Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00996 ATGGCCTCCGCCAATGCCGTAGCTTCCTTTTTCATTCTGGCTCTTCTCTTCGGAGGCTCTTTAGCTCAACTCTCCGAGACCTTTTACGACCAAACATGTCCTCGCCTCCCCAACATTGTCCGTGCCTCCGTCAAGAGAGCTATTGAAACCGACATCCGTGCCGGTGCTAAACTCATCCGCCTCCATTTCCACGATTGCTTCGTCAATGGATGCGATGGCTCTGTTTTACTAGAGGATGCTCCCGGTATAGTCAGTGAGCTCAACTCACCTGGAAATCAAGGAATCCAAGGACTTGAGATTGTCGACGCCATTAAAGCCGACGTTGAGAGGGAATGTCCCGGCATCGTCTCCTGTGCCGACATCCTAGCTCAAGCGTCCAAGGACTCTGTCGATGTGCAAGGAGGGCCTAGTTGGAGAGTGTTATACGGAAGACGAGACAGTAGAATAGCAAACAAAACAGGGGCGGATAGTGGGTTGGCCAGTCCCTTCGAAACTCTGGACCAACTGAAAGCCAAATTTGCTGCTGTTGGCCTCGGTACCACTGATCTCGTCGCTTTATCAGGAGCGCATACGTTTGGTCGATCGAGATGCAGATTCTTTAGCCAACGATTTGCGAATTTCAACAACACGGGAAGCCCAGACCCATCACTGGACGCTAACTACAGGCGATTCCTTGAAGGGGTTTGCTCAGCAGGTCCAGACACAAGAGCCAATTTCGACCCAGTAACACCAGACGTGTTCGACAAAAACTACTACACAAACCTTCAAGTGGGGAAGGGGCTTCTGCAGAGCGATCAAGAGTTATTCTCTACTCCCGGGGCTGACACCATCGCCATTGTCAACAGCTTCGCAGCCAGAGAAGGCACCTTCTTCAAGGAGTTCCGACAGTCCATGATCAACATGGGAAACATCAAGCCTTTGACTGGCAGCCGTGGAGAAATCAGAAGAAACTGCAGGAGAGTCAACTCTGGGTTGGGTGGAGAAGGCCATGATGTTATGTAA 1002 51.1 MASANAVASFFILALLFGGSLAQLSETFYDQTCPRLPNIVRASVKRAIETDIRAGAKLIRLHFHDCFVNGCDGSVLLEDAPGIVSELNSPGNQGIQGLEIVDAIKADVERECPGIVSCADILAQASKDSVDVQGGPSWRVLYGRRDSRIANKTGADSGLASPFETLDQLKAKFAAVGLGTTDLVALSGAHTFGRSRCRFFSQRFANFNNTGSPDPSLDANYRRFLEGVCSAGPDTRANFDPVTPDVFDKNYYTNLQVGKGLLQSDQELFSTPGADTIAIVNSFAAREGTFFKEFRQSMINMGNIKPLTGSRGEIRRNCRRVNSGLGGEGHDVM 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 14274218 14275467 - Lsi10G009960.1 Lsi10g00996 672553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00996 333 Gene3D - 28 322 - -
Lsi10g00996 333 Pfam Peroxidase 40 285 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi10g00996 333 PANTHER PEROXIDASE 58 13 322 - -
Lsi10g00996 333 Gene3D Peroxidase, domain 2 160 301 - -
Lsi10g00996 333 PANTHER PEROXIDASE 72-RELATED 13 322 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g00996 333 ProSitePatterns Peroxidases active site signature. 55 66 IPR019794 GO:0004601
Lsi10g00996 333 PRINTS Haem peroxidase superfamily signature 55 69 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi10g00996 333 PRINTS Haem peroxidase superfamily signature 116 133 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi10g00996 333 PRINTS Haem peroxidase superfamily signature 134 146 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi10g00996 333 PRINTS Haem peroxidase superfamily signature 182 197 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi10g00996 333 PRINTS Haem peroxidase superfamily signature 240 255 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi10g00996 333 PRINTS Plant peroxidase signature 134 149 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g00996 333 PRINTS Plant peroxidase signature 181 193 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g00996 333 PRINTS Plant peroxidase signature 96 109 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g00996 333 PRINTS Plant peroxidase signature 115 125 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g00996 333 PRINTS Plant peroxidase signature 254 271 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g00996 333 PRINTS Plant peroxidase signature 33 52 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g00996 333 PRINTS Plant peroxidase signature 57 77 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g00996 333 PRINTS Plant peroxidase signature 238 253 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g00996 333 PRINTS Plant peroxidase signature 296 309 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g00996 333 ProSitePatterns Peroxidases proximal heme-ligand signature. 182 192 IPR019793 -
Lsi10g00996 333 ProSiteProfiles Plant heme peroxidase family profile. 23 322 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi10g00996 333 CDD secretory_peroxidase 23 321 IPR033905 GO:0004601|GO:0042744
Lsi10g00996 333 SUPERFAMILY Heme-dependent peroxidases 23 322 IPR010255 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi10g00996 Lsi-Chr10:14274218 Lsi10g00998 Lsi-Chr10:14291994 9.84E-179 dispersed
Lsi10g01003 Lsi-Chr10:14330501 Lsi10g00996 Lsi-Chr10:14274218 1.74E-96 dispersed
Lsi10g00994 Lsi-Chr10:14259277 Lsi10g00996 Lsi-Chr10:14274218 7.73E-50 proximal
Lsi10g00995 Lsi-Chr10:14264396 Lsi10g00996 Lsi-Chr10:14274218 1.56E-72 tandem
Lsi10g00996 Lsi-Chr10:14274218 Lsi10g00997 Lsi-Chr10:14284928 1.50E-144 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00996 K00430 - csv:101217781 607.06