Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi10g00941 | ATGGCTGTAACAGCCCCAGGGCAGCTAAACGTTAACGAGTCTCCTTCGTGGGGATCTAGAAGTGTCGACTGCTTCGAAAAACTGGAGCAGATTGGTGAAGGCACTTATGGTCAAGTTTACATGGCCAGAGAATTAAAAACAGGTGAAATTGTTGCACTGAAGAAAATACGAATGGACAATGAGAGGGAGGGGTTCCCTATTACTGCCATACGAGAAATCAAAATTTTAAAGAAGCTTCATCATGAAAATGTAATCAAGTTGAAAGAGATCGTGACATCTCCAGATGGTAACAAGTACAAAGGTGGAATCTACATGGTTTTTGAGTACATGGACCATGATTTGACTGGTCTTGCTGATCGTCCAGGGATGAGATTTTCAGTTCCTCAAATCAAGTGTTACATGAGGCAGCTTCTCACAGGGCTTCACTATTGTCATGTAAATCAAGTACTCCATAGAGATATCAAAGGCTCAAATCTGCTTATTGACAATGAAGGAAACCTGAAGCTTGCAGATTTTGGGCTTGCCCGATCATTTTCTAATGATCACAATGCAAATCTGACAAATCGTGTCATTACCTTATGGTACAGACCTCCTGAATTGCTGCTTGGGTCGACCAAATATGGTCCAGCTGTAGATATGTGGTCTGTTGGTTGTATCTTTGCAGAACTTCTACATGGGAAGCCAATATTCCCCGGGAAGGATGAGCCGGAGCAATTAAATAAGATCTTTGAGCTGTGTGGTGCTCCGGATGAAGTCAATTGGCCTGGGGTTTCTAAAATCCCTTGGTACAATAATTTCAAGCCCACAAGGCCGATGAAGAGACGTATTAGAGAAGTTTTCCGGCATTTTGATCGTCATGCTTTAGAACTGTTGGAGAAGATGCTTATGCTCGATCCTTCTCAGAGGATATCTGCCAAGGATGCGCTAGATGCGGAGTATTTTTGGACAGATCCATTACCTTGTGATCCTAAAAGTTTGCCTAAGTATGAATCATCACACGAGTTCCAGACAAAGAAGAAGCGTCAACAGCAACGACAACATGAAGAAACTACAAAGCGACAAAAATTGCAACACGCACAGCATGCACGCCTTCCACCTATTCAGCAGTCGGGGCAAGCACACACACAGATGCGACCAGTACCTAACCAGCCAATTCATGGGTCTCAACAACCAGTCGCTGCAGGGCCTAGCCATCATTTTGGAAAGCCTCGTGGACCCCCAGGTCCTGGTAGGTATCCCGGTGGAAATCCCCCTTCTGGATACAACCACTCAAGTCGTGGTGGTCAAGGTGGTTATGGTAACACACAATATGCACAAGGACGAGGTGCTGCACCTTATGGTTCTGGTAACATGTCTGGTGCTGGTCCTCGAGGTGGAGCCGGAGGTGGTGGAGGTTATGGCGTGGGAGCTCCAAATTATCCACAGAATGGTCCATATCCTGGTAGTTCTGGTGCTGGCCGTGGCTCCAATGTGATGGGCGGAAACCGCAACCAACAATATGGGTGGCAACAACAATGA | 1518 | 45.92 | MAVTAPGQLNVNESPSWGSRSVDCFEKLEQIGEGTYGQVYMARELKTGEIVALKKIRMDNEREGFPITAIREIKILKKLHHENVIKLKEIVTSPDGNKYKGGIYMVFEYMDHDLTGLADRPGMRFSVPQIKCYMRQLLTGLHYCHVNQVLHRDIKGSNLLIDNEGNLKLADFGLARSFSNDHNANLTNRVITLWYRPPELLLGSTKYGPAVDMWSVGCIFAELLHGKPIFPGKDEPEQLNKIFELCGAPDEVNWPGVSKIPWYNNFKPTRPMKRRIREVFRHFDRHALELLEKMLMLDPSQRISAKDALDAEYFWTDPLPCDPKSLPKYESSHEFQTKKKRQQQRQHEETTKRQKLQHAQHARLPPIQQSGQAHTQMRPVPNQPIHGSQQPVAAGPSHHFGKPRGPPGPGRYPGGNPPSGYNHSSRGGQGGYGNTQYAQGRGAAPYGSGNMSGAGPRGGAGGGGGYGVGAPNYPQNGPYPGSSGAGRGSNVMGGNRNQQYGWQQQ | 505 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 13838210 | 13845234 | + | Lsi10G009410.1 | Lsi10g00941 | 672498 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi10g00941 | 505 | Pfam | Protein kinase domain | 25 | 314 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi10g00941 | 505 | MobiDBLite | consensus disorder prediction | 327 | 356 | - | - | |
Lsi10g00941 | 505 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 149 | 161 | IPR008271 | GO:0004672|GO:0006468 | |
Lsi10g00941 | 505 | Gene3D | Phosphorylase Kinase; domain 1 | 12 | 111 | - | - | |
Lsi10g00941 | 505 | Gene3D | Transferase(Phosphotransferase) domain 1 | 112 | 354 | - | - | |
Lsi10g00941 | 505 | CDD | STKc_CDK9_like | 25 | 314 | - | - | |
Lsi10g00941 | 505 | MobiDBLite | consensus disorder prediction | 418 | 436 | - | - | |
Lsi10g00941 | 505 | MobiDBLite | consensus disorder prediction | 363 | 390 | - | - | |
Lsi10g00941 | 505 | MobiDBLite | consensus disorder prediction | 325 | 505 | - | - | |
Lsi10g00941 | 505 | ProSiteProfiles | Protein kinase domain profile. | 25 | 314 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi10g00941 | 505 | ProSitePatterns | Protein kinases ATP-binding region signature. | 31 | 54 | IPR017441 | GO:0005524 | |
Lsi10g00941 | 505 | SMART | serkin_6 | 25 | 314 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi10g00941 | 505 | PANTHER | CELL DIVISION PROTEIN KINASE | 5 | 440 | - | - | |
Lsi10g00941 | 505 | SUPERFAMILY | Protein kinase-like (PK-like) | 19 | 322 | IPR011009 | - | |
Lsi10g00941 | 505 | PANTHER | CYCLIN-DEPENDENT KINASE C-2 | 5 | 440 | - | - | |
Lsi10g00941 | 505 | MobiDBLite | consensus disorder prediction | 476 | 505 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi03g01376 | Lsi-Chr3:24706718 | Lsi10g00941 | Lsi-Chr10:13838210 | 0 | dispersed | |
Lsi04g00660 | Lsi-Chr4:6021885 | Lsi10g00941 | Lsi-Chr10:13838210 | 1.43E-75 | dispersed | |
Lsi06g01303 | Lsi-Chr6:23571443 | Lsi10g00941 | Lsi-Chr10:13838210 | 2.65E-76 | dispersed | |
Lsi08g01606 | Lsi-Chr8:24018415 | Lsi10g00941 | Lsi-Chr10:13838210 | 1.02E-90 | dispersed | |
Lsi10g00941 | Lsi-Chr10:13838210 | Lsi05g00144 | Lsi-Chr5:2112119 | 8.23E-122 | dispersed | |
Lsi10g00941 | Lsi-Chr10:13838210 | Lsi11g00478 | Lsi-Chr11:5048834 | 1.17E-112 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
83961 | PF00069 | Pkinase | 1.40E-75 | CL0016 | Lsi | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi10g00941 | K08819 | - | csv:101220936 | 939.873 |