Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g01000 ATGGCTTCCCCTAAATTTACAGCCTTGGTTGCGGTCGTAGCTTTGATGCTTGGATCCTCTCAGGCTCAGCTTAACCCTTTCTTCTACACCTTCACATGCCCTCAGCTCCCTTTTGTCATTCTAAATGTTGTCTCACAAGCTCTCCAAACCGATGATCGAGCAGCTGCCAAACTCATTCGTCTTCACTTTCACGATTGCTTCGTCAATGGGTGTGACGGGTCTGTGCTATTGGAAGATGTACCAGGCGTTATCGACAGTGAATTAAACGCACCTCCCAACAACGGAATCCAAGGGCTTGACATTGTGGACAACATCAAAGCAGCAGTTGAAAGCGCTTGTCCAGGCGTTGTTTCTTGTGCTGACATCTTAGCCCTTTCAGCTCAAATTTCTGTCGTATTGTCCGGAGGGCCGGCGTGGGTTGTTCCACTGGGAAGAAAAGACAGCAGAGCAGCAAATAGAGCCGCAGCGGCAAATCTTCCGAGCCCGTTCGAAACTCTAGATGTGCTGAAAGCCAAATTCGCAGCACTTGGGCTGGGTTCAACGGATCTTGTAACTCTATCAGGAGCCCACACGTTTGGCCGATCAAGATGCCTATTTTTCTCAGGACGGTTTGACAATTTCAACAACACCGGCCTCCCAGACCCGACTCTGGACGCTGCTTACAGGGAGCAGCTCCGCCAAGCTTGTACAACTCCAGTAACGCGAGTAAGCTTTGATCCAATCACACCAGACACCTTCGATAAAAACTATTACATCAATCTCCAAAACCACAAAGGGCTTCTCCAAAGTGATCAAGAGCTTTTCTCAACTCCTGGAGCTGATACAACTGCCATTGTCAACACATTTGCCGCCAGCCAGCTTCTTTTCTTTATTCAATTTGGGAATTCCATGATCAAAATGGGAAATTTGAGCCCTCCACCTGGCATCCCATCTGAAGTCAGATTGAACTGTAGGAAAGTCAACCCACCCACTGCCTTCCATGATGTTATCTAA 993 48.14 MASPKFTALVAVVALMLGSSQAQLNPFFYTFTCPQLPFVILNVVSQALQTDDRAAAKLIRLHFHDCFVNGCDGSVLLEDVPGVIDSELNAPPNNGIQGLDIVDNIKAAVESACPGVVSCADILALSAQISVVLSGGPAWVVPLGRKDSRAANRAAAANLPSPFETLDVLKAKFAALGLGSTDLVTLSGAHTFGRSRCLFFSGRFDNFNNTGLPDPTLDAAYREQLRQACTTPVTRVSFDPITPDTFDKNYYINLQNHKGLLQSDQELFSTPGADTTAIVNTFAASQLLFFIQFGNSMIKMGNLSPPPGIPSEVRLNCRKVNPPTAFHDVI 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 14304977 14306270 - Lsi10G010000.1 Lsi10g01000 672557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g01000 330 SUPERFAMILY Heme-dependent peroxidases 23 322 IPR010255 GO:0004601|GO:0006979|GO:0020037
Lsi10g01000 330 Gene3D Peroxidase, domain 2 160 300 - -
Lsi10g01000 330 Gene3D - 28 321 - -
Lsi10g01000 330 ProSitePatterns Peroxidases active site signature. 55 66 IPR019794 GO:0004601
Lsi10g01000 330 ProSiteProfiles Plant heme peroxidase family profile. 23 321 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi10g01000 330 CDD secretory_peroxidase 23 320 IPR033905 GO:0004601|GO:0042744
Lsi10g01000 330 PANTHER PEROXIDASE 72-RELATED 15 321 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g01000 330 Pfam Peroxidase 43 285 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi10g01000 330 PRINTS Haem peroxidase superfamily signature 182 197 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi10g01000 330 PRINTS Haem peroxidase superfamily signature 55 69 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi10g01000 330 PRINTS Haem peroxidase superfamily signature 135 147 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi10g01000 330 PRINTS Haem peroxidase superfamily signature 117 134 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi10g01000 330 PRINTS Haem peroxidase superfamily signature 239 254 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi10g01000 330 ProSitePatterns Peroxidases proximal heme-ligand signature. 182 192 IPR019793 -
Lsi10g01000 330 PANTHER PEROXIDASE 58 15 321 - -
Lsi10g01000 330 PRINTS Plant peroxidase signature 295 308 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g01000 330 PRINTS Plant peroxidase signature 181 193 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g01000 330 PRINTS Plant peroxidase signature 33 52 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g01000 330 PRINTS Plant peroxidase signature 57 77 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g01000 330 PRINTS Plant peroxidase signature 116 126 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g01000 330 PRINTS Plant peroxidase signature 97 110 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g01000 330 PRINTS Plant peroxidase signature 135 150 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g01000 330 PRINTS Plant peroxidase signature 237 252 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g01000 330 PRINTS Plant peroxidase signature 253 270 IPR000823 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi10g01000 Lsi-Chr10:14304977 Lsi10g01002 Lsi-Chr10:14323027 7.97E-142 dispersed
Lsi10g00999 Lsi-Chr10:14299747 Lsi10g01000 Lsi-Chr10:14304977 8.35E-176 tandem
Lsi10g01000 Lsi-Chr10:14304977 Lsi10g01001 Lsi-Chr10:14314316 1.65E-160 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g01000 K00430 - csv:101211752 609.372