Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00999 ATGTCGAGAAGCTACCTTTGCACAACTTGGTCTTATCTCCAAAACCATAACCCAATTGCATTCTTAAAAATGGCTTCCCTTAAACTGGCAGCCATTTTTGTGGCGGCTGCTTTCATGCTATCACCCTCTCACGCCCAGCTTTCCCCTTTCTTCTACGCCCAATCATGCCCTCAGCTGCCTTTCATTGTTCTCAACGTCGTTTCTCGAGCTTTACAAAATGACGACCGAGCCGCTGCCAAGCTCATTCGCCTCCATTTCCACGATTGCTTCGTCAATGGATGTGATGGATCTGTACTATTGGTGGATGTACCGGGTGTCATCGACAGTGAACTAAACGGACCTCCAAATGGTGGAATCCAAGGGATGGATATCGTGGATAACATCAAAGCAGCAGTTGAAAGCGCTTGCCCTGGCGTTGTTTCTTGCGCTGACATCTTAGCGATTTCTGCTCAAATCTCTGTTTTTTTGTCGGGAGGACCAATTTGGGTAGTACCAATGGGAAGAAAAGACAGCAGGATAGCGAATAGAACCGGAACCTCAAACCTGCCTGGTCCTTCAGAAACACTAAATGGACTTAAAGCCAAGTTTGGGGTTCATGGGCTTGATTCTACGGATCTGGTGGCTCTATCAGGAGCCCATACATTCGGGCGATCAAGATGCCTTTTCTTCAGTGATCGCTTCGGCAACTTCAACAACACCGGAAGACCCGACCCGACGCTTGACCCGGTATACAGGGAGCAGCTTCGAAGACTCTGTACGACTCAACAGATACGAGTGAATTTCGATCCAATCACACCCACCAGATTCGACAAGGCGTATTACACTAATCTGGTCAGCCTAAGGGGGCTTCTCCAAAGCGACCAAGAGCTGTTCTCAACTCCCAGAGCTGATACGACTGCCATCGTCAGAAGCTTTGCTGCCAACGAACGTGCCTTCTTTAAACAATTTGTGAAATCAATGATCAAAATGGGCAACCTCAAGCCTCCGCCTGGCATAGCATCAGAAGTCAGATTGGACTGTAAGAGGGTCAACCCGGTGAGGGCCTACGACGTTATGTAA 1059 48.54 MSRSYLCTTWSYLQNHNPIAFLKMASLKLAAIFVAAAFMLSPSHAQLSPFFYAQSCPQLPFIVLNVVSRALQNDDRAAAKLIRLHFHDCFVNGCDGSVLLVDVPGVIDSELNGPPNGGIQGMDIVDNIKAAVESACPGVVSCADILAISAQISVFLSGGPIWVVPMGRKDSRIANRTGTSNLPGPSETLNGLKAKFGVHGLDSTDLVALSGAHTFGRSRCLFFSDRFGNFNNTGRPDPTLDPVYREQLRRLCTTQQIRVNFDPITPTRFDKAYYTNLVSLRGLLQSDQELFSTPRADTTAIVRSFAANERAFFKQFVKSMIKMGNLKPPPGIASEVRLDCKRVNPVRAYDVM 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 14299747 14304724 - Lsi10G009990.1 Lsi10g00999 672556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00999 352 ProSitePatterns Peroxidases active site signature. 78 89 IPR019794 GO:0004601
Lsi10g00999 352 PRINTS Haem peroxidase superfamily signature 78 92 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi10g00999 352 PRINTS Haem peroxidase superfamily signature 205 220 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi10g00999 352 PRINTS Haem peroxidase superfamily signature 262 277 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi10g00999 352 PRINTS Haem peroxidase superfamily signature 140 157 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi10g00999 352 PRINTS Haem peroxidase superfamily signature 158 170 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi10g00999 352 Gene3D - 51 344 - -
Lsi10g00999 352 PRINTS Plant peroxidase signature 120 133 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g00999 352 PRINTS Plant peroxidase signature 158 173 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g00999 352 PRINTS Plant peroxidase signature 318 331 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g00999 352 PRINTS Plant peroxidase signature 139 149 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g00999 352 PRINTS Plant peroxidase signature 56 75 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g00999 352 PRINTS Plant peroxidase signature 80 100 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g00999 352 PRINTS Plant peroxidase signature 276 293 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g00999 352 PRINTS Plant peroxidase signature 260 275 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g00999 352 PRINTS Plant peroxidase signature 204 216 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g00999 352 PANTHER PEROXIDASE 58 38 344 - -
Lsi10g00999 352 Gene3D Peroxidase, domain 2 183 323 - -
Lsi10g00999 352 ProSiteProfiles Plant heme peroxidase family profile. 46 344 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi10g00999 352 Pfam Peroxidase 65 308 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi10g00999 352 CDD secretory_peroxidase 46 343 IPR033905 GO:0004601|GO:0042744
Lsi10g00999 352 SUPERFAMILY Heme-dependent peroxidases 46 345 IPR010255 GO:0004601|GO:0006979|GO:0020037
Lsi10g00999 352 PANTHER PEROXIDASE 72-RELATED 38 344 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g00999 352 ProSitePatterns Peroxidases proximal heme-ligand signature. 205 215 IPR019793 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi10g00999 Lsi-Chr10:14299747 Lsi10g01001 Lsi-Chr10:14314316 2.19E-150 dispersed
Lsi10g00998 Lsi-Chr10:14291994 Lsi10g00999 Lsi-Chr10:14299747 5.40E-141 tandem
Lsi10g00999 Lsi-Chr10:14299747 Lsi10g01000 Lsi-Chr10:14304977 8.35E-176 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00999 K00430 - csv:101211989 595.504