Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00998 ATGGGGTCTTTCAGTTTATTGCTTTTGTTTGTGGGTGTTTTGTTTGGAAGCTCTTATGCCCAACTCAGCGAGAACTTCTACGACCAAACTTGCCCTCGTCTCCCTAACATTGTCCGCCGTGAGGTCAAGAGAGCTATTGAAACCGACATCCGTGCCGGGGCGAAACTCATTCGCTTCCATTTCCACGACTGCTTCGTTCAAGGATGCGATGGCTCTGTTTTGCTAGAAGATGCTCCAGGCATTGTGAGTGAGCTTAACGGACTTGGAAATTTAGGAATCCAAGGACTCGAGATTGTCGACGCCATCAAAACTGCTGTCGAGGAGGAATGTCCCGGCGTTGTCTCATGTGCCGACATCCTAGCTCAGGCCTCTAAAGACTCTGTCGACGTGCAAGGAGGACCTAGTTGGAGAGTTTTATACGGAAGAAGAGATAGCAGAACAGCCAATAAAACAGGGGCTGATGAACTTCCAAGTCCCTTCGAAACTCTTGACCCACTCAAAAAAAAGTTCGAAGCCGTTGGCTTGGATTCCACTGATCTTGTTGCTCTATCAGGAGCACATACATTTGGTCGGTCGAGATGCTTGTTCTTCAGTGACCGTTTGTCCAACTTCAGTGGGAGTGGGCAGCCAGATCCGACCCTAGATCCAACCTACAGGCAAGAACTGTTAAGAGCTTGTACAAATCAAGAAACACGAGTGAATTTCGATCCAACAACACCAGACACATTTGACAAAAATTACTACACCAATCTTCAAACCAATCGAGGGCTTCTACTGAGCGACCAAGTTCTATTCTCAACTCAAGGGGCCGACACAATTGAGATTGTCAACCGTCTTGGATCGCGAGAAGGCACTTTCTTTAGACAATTTCGGCTCTCCATGATTAAGATGGGAAATATTAGACCCTTAACTGGAACCCAAGGAGAAATCAGAAGAAACTGCAGGAGGGTTAATGACTTGGGAGGTGAAGCAGGACATGATGTTATGTAA 990 46.77 MGSFSLLLLFVGVLFGSSYAQLSENFYDQTCPRLPNIVRREVKRAIETDIRAGAKLIRFHFHDCFVQGCDGSVLLEDAPGIVSELNGLGNLGIQGLEIVDAIKTAVEEECPGVVSCADILAQASKDSVDVQGGPSWRVLYGRRDSRTANKTGADELPSPFETLDPLKKKFEAVGLDSTDLVALSGAHTFGRSRCLFFSDRLSNFSGSGQPDPTLDPTYRQELLRACTNQETRVNFDPTTPDTFDKNYYTNLQTNRGLLLSDQVLFSTQGADTIEIVNRLGSREGTFFRQFRLSMIKMGNIRPLTGTQGEIRRNCRRVNDLGGEAGHDVM 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 14291994 14294328 - Lsi10G009980.1 Lsi10g00998 672555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00998 329 ProSitePatterns Peroxidases proximal heme-ligand signature. 179 189 IPR019793 -
Lsi10g00998 329 Gene3D - 26 318 - -
Lsi10g00998 329 SUPERFAMILY Heme-dependent peroxidases 21 318 IPR010255 GO:0004601|GO:0006979|GO:0020037
Lsi10g00998 329 ProSiteProfiles Plant heme peroxidase family profile. 21 318 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi10g00998 329 PRINTS Plant peroxidase signature 113 123 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g00998 329 PRINTS Plant peroxidase signature 132 147 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g00998 329 PRINTS Plant peroxidase signature 94 107 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g00998 329 PRINTS Plant peroxidase signature 55 75 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g00998 329 PRINTS Plant peroxidase signature 178 190 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g00998 329 PRINTS Plant peroxidase signature 31 50 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g00998 329 PRINTS Plant peroxidase signature 234 249 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g00998 329 PRINTS Plant peroxidase signature 250 267 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g00998 329 PRINTS Plant peroxidase signature 292 305 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g00998 329 PANTHER PEROXIDASE 72-RELATED 9 318 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g00998 329 CDD secretory_peroxidase 21 317 IPR033905 GO:0004601|GO:0042744
Lsi10g00998 329 Pfam Peroxidase 38 278 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi10g00998 329 PRINTS Haem peroxidase superfamily signature 53 67 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi10g00998 329 PRINTS Haem peroxidase superfamily signature 179 194 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi10g00998 329 PRINTS Haem peroxidase superfamily signature 236 251 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi10g00998 329 PRINTS Haem peroxidase superfamily signature 132 144 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi10g00998 329 PRINTS Haem peroxidase superfamily signature 114 131 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi10g00998 329 Gene3D Peroxidase, domain 2 157 297 - -
Lsi10g00998 329 PANTHER PEROXIDASE 58 9 318 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi10g00996 Lsi-Chr10:14274218 Lsi10g00998 Lsi-Chr10:14291994 9.84E-179 dispersed
Lsi10g00998 Lsi-Chr10:14291994 Lsi10g01001 Lsi-Chr10:14314316 3.43E-156 dispersed
Lsi10g00997 Lsi-Chr10:14284928 Lsi10g00998 Lsi-Chr10:14291994 0 tandem
Lsi10g00998 Lsi-Chr10:14291994 Lsi10g00999 Lsi-Chr10:14299747 5.40E-141 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00998 K00430 - csv:101212230 497.278