Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00995 ATGAAGGACGTGCTTTATGCACACAATCCCTCACCAAAACAAAACAGAATAATGGCTTCCTTCTTCAAAGTTGCTTTCTTTTTGTTTGTGGGGTTCATGGTTGAAGCTTCTAAAGCTCAGCTTTGCCCCACGTTTTACGACGACTCATGCCCCGACGTATTCGACATTGTGCGTGGTGTGGTGCAGCAGGCTTTGGAGACCGACGACCGTGCTGGTGCTAGACTCATTCGCCTCCATTTTCACGACTGCTTCGTTGATGGGTGTGATGGGTCAGTTTTACTTGTGGACCAAACTGGCGTAGTGAGCGAGCTTGGCGCTCCTGGAAACGCCAATATTACCGGATTTAACATTGTTAATGACATTAAAGCTGCACTCGAGGAGGCTTGTCCTGGAGTTGTTTCATGTGCCGACATCTTAGCCATAGCTTCTGTGGAATCAGTTTCTTTGGCAGGAGGACCGTGTTGGGAGGTTCAACTAGGAAGAAGAGACAGCAGAACGGCGAACTTACAAGGCGCAATCGATGGACTTCCAAGTCCCTTCGAAAATGTTACAGTACTTAAACGCAAGTTTGGTAGAGTAGGTCTTGATTCTACTGATCTTGTCGCCTTATCTGACAAAGACACTTCAGCCTACACTAGTATTGTAGCGACGTGCATGGCTGCTTCTCTTTATTCCTCTCTCTCATCATCCACATACTACTAA 702 46.87 MKDVLYAHNPSPKQNRIMASFFKVAFFLFVGFMVEASKAQLCPTFYDDSCPDVFDIVRGVVQQALETDDRAGARLIRLHFHDCFVDGCDGSVLLVDQTGVVSELGAPGNANITGFNIVNDIKAALEEACPGVVSCADILAIASVESVSLAGGPCWEVQLGRRDSRTANLQGAIDGLPSPFENVTVLKRKFGRVGLDSTDLVALSDKDTSAYTSIVATCMAASLYSSLSSSTYY 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 14264396 14267854 - Lsi10G009950.1 Lsi10g00995 672552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00995 233 SUPERFAMILY Heme-dependent peroxidases 40 204 IPR010255 GO:0004601|GO:0006979|GO:0020037
Lsi10g00995 233 Pfam Peroxidase 57 204 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi10g00995 233 ProSiteProfiles Plant heme peroxidase family profile. 40 218 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi10g00995 233 PANTHER PEROXIDASE 72-RELATED 28 208 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g00995 233 Gene3D Peroxidase, domain 2 178 210 - -
Lsi10g00995 233 PANTHER PEROXIDASE 58 28 208 - -
Lsi10g00995 233 ProSitePatterns Peroxidases active site signature. 72 83 IPR019794 GO:0004601
Lsi10g00995 233 PRINTS Haem peroxidase superfamily signature 199 214 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi10g00995 233 PRINTS Haem peroxidase superfamily signature 72 86 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi10g00995 233 PRINTS Haem peroxidase superfamily signature 133 150 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi10g00995 233 PRINTS Haem peroxidase superfamily signature 151 163 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi10g00995 233 Gene3D - 44 177 - -
Lsi10g00995 233 PRINTS Plant peroxidase signature 74 94 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g00995 233 PRINTS Plant peroxidase signature 151 166 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g00995 233 PRINTS Plant peroxidase signature 50 69 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g00995 233 PRINTS Plant peroxidase signature 198 210 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g00995 233 PRINTS Plant peroxidase signature 113 126 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g00995 233 PRINTS Plant peroxidase signature 132 142 IPR000823 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi10g00995 Lsi-Chr10:14264396 Lsi10g00992 Lsi-Chr10:14247047 2.83E-86 dispersed
Lsi10g00995 Lsi-Chr10:14264396 Lsi10g00996 Lsi-Chr10:14274218 1.56E-72 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00995 K00430 - csv:101212717 322.783