Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi10g00990 | ATGAGTACCGTAGACTTCAGAGAGAAGGGAATGTATCAGCTGCAGAAGTCAAGAGAAGAACATGCTTCTTCTGCAGCCAGCTTCTGCAAAGAAGTGACCGAGTTGCGCCTTACATCGATAGATTCTCAAGCAGCAACTTCTCGTCCAGAGTTCAAAGGTGTCAATTTCAGGAAAGCTTCAACTGGTGGTTTTGCTAGGGGTCGTAATGATGTACACGAGCTACTCGATTGTACTGTTTGCATGAATTTAATGCATCCTCCAATTTACCAGTGTGCAAATGGGCACACTCTTTGTTCAAGCTGCAAGGCAAGGGTTCAGAACTGTTGCCCTACCTGCCGGCACGAGCTTGGGAACATAAGGTGCCTAGCACTGGAAAAGGTGGCTGAGTCGCTCGAGCTCCCTTGTGCTTACCAAAACCTAGGTTGCATTGACATGTTCCCTTACTACAGCAAGCTTAAACATGAAAAAAACTGTAAATACCGGCCGTACAACTGCCCTTACGCTGGAGGTGAATGTCGTGTAACCGGTGACATTCCATACCTTGTCATGCATCTCAAGGACGATCACGAGGTTGATATGCATGACGGATGTTCCTTCAGCCATAGATATGTCAAATCCAATCCCCAAGAAGTTGAAAATGCTACATGGATGCTTACTGTTTTCAACTGCTTTGGACGACAATTCTGTTTGCATTTTGAAGCATTTCGCTTAGGAACAGCACCTGTTTACATGGCATTCCTCCGGTTCATGGGGGACGATGACGATGCAAAACAATTTTCTTACAGTCTGGAAATTGGTGGAAATGGAAGAAAACTCATCTGGCAAGGTATTCCGAGAAGCATCCGCGATAGCCATCGGAAAGTTCGAGACAGTCACGATGGACTAATCATTCAGAGGAAATTGGCACTATTCTGCTCTGGAAATGAGGGGCTTGAACTGAAGCTAAAGGTTACAGGCCGAATATGGAGAGTGAGGTGA | 978 | 45.81 | MSTVDFREKGMYQLQKSREEHASSAASFCKEVTELRLTSIDSQAATSRPEFKGVNFRKASTGGFARGRNDVHELLDCTVCMNLMHPPIYQCANGHTLCSSCKARVQNCCPTCRHELGNIRCLALEKVAESLELPCAYQNLGCIDMFPYYSKLKHEKNCKYRPYNCPYAGGECRVTGDIPYLVMHLKDDHEVDMHDGCSFSHRYVKSNPQEVENATWMLTVFNCFGRQFCLHFEAFRLGTAPVYMAFLRFMGDDDDAKQFSYSLEIGGNGRKLIWQGIPRSIRDSHRKVRDSHDGLIIQRKLALFCSGNEGLELKLKVTGRIWRVR | 325 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 14238614 | 14241346 | - | Lsi10G009900.1 | Lsi10g00990 | 672547 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi10g00990 | 325 | Pfam | Seven in absentia protein family | 119 | 318 | IPR018121 | GO:0005737|GO:0006511|GO:0007275 | |
Lsi10g00990 | 325 | SUPERFAMILY | TRAF domain-like | 130 | 321 | - | - | |
Lsi10g00990 | 325 | Gene3D | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 186 | 318 | IPR008974 | GO:0005515 | |
Lsi10g00990 | 325 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE SINAT2-LIKE | 26 | 323 | - | - | |
Lsi10g00990 | 325 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 130 | 185 | IPR013083 | - | |
Lsi10g00990 | 325 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 12 | 129 | IPR013083 | - | |
Lsi10g00990 | 325 | SUPERFAMILY | RING/U-box | 61 | 117 | - | - | |
Lsi10g00990 | 325 | ProSiteProfiles | Zinc finger SIAH-type profile. | 130 | 190 | IPR013010 | GO:0008270 | |
Lsi10g00990 | 325 | CDD | RING-HC_SIAHs | 75 | 113 | - | - | |
Lsi10g00990 | 325 | ProSiteProfiles | Zinc finger RING-type profile. | 77 | 113 | IPR001841 | - | |
Lsi10g00990 | 325 | PANTHER | E3 UBIQUITIN PROTEIN LIGASE SIAH | 26 | 323 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi09g01813 | Lsi-Chr9:26927415 | Lsi10g00990 | Lsi-Chr10:14238614 | 1.46E-146 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi10g00990 | K04506 | - | csv:101213438 | 659.833 |