Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00990 ATGAGTACCGTAGACTTCAGAGAGAAGGGAATGTATCAGCTGCAGAAGTCAAGAGAAGAACATGCTTCTTCTGCAGCCAGCTTCTGCAAAGAAGTGACCGAGTTGCGCCTTACATCGATAGATTCTCAAGCAGCAACTTCTCGTCCAGAGTTCAAAGGTGTCAATTTCAGGAAAGCTTCAACTGGTGGTTTTGCTAGGGGTCGTAATGATGTACACGAGCTACTCGATTGTACTGTTTGCATGAATTTAATGCATCCTCCAATTTACCAGTGTGCAAATGGGCACACTCTTTGTTCAAGCTGCAAGGCAAGGGTTCAGAACTGTTGCCCTACCTGCCGGCACGAGCTTGGGAACATAAGGTGCCTAGCACTGGAAAAGGTGGCTGAGTCGCTCGAGCTCCCTTGTGCTTACCAAAACCTAGGTTGCATTGACATGTTCCCTTACTACAGCAAGCTTAAACATGAAAAAAACTGTAAATACCGGCCGTACAACTGCCCTTACGCTGGAGGTGAATGTCGTGTAACCGGTGACATTCCATACCTTGTCATGCATCTCAAGGACGATCACGAGGTTGATATGCATGACGGATGTTCCTTCAGCCATAGATATGTCAAATCCAATCCCCAAGAAGTTGAAAATGCTACATGGATGCTTACTGTTTTCAACTGCTTTGGACGACAATTCTGTTTGCATTTTGAAGCATTTCGCTTAGGAACAGCACCTGTTTACATGGCATTCCTCCGGTTCATGGGGGACGATGACGATGCAAAACAATTTTCTTACAGTCTGGAAATTGGTGGAAATGGAAGAAAACTCATCTGGCAAGGTATTCCGAGAAGCATCCGCGATAGCCATCGGAAAGTTCGAGACAGTCACGATGGACTAATCATTCAGAGGAAATTGGCACTATTCTGCTCTGGAAATGAGGGGCTTGAACTGAAGCTAAAGGTTACAGGCCGAATATGGAGAGTGAGGTGA 978 45.81 MSTVDFREKGMYQLQKSREEHASSAASFCKEVTELRLTSIDSQAATSRPEFKGVNFRKASTGGFARGRNDVHELLDCTVCMNLMHPPIYQCANGHTLCSSCKARVQNCCPTCRHELGNIRCLALEKVAESLELPCAYQNLGCIDMFPYYSKLKHEKNCKYRPYNCPYAGGECRVTGDIPYLVMHLKDDHEVDMHDGCSFSHRYVKSNPQEVENATWMLTVFNCFGRQFCLHFEAFRLGTAPVYMAFLRFMGDDDDAKQFSYSLEIGGNGRKLIWQGIPRSIRDSHRKVRDSHDGLIIQRKLALFCSGNEGLELKLKVTGRIWRVR 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 14238614 14241346 - Lsi10G009900.1 Lsi10g00990 672547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00990 325 Pfam Seven in absentia protein family 119 318 IPR018121 GO:0005737|GO:0006511|GO:0007275
Lsi10g00990 325 SUPERFAMILY TRAF domain-like 130 321 - -
Lsi10g00990 325 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 186 318 IPR008974 GO:0005515
Lsi10g00990 325 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINAT2-LIKE 26 323 - -
Lsi10g00990 325 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 130 185 IPR013083 -
Lsi10g00990 325 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 129 IPR013083 -
Lsi10g00990 325 SUPERFAMILY RING/U-box 61 117 - -
Lsi10g00990 325 ProSiteProfiles Zinc finger SIAH-type profile. 130 190 IPR013010 GO:0008270
Lsi10g00990 325 CDD RING-HC_SIAHs 75 113 - -
Lsi10g00990 325 ProSiteProfiles Zinc finger RING-type profile. 77 113 IPR001841 -
Lsi10g00990 325 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 26 323 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g01813 Lsi-Chr9:26927415 Lsi10g00990 Lsi-Chr10:14238614 1.46E-146 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00990 K04506 - csv:101213438 659.833