10g00932 Lsi-Chr10:13772015 1.24E-48 dispersed
Lsi10g00932 Lsi-Chr10:13772015 Lsi11g00303 Lsi-Chr11:3147415 4.76E-60 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00932 K00326 - csv:101219272 512.301