Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00941 ATGGCTGTAACAGCCCCAGGGCAGCTAAACGTTAACGAGTCTCCTTCGTGGGGATCTAGAAGTGTCGACTGCTTCGAAAAACTGGAGCAGATTGGTGAAGGCACTTATGGTCAAGTTTACATGGCCAGAGAATTAAAAACAGGTGAAATTGTTGCACTGAAGAAAATACGAATGGACAATGAGAGGGAGGGGTTCCCTATTACTGCCATACGAGAAATCAAAATTTTAAAGAAGCTTCATCATGAAAATGTAATCAAGTTGAAAGAGATCGTGACATCTCCAGATGGTAACAAGTACAAAGGTGGAATCTACATGGTTTTTGAGTACATGGACCATGATTTGACTGGTCTTGCTGATCGTCCAGGGATGAGATTTTCAGTTCCTCAAATCAAGTGTTACATGAGGCAGCTTCTCACAGGGCTTCACTATTGTCATGTAAATCAAGTACTCCATAGAGATATCAAAGGCTCAAATCTGCTTATTGACAATGAAGGAAACCTGAAGCTTGCAGATTTTGGGCTTGCCCGATCATTTTCTAATGATCACAATGCAAATCTGACAAATCGTGTCATTACCTTATGGTACAGACCTCCTGAATTGCTGCTTGGGTCGACCAAATATGGTCCAGCTGTAGATATGTGGTCTGTTGGTTGTATCTTTGCAGAACTTCTACATGGGAAGCCAATATTCCCCGGGAAGGATGAGCCGGAGCAATTAAATAAGATCTTTGAGCTGTGTGGTGCTCCGGATGAAGTCAATTGGCCTGGGGTTTCTAAAATCCCTTGGTACAATAATTTCAAGCCCACAAGGCCGATGAAGAGACGTATTAGAGAAGTTTTCCGGCATTTTGATCGTCATGCTTTAGAACTGTTGGAGAAGATGCTTATGCTCGATCCTTCTCAGAGGATATCTGCCAAGGATGCGCTAGATGCGGAGTATTTTTGGACAGATCCATTACCTTGTGATCCTAAAAGTTTGCCTAAGTATGAATCATCACACGAGTTCCAGACAAAGAAGAAGCGTCAACAGCAACGACAACATGAAGAAACTACAAAGCGACAAAAATTGCAACACGCACAGCATGCACGCCTTCCACCTATTCAGCAGTCGGGGCAAGCACACACACAGATGCGACCAGTACCTAACCAGCCAATTCATGGGTCTCAACAACCAGTCGCTGCAGGGCCTAGCCATCATTTTGGAAAGCCTCGTGGACCCCCAGGTCCTGGTAGGTATCCCGGTGGAAATCCCCCTTCTGGATACAACCACTCAAGTCGTGGTGGTCAAGGTGGTTATGGTAACACACAATATGCACAAGGACGAGGTGCTGCACCTTATGGTTCTGGTAACATGTCTGGTGCTGGTCCTCGAGGTGGAGCCGGAGGTGGTGGAGGTTATGGCGTGGGAGCTCCAAATTATCCACAGAATGGTCCATATCCTGGTAGTTCTGGTGCTGGCCGTGGCTCCAATGTGATGGGCGGAAACCGCAACCAACAATATGGGTGGCAACAACAATGA 1518 45.92 MAVTAPGQLNVNESPSWGSRSVDCFEKLEQIGEGTYGQVYMARELKTGEIVALKKIRMDNEREGFPITAIREIKILKKLHHENVIKLKEIVTSPDGNKYKGGIYMVFEYMDHDLTGLADRPGMRFSVPQIKCYMRQLLTGLHYCHVNQVLHRDIKGSNLLIDNEGNLKLADFGLARSFSNDHNANLTNRVITLWYRPPELLLGSTKYGPAVDMWSVGCIFAELLHGKPIFPGKDEPEQLNKIFELCGAPDEVNWPGVSKIPWYNNFKPTRPMKRRIREVFRHFDRHALELLEKMLMLDPSQRISAKDALDAEYFWTDPLPCDPKSLPKYESSHEFQTKKKRQQQRQHEETTKRQKLQHAQHARLPPIQQSGQAHTQMRPVPNQPIHGSQQPVAAGPSHHFGKPRGPPGPGRYPGGNPPSGYNHSSRGGQGGYGNTQYAQGRGAAPYGSGNMSGAGPRGGAGGGGGYGVGAPNYPQNGPYPGSSGAGRGSNVMGGNRNQQYGWQQQ 505
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 13838210 13845234 + Lsi10G009410.1 Lsi10g00941 672498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00941 505 Pfam Protein kinase domain 25 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi10g00941 505 MobiDBLite consensus disorder prediction 327 356 - -
Lsi10g00941 505 ProSitePatterns Serine/Threonine protein kinases active-site signature. 149 161 IPR008271 GO:0004672|GO:0006468
Lsi10g00941 505 Gene3D Phosphorylase Kinase; domain 1 12 111 - -
Lsi10g00941 505 Gene3D Transferase(Phosphotransferase) domain 1 112 354 - -
Lsi10g00941 505 CDD STKc_CDK9_like 25 314 - -
Lsi10g00941 505 MobiDBLite consensus disorder prediction 418 436 - -
Lsi10g00941 505 MobiDBLite consensus disorder prediction 363 390 - -
Lsi10g00941 505 MobiDBLite consensus disorder prediction 325 505 - -
Lsi10g00941 505 ProSiteProfiles Protein kinase domain profile. 25 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi10g00941 505 ProSitePatterns Protein kinases ATP-binding region signature. 31 54 IPR017441 GO:0005524
Lsi10g00941 505 SMART serkin_6 25 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi10g00941 505 PANTHER CELL DIVISION PROTEIN KINASE 5 440 - -
Lsi10g00941 505 SUPERFAMILY Protein kinase-like (PK-like) 19 322 IPR011009 -
Lsi10g00941 505 PANTHER CYCLIN-DEPENDENT KINASE C-2 5 440 - -
Lsi10g00941 505 MobiDBLite consensus disorder prediction 476 505 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01376 Lsi-Chr3:24706718 Lsi10g00941 Lsi-Chr10:13838210 0 dispersed
Lsi04g00660 Lsi-Chr4:6021885 Lsi10g00941 Lsi-Chr10:13838210 1.43E-75 dispersed
Lsi06g01303 Lsi-Chr6:23571443 Lsi10g00941 Lsi-Chr10:13838210 2.65E-76 dispersed
Lsi08g01606 Lsi-Chr8:24018415 Lsi10g00941 Lsi-Chr10:13838210 1.02E-90 dispersed
Lsi10g00941 Lsi-Chr10:13838210 Lsi05g00144 Lsi-Chr5:2112119 8.23E-122 dispersed
Lsi10g00941 Lsi-Chr10:13838210 Lsi11g00478 Lsi-Chr11:5048834 1.17E-112 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83961 PF00069 Pkinase 1.40E-75 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00941 K08819 - csv:101220936 939.873