Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00943 ATGAGAAGATCAGGTGTTAACCAACCAAAAGTCAAGCGTCTTGTTGGAAAATATGAAATTGGTCGAACAATCGGCGAGGGTACATTTGCGAAAGTGAAAATTGCCAAAAATTCGGAGACTGGGGATCATGTAGCAATAAAGATTCTTGACAAAGAGAAAGTTCTGAAGCACAAGATGGCTGAACAGATCAAGCGGGAAATTGCCACAATGAAACTAATAAAGCATCCACATGTCGTCCAATTGTTTGAGGTGATGGGGAGCAAAACCAAGATATTTATTGTTTTGGAATTTGTTACTGGAGGAGAACTTTTTGATAAAATTGTGAACCCTAATTCACCATTCTTTGGACCTTGGTACTCTTTTGACTTTTATTTAGATTCAATATTGAACCTTCTGCGTTATTCTTGGAGGGGTGTTTACCACAGGGATCTGAAGCCAGAAAATCTATTGTTAGATGCCTACGGGAATCTTAAAGTGTCTGATTTTGGATTGAGTGCACTGTCACAACAAGTTAAGGATGATGGCCTGCTTCACACTACCTGCGGAACTCCAAACTATGTTGCTCCCGAGGTCCTTAAGGATAGAGGCTACGATGGTGCAACTGCAGACTTATGGTCTTGTGGAGTTATACTCTTTGTACTGCTTGCAGATGCCATGAAATTGATAGCTCGAATTTTGGATCCCAACCCAATGACTCGCATCACTGTACCTGAAATTTTGGAAGATGAATGGTTTAAGAAAGATTATAAGCCCCCTGTTTTTGAGGAGCCTAAGATTGCAAACTTGGATGATGTAGAAGCTGTCTTCAAAGATTCAGAAGAGCACCATGTGACAGAGAAGAAGGAAGAACACCCAGCAGCTATGAATGCCTTTGAGTTAATTTCAATGTCGAAAGGGCTCAACCTGGCAAATTTGTTTGGTACAGAACAGGAATTCAAGAGAGAAACAAGGTTCACCTCTAAATGCTCAGCTAATGAAATTGTAAATAAGATTGAAGAAGCTGCCAAACCTCTTGGGTTTGATGTACAAAAGAAAAATTACAAGATGAGGCTTGAAAATGTGAAAGCCGGCCGGAAGGGAAACCTTAATGTTGCCACAGAGATTTTGCAAGTTGCACCTTCTGTCCATGTGGTTGAGATGCGAAAAGCAAAGGGAGACACTTTAGAGTTTCACAAGTTCTACAAAAACCTCTCCACCTCTCTGGAAGATGTTGTTTGGAAGACGGAGGAAGACATGCAAGAAACAAAGTGA 1251 40.77 MRRSGVNQPKVKRLVGKYEIGRTIGEGTFAKVKIAKNSETGDHVAIKILDKEKVLKHKMAEQIKREIATMKLIKHPHVVQLFEVMGSKTKIFIVLEFVTGGELFDKIVNPNSPFFGPWYSFDFYLDSILNLLRYSWRGVYHRDLKPENLLLDAYGNLKVSDFGLSALSQQVKDDGLLHTTCGTPNYVAPEVLKDRGYDGATADLWSCGVILFVLLADAMKLIARILDPNPMTRITVPEILEDEWFKKDYKPPVFEEPKIANLDDVEAVFKDSEEHHVTEKKEEHPAAMNAFELISMSKGLNLANLFGTEQEFKRETRFTSKCSANEIVNKIEEAAKPLGFDVQKKNYKMRLENVKAGRKGNLNVATEILQVAPSVHVVEMRKAKGDTLEFHKFYKNLSTSLEDVVWKTEEDMQETK 416
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 13851414 13861696 - Lsi10G009430.1 Lsi10g00943 672500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00943 416 SUPERFAMILY Protein kinase-like (PK-like) 14 273 IPR011009 -
Lsi10g00943 416 ProSiteProfiles Protein kinase domain profile. 18 245 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi10g00943 416 ProSitePatterns Protein kinases ATP-binding region signature. 24 47 IPR017441 GO:0005524
Lsi10g00943 416 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 3 217 409 - -
Lsi10g00943 416 Gene3D Kinase associated domain 1, KA1 282 407 - -
Lsi10g00943 416 PANTHER - 7 216 - -
Lsi10g00943 416 ProSitePatterns Serine/Threonine protein kinases active-site signature. 139 151 IPR008271 GO:0004672|GO:0006468
Lsi10g00943 416 PANTHER - 217 409 - -
Lsi10g00943 416 Pfam Protein kinase domain 18 217 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi10g00943 416 Gene3D Transferase(Phosphotransferase) domain 1 98 271 - -
Lsi10g00943 416 CDD CIPK_C 289 403 - -
Lsi10g00943 416 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 3 7 216 - -
Lsi10g00943 416 SMART serkin_6 18 245 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi10g00943 416 Gene3D Phosphorylase Kinase; domain 1 7 97 - -
Lsi10g00943 416 Pfam NAF domain 285 344 IPR004041 GO:0007165
Lsi10g00943 416 ProSiteProfiles NAF domain profile. 283 307 IPR018451 GO:0007165
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g00977 Lsi-Chr6:19746830 Lsi10g00943 Lsi-Chr10:13851414 5.75E-144 dispersed
Lsi10g00943 Lsi-Chr10:13851414 Lsi01g01604 Lsi-Chr1:14328759 8.78E-122 dispersed
Lsi10g00943 Lsi-Chr10:13851414 Lsi02g00916 Lsi-Chr2:8801729 4.05E-180 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83963 PF00069 Pkinase 1.90E-51 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00943 - - csv:101221173 734.176