Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00992 ATGGTTGGTTCTGTGAGTGCTCAACTTAGCTCCACATTCTACGACACCACTTGTCCCAATGTATCAAGTGTTGTGCATGGTGTTGTAGAGCAAGCTCTTCAAAGTGATGACAGAGCCGGTGCCAAACTCATCCGTCTCCATTTTCACGATTGTTTCGTCGACGGTTGTGATGGGTCAGTGTTGTTAGAGGACCAAGATGGTATAGTGAGCGAATTGGGTGCGCCTGGAAACGGAGGCATCACTGGTTTCAATATTGTTAATGACATCAAAACTGCGGTTGAGAATGTTTGTCCAGGTGTTGTCTCCTGTGCTGACATTCTAGCCCTTTCTTCTCGAGATGCTGTCACCTTGGCGGGAGGACAGGGTTGGACGGTTCAATTGGGAAGAAGAGATAGTAGAACAGCAAATTTACAAGGAGCCCGGGATAGGCTCCCAAGTCCTTTTGAGAATCTCTCCCAACTTCAACAAAAGTTTAGGGATGTTCAACTCGACGACAATACCGATCTCGTTGCTCTATCAGGTGCACACACATTCGGGCGTTCGAGATGCAGATTCTTCGACGGACGACTAAACACATCGAACCCAGACCCTACCCTGGACTCGACGTACGCGGATCAACTCCGACAAAATTGTCAGCCAGGGCGAGACACATTCGTGAATCTAGACCCGACTACGCCAGACACATTCGACAGGAACTACTACACAAATCTTCAAAACAACCAAGGACTTTTGGGAAGTGACCAAGTTTTGTTCTCCACTAGCGGAGCTCCAACTATCAGTACTGTCAACAACTTTGCCAACAGCCAGAGCGCATTCTTCACCGCCTTTGCTCAGTCAATGATTAATATGGGAAATCTCAGCCCTTTGACTGGAACCAGCGGAGAAATCAGGACCAATTGCAGAAGACTCAATTAA 915 47.65 MVGSVSAQLSSTFYDTTCPNVSSVVHGVVEQALQSDDRAGAKLIRLHFHDCFVDGCDGSVLLEDQDGIVSELGAPGNGGITGFNIVNDIKTAVENVCPGVVSCADILALSSRDAVTLAGGQGWTVQLGRRDSRTANLQGARDRLPSPFENLSQLQQKFRDVQLDDNTDLVALSGAHTFGRSRCRFFDGRLNTSNPDPTLDSTYADQLRQNCQPGRDTFVNLDPTTPDTFDRNYYTNLQNNQGLLGSDQVLFSTSGAPTISTVNNFANSQSAFFTAFAQSMINMGNLSPLTGTSGEIRTNCRRLN 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 14247047 14248535 - Lsi10G009920.1 Lsi10g00992 672549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00992 304 CDD secretory_peroxidase 8 302 IPR033905 GO:0004601|GO:0042744
Lsi10g00992 304 PANTHER PEROXIDASE 72-RELATED 5 304 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g00992 304 SUPERFAMILY Heme-dependent peroxidases 8 304 IPR010255 GO:0004601|GO:0006979|GO:0020037
Lsi10g00992 304 PRINTS Haem peroxidase superfamily signature 119 131 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi10g00992 304 PRINTS Haem peroxidase superfamily signature 168 183 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi10g00992 304 PRINTS Haem peroxidase superfamily signature 101 118 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi10g00992 304 PRINTS Haem peroxidase superfamily signature 222 237 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi10g00992 304 PRINTS Haem peroxidase superfamily signature 40 54 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi10g00992 304 PANTHER PEROXIDASE 58 5 304 - -
Lsi10g00992 304 ProSiteProfiles Plant heme peroxidase family profile. 8 304 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi10g00992 304 ProSitePatterns Peroxidases proximal heme-ligand signature. 168 178 IPR019793 -
Lsi10g00992 304 ProSitePatterns Peroxidases active site signature. 40 51 IPR019794 GO:0004601
Lsi10g00992 304 Gene3D - 13 304 - -
Lsi10g00992 304 Gene3D Peroxidase, domain 2 145 283 - -
Lsi10g00992 304 Pfam Peroxidase 27 268 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi10g00992 304 PRINTS Plant peroxidase signature 119 134 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g00992 304 PRINTS Plant peroxidase signature 278 291 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g00992 304 PRINTS Plant peroxidase signature 236 253 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g00992 304 PRINTS Plant peroxidase signature 18 37 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g00992 304 PRINTS Plant peroxidase signature 81 94 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g00992 304 PRINTS Plant peroxidase signature 220 235 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g00992 304 PRINTS Plant peroxidase signature 42 62 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g00992 304 PRINTS Plant peroxidase signature 167 179 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g00992 304 PRINTS Plant peroxidase signature 100 110 IPR000823 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi10g00992 Lsi-Chr10:14247047 Lsi10g01001 Lsi-Chr10:14314316 2.22E-138 dispersed
Lsi10g00995 Lsi-Chr10:14264396 Lsi10g00992 Lsi-Chr10:14247047 2.83E-86 dispersed
Lsi10g00992 Lsi-Chr10:14247047 Lsi10g00994 Lsi-Chr10:14259277 8.19E-65 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00992 K00430 - csv:101212957 511.916