Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g01001 ATGGAAATGGCTTCTTCTAAGTTTAGACTAGTCTTAGCGTTGCTTTGGTTAGTGGGTTTAATGGTGGGAGGCTCTTTGGCTCAGCTAAACCCTTCATTTTACGCCAAAACATGTCCTAATTTACCCAAAATTGTGAATGATGTGGTTGCTCAGGCTCTGCGAACCGATGCTCGAGCTGGAGCCAAGCTCATTCGCCTCCATTTTCATGACTGCTTTGTTGACGGGTGCGATGCATCTGTTTTGCTAGAGAACGCACCAGGCATAGACAGTGAACTTGATGCACCTGGAAACCAAGGGATTCAAGGTCTTAACATTGTCGACGACATCAAATCTGCTGTGGAAAAGGCTTGCCCTCGTACTGTCTCTTGTGCTGACATCTTAGCCATTGCCTCCAAAGAATCTGTTGTATTGGCTGGCGGGCCGAGCTGGATTGTGCCACTGGGACGAAGAGACAGCAGAACAGCCAATAGAGAAGGAGCCTCAAACAACCTTGCCAGTCCCTTCGAAGACCTCGATACACTCAAAGCCAAGTTTGGTGTTTTTGGCCTGAATTCCACTGATCTTGTGGCTTTGTCTGGAGCACATACATTTGGGCGTTCAAGATGCGCATTTTTCAGCCAGCGATTCGCCAACTTCAACGGCACGAACAAGCCAGATCCGACCCTAGACCCAGCCTACAGAGAGCAGCTCCGAAAAATTTGCTCTAGTGGCTCAGAGACGCGGGCCAATTTCGACCCGACAACTCCAGACAAATTTGACAAAAACTATTACACCAACCTTCAGGGGCTTCGGGGGCTGCTGCAGAGCGATCAAGAACTGTTCTCAACGCGCGGGGCTGACACGGTGGCCATTGTGAACCGGTTTGCCAAAAGCCAAGGCCAATTCTTCAAAAGTTTTGGTGTGTCTATGATTAAAATGGGAAATATTACACCTTTAACTGGAACTAAAGGAGAGATTAGATTGAACTGTAGGAGGGTGAATCCAACAAGGCCCAGAGGTGATGAGGGTCATGATGTTATGTAA 1023 48.09 MEMASSKFRLVLALLWLVGLMVGGSLAQLNPSFYAKTCPNLPKIVNDVVAQALRTDARAGAKLIRLHFHDCFVDGCDASVLLENAPGIDSELDAPGNQGIQGLNIVDDIKSAVEKACPRTVSCADILAIASKESVVLAGGPSWIVPLGRRDSRTANREGASNNLASPFEDLDTLKAKFGVFGLNSTDLVALSGAHTFGRSRCAFFSQRFANFNGTNKPDPTLDPAYREQLRKICSSGSETRANFDPTTPDKFDKNYYTNLQGLRGLLQSDQELFSTRGADTVAIVNRFAKSQGQFFKSFGVSMIKMGNITPLTGTKGEIRLNCRRVNPTRPRGDEGHDVM 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 14314316 14315642 - Lsi10G010010.1 Lsi10g01001 672558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g01001 340 PANTHER PEROXIDASE 58 20 327 - -
Lsi10g01001 340 Pfam Peroxidase 46 291 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi10g01001 340 ProSitePatterns Peroxidases proximal heme-ligand signature. 187 197 IPR019793 -
Lsi10g01001 340 Gene3D Peroxidase, domain 2 165 306 - -
Lsi10g01001 340 ProSitePatterns Peroxidases active site signature. 60 71 IPR019794 GO:0004601
Lsi10g01001 340 CDD secretory_peroxidase 28 326 IPR033905 GO:0004601|GO:0042744
Lsi10g01001 340 ProSiteProfiles Plant heme peroxidase family profile. 28 327 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi10g01001 340 Gene3D - 33 327 - -
Lsi10g01001 340 PRINTS Haem peroxidase superfamily signature 121 138 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi10g01001 340 PRINTS Haem peroxidase superfamily signature 245 260 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi10g01001 340 PRINTS Haem peroxidase superfamily signature 60 74 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi10g01001 340 PRINTS Haem peroxidase superfamily signature 187 202 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi10g01001 340 PRINTS Haem peroxidase superfamily signature 139 151 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi10g01001 340 SUPERFAMILY Heme-dependent peroxidases 28 328 IPR010255 GO:0004601|GO:0006979|GO:0020037
Lsi10g01001 340 PANTHER PEROXIDASE 72-RELATED 20 327 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g01001 340 PRINTS Plant peroxidase signature 120 130 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g01001 340 PRINTS Plant peroxidase signature 259 276 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g01001 340 PRINTS Plant peroxidase signature 38 57 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g01001 340 PRINTS Plant peroxidase signature 62 82 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g01001 340 PRINTS Plant peroxidase signature 101 114 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g01001 340 PRINTS Plant peroxidase signature 186 198 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g01001 340 PRINTS Plant peroxidase signature 301 314 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g01001 340 PRINTS Plant peroxidase signature 243 258 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g01001 340 PRINTS Plant peroxidase signature 139 154 IPR000823 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi10g00992 Lsi-Chr10:14247047 Lsi10g01001 Lsi-Chr10:14314316 2.22E-138 dispersed
Lsi10g00997 Lsi-Chr10:14284928 Lsi10g01001 Lsi-Chr10:14314316 6.22E-128 dispersed
Lsi10g00998 Lsi-Chr10:14291994 Lsi10g01001 Lsi-Chr10:14314316 3.43E-156 dispersed
Lsi10g00999 Lsi-Chr10:14299747 Lsi10g01001 Lsi-Chr10:14314316 2.19E-150 dispersed
Lsi10g01000 Lsi-Chr10:14304977 Lsi10g01001 Lsi-Chr10:14314316 1.65E-160 tandem
Lsi10g01001 Lsi-Chr10:14314316 Lsi10g01002 Lsi-Chr10:14323027 1.40E-154 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g01001 K00430 - csv:101211507 573.548