Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g01002 ATGTGTACCACAAACATGTCGTCTTTTAAAGTTGCAGCCTTAGCCTTGTTCTTGTGTATGATGTTGAGAGGGTCTTCCGCCCAACTCAGCCCTACCTTCTACGACCAATCTTGCCCTAATCTAACCGCCATCGTCAGAGATGCTATAAGCCAGGCATTGCAGGGAGACGTTAGAGCCGGAGCCAAACTCATTCGCTTTCACTTCCACGATTGTTTCGTCAATGGTTGTGATGGGTCAGTTCTACTAGAGAATCAAGATGGTGTACAAAGCGAGTTAGATGCTCCAGGGAACCAAGGAATACAAGGCTTCGACATCGTCGACAACATAAAAGCTGCAATTGAAGCTGCCTGCCCGAATACCGTGTCTTGTGCTGATATCTTAGCCATTTCAGCTCGTGAATCTGTCATCTTGGCGGGAGGGCCAAGTTGGGTAGTCCAATTGGGAAGAAGAGATAGTAGAAATGCAAATAGATCTGGAGCTGAAAACAACCTCCCAAGCCCTTTTGAAACACTGGATCAACTTCGAGTAAAATTTAATGCAGTTGGCCTCGATTCTACTGATCTTGTGGCTTTATCTGGAGCGCATACGTTCGGAAGGTCAAGATGCGTATTCTTCAGCGGGCGGCTAAGCAATTTCAGCGGTTCCGGAAGTCCAGACCCGACTCTTGACCCGACACTTCGGGATGCGCTCGTCATCGCTTGTCCAACCGGCGACGGAAACAACCGCATCGCACTTGACGTGGCGACGCCGGAGGACTTCGACAATGCATATTACACGAATCTGGTGAACAACCGTGGGCTTCTCCAATCGGATCAAGAGCTGTTCTCAACCGAAGGGGCGGAAACCATAGCCACCGTGAACCGTTTTGCGGGGAACCAATCTGATTTCTTTGCTCAGTTCGGTGGGTCTATGATAAACATGGGGAACCTTCAACCATTACTTGCGCCGGCCGGAGAAATCAGGTCGAATTGTAGGCGGGTTAATCCTTTGAATATTACTACTGCTACTACTACTGCTACTGCTGTTATGTAA 1032 48.74 MCTTNMSSFKVAALALFLCMMLRGSSAQLSPTFYDQSCPNLTAIVRDAISQALQGDVRAGAKLIRFHFHDCFVNGCDGSVLLENQDGVQSELDAPGNQGIQGFDIVDNIKAAIEAACPNTVSCADILAISARESVILAGGPSWVVQLGRRDSRNANRSGAENNLPSPFETLDQLRVKFNAVGLDSTDLVALSGAHTFGRSRCVFFSGRLSNFSGSGSPDPTLDPTLRDALVIACPTGDGNNRIALDVATPEDFDNAYYTNLVNNRGLLQSDQELFSTEGAETIATVNRFAGNQSDFFAQFGGSMINMGNLQPLLAPAGEIRSNCRRVNPLNITTATTTATAVM 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 14323027 14324762 - Lsi10G010020.1 Lsi10g01002 672559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g01002 343 CDD secretory_peroxidase 28 327 IPR033905 GO:0004601|GO:0042744
Lsi10g01002 343 PRINTS Plant peroxidase signature 139 154 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g01002 343 PRINTS Plant peroxidase signature 38 57 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g01002 343 PRINTS Plant peroxidase signature 62 82 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g01002 343 PRINTS Plant peroxidase signature 260 277 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g01002 343 PRINTS Plant peroxidase signature 186 198 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g01002 343 PRINTS Plant peroxidase signature 120 130 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g01002 343 PRINTS Plant peroxidase signature 244 259 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g01002 343 PRINTS Plant peroxidase signature 101 114 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g01002 343 PRINTS Plant peroxidase signature 302 315 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g01002 343 PANTHER PEROXIDASE 72-RELATED 16 328 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi10g01002 343 ProSiteProfiles Plant heme peroxidase family profile. 28 328 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi10g01002 343 Pfam Peroxidase 45 291 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi10g01002 343 ProSitePatterns Peroxidases proximal heme-ligand signature. 187 197 IPR019793 -
Lsi10g01002 343 PRINTS Haem peroxidase superfamily signature 187 202 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi10g01002 343 PRINTS Haem peroxidase superfamily signature 139 151 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi10g01002 343 PRINTS Haem peroxidase superfamily signature 60 74 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi10g01002 343 PRINTS Haem peroxidase superfamily signature 246 261 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi10g01002 343 PRINTS Haem peroxidase superfamily signature 121 138 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi10g01002 343 Gene3D - 33 328 - -
Lsi10g01002 343 PANTHER PEROXIDASE 58 16 328 - -
Lsi10g01002 343 Gene3D Peroxidase, domain 2 165 307 - -
Lsi10g01002 343 SUPERFAMILY Heme-dependent peroxidases 28 329 IPR010255 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g00501 Lsi-Chr9:5237688 Lsi10g01002 Lsi-Chr10:14323027 1.19E-144 dispersed
Lsi10g01000 Lsi-Chr10:14304977 Lsi10g01002 Lsi-Chr10:14323027 7.97E-142 dispersed
Lsi10g01001 Lsi-Chr10:14314316 Lsi10g01002 Lsi-Chr10:14323027 1.40E-154 tandem
Lsi10g01002 Lsi-Chr10:14323027 Lsi10g01003 Lsi-Chr10:14330501 1.57E-99 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g01002 K00430 - csv:101217743 585.874